Protein–RNA interactions for Protein: Q9R1C7

Prpf40a, Pre-mRNA-processing factor 40 homolog A, mousemouse

Known RBP Predictions only

Length 953 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Prpf40aQ9R1C7 Mpp6-201ENSMUST00000036225 1896 ntTSL 1 (best) BASIC20.73■□□□□ 0.91
Prpf40aQ9R1C7 Sorcs2-201ENSMUST00000037370 5707 ntAPPRIS P1 TSL 1 (best) BASIC20.73■□□□□ 0.91
Prpf40aQ9R1C7 Mtmr9-201ENSMUST00000058679 2570 ntAPPRIS P1 TSL 1 (best) BASIC20.73■□□□□ 0.91
Prpf40aQ9R1C7 Pdzd8-201ENSMUST00000099274 7076 ntAPPRIS P1 TSL 1 (best) BASIC20.73■□□□□ 0.91
Prpf40aQ9R1C7 Plin1-202ENSMUST00000178257 1841 ntAPPRIS P1 TSL 1 (best) BASIC20.73■□□□□ 0.91
Prpf40aQ9R1C7 Alg9-201ENSMUST00000034561 2873 ntAPPRIS P1 TSL 1 (best) BASIC20.73■□□□□ 0.91
Prpf40aQ9R1C7 Pde1b-201ENSMUST00000023132 3218 ntAPPRIS P2 TSL 1 (best) BASIC20.73■□□□□ 0.91
Prpf40aQ9R1C7 AB124611-202ENSMUST00000086361 1310 ntAPPRIS ALT2 TSL 1 (best) BASIC20.73■□□□□ 0.91
Prpf40aQ9R1C7 Mark2-206ENSMUST00000164205 3104 ntAPPRIS ALT2 TSL 1 (best) BASIC20.73■□□□□ 0.91
Prpf40aQ9R1C7 Dxo-201ENSMUST00000046244 1519 ntAPPRIS P1 TSL 1 (best) BASIC20.73■□□□□ 0.91
Prpf40aQ9R1C7 Dact3-201ENSMUST00000108493 2989 ntAPPRIS P1 TSL 1 (best) BASIC20.73■□□□□ 0.91
Prpf40aQ9R1C7 Paics-203ENSMUST00000120912 2345 ntAPPRIS P1 TSL 1 (best) BASIC20.72■□□□□ 0.91
Prpf40aQ9R1C7 Lypd3-201ENSMUST00000080718 1649 ntAPPRIS P1 TSL 1 (best) BASIC20.72■□□□□ 0.91
Prpf40aQ9R1C7 Nfkbid-203ENSMUST00000108176 2014 ntAPPRIS ALT2 TSL 1 (best) BASIC20.72■□□□□ 0.91
Prpf40aQ9R1C7 Inppl1-202ENSMUST00000165052 4730 ntAPPRIS P1 TSL 1 (best) BASIC20.72■□□□□ 0.91
Prpf40aQ9R1C7 Golph3-205ENSMUST00000228671 2842 ntBASIC20.72■□□□□ 0.91
Prpf40aQ9R1C7 Knstrn-202ENSMUST00000110842 925 ntAPPRIS ALT2 TSL 3 BASIC20.72■□□□□ 0.91
Prpf40aQ9R1C7 Pkp4-210ENSMUST00000168631 4484 ntAPPRIS ALT1 TSL 1 (best) BASIC20.72■□□□□ 0.91
Prpf40aQ9R1C7 Epc2-201ENSMUST00000092123 4697 ntAPPRIS P1 TSL 1 (best) BASIC20.72■□□□□ 0.91
Prpf40aQ9R1C7 Arl4c-203ENSMUST00000187810 2740 ntAPPRIS P1 TSL 1 (best) BASIC20.72■□□□□ 0.91
Prpf40aQ9R1C7 Mex3d-201ENSMUST00000105350 3266 ntAPPRIS P1 TSL 1 (best) BASIC20.72■□□□□ 0.91
Prpf40aQ9R1C7 Gm15645-201ENSMUST00000131504 2208 ntTSL 5 BASIC20.72■□□□□ 0.91
Prpf40aQ9R1C7 Slc39a5-202ENSMUST00000167859 2025 ntAPPRIS P1 TSL 1 (best) BASIC20.71■□□□□ 0.91
Prpf40aQ9R1C7 D830050J10Rik-202ENSMUST00000203858 1813 ntBASIC20.71■□□□□ 0.91
Prpf40aQ9R1C7 AC126028.2-201ENSMUST00000228100 1833 ntBASIC20.71■□□□□ 0.91
Prpf40aQ9R1C7 1810055G02Rik-201ENSMUST00000039048 1882 ntAPPRIS P1 TSL 1 (best) BASIC20.71■□□□□ 0.91
Prpf40aQ9R1C7 Pole4-204ENSMUST00000160281 648 ntAPPRIS ALT1 TSL 1 (best) BASIC20.71■□□□□ 0.91
Prpf40aQ9R1C7 Mettl26-205ENSMUST00000169308 1026 ntTSL 2 BASIC20.71■□□□□ 0.91
Prpf40aQ9R1C7 Arl6ip4-201ENSMUST00000031351 1192 ntAPPRIS P2 TSL 1 (best) BASIC20.71■□□□□ 0.91
Prpf40aQ9R1C7 Krtap5-3-201ENSMUST00000084414 1074 ntAPPRIS ALT2 TSL 5 BASIC20.71■□□□□ 0.91
Prpf40aQ9R1C7 Rhbdf1-201ENSMUST00000020524 2946 ntAPPRIS P1 TSL 1 (best) BASIC20.71■□□□□ 0.91
Prpf40aQ9R1C7 Sbspon-201ENSMUST00000040695 2748 ntAPPRIS P1 TSL 1 (best) BASIC20.71■□□□□ 0.91
Prpf40aQ9R1C7 2310034G01Rik-201ENSMUST00000189008 1373 ntAPPRIS P1 TSL 5 BASIC20.71■□□□□ 0.91
Prpf40aQ9R1C7 Espn-205ENSMUST00000084114 1645 ntTSL 1 (best) BASIC20.71■□□□□ 0.91
Prpf40aQ9R1C7 Vgll2-202ENSMUST00000163017 1650 ntAPPRIS P3 TSL 1 (best) BASIC20.7■□□□□ 0.91
Prpf40aQ9R1C7 Crlf2-203ENSMUST00000200284 1405 ntAPPRIS ALT2 TSL 1 (best) BASIC20.7■□□□□ 0.9
Prpf40aQ9R1C7 Gm11762-201ENSMUST00000135630 1705 ntTSL 1 (best) BASIC20.7■□□□□ 0.9
Prpf40aQ9R1C7 Nptx1-201ENSMUST00000026670 5217 ntAPPRIS P1 TSL 1 (best) BASIC20.7■□□□□ 0.9
Prpf40aQ9R1C7 Exoc5-206ENSMUST00000161504 2582 ntTSL 5 BASIC20.7■□□□□ 0.9
Prpf40aQ9R1C7 Atxn2-201ENSMUST00000051950 4472 ntAPPRIS P1 TSL 1 (best) BASIC20.7■□□□□ 0.9
Prpf40aQ9R1C7 Chd3os-201ENSMUST00000129321 2081 ntAPPRIS P1 TSL 1 (best) BASIC20.7■□□□□ 0.9
Prpf40aQ9R1C7 Ciapin1-201ENSMUST00000034233 1807 ntAPPRIS P1 TSL 5 BASIC20.7■□□□□ 0.9
Prpf40aQ9R1C7 Tmem171-201ENSMUST00000064347 1161 ntAPPRIS P1 TSL 1 (best) BASIC20.7■□□□□ 0.9
Prpf40aQ9R1C7 Khk-204ENSMUST00000201621 1583 ntAPPRIS P1 TSL 1 (best) BASIC20.7■□□□□ 0.9
Prpf40aQ9R1C7 Dennd6a-201ENSMUST00000037585 6638 ntAPPRIS P1 TSL 1 (best) BASIC20.7■□□□□ 0.9
Prpf40aQ9R1C7 Stk11-201ENSMUST00000003152 2566 ntAPPRIS P3 TSL 1 (best) BASIC20.7■□□□□ 0.9
Prpf40aQ9R1C7 Ppp2r1b-209ENSMUST00000176349 1890 ntAPPRIS ALT2 TSL 5 BASIC20.69■□□□□ 0.9
Prpf40aQ9R1C7 Map4k5-203ENSMUST00000110570 4498 ntAPPRIS P5 TSL 5 BASIC20.69■□□□□ 0.9
Prpf40aQ9R1C7 Snhg20-202ENSMUST00000149822 593 ntTSL 1 (best) BASIC20.69■□□□□ 0.9
Prpf40aQ9R1C7 Zcrb1-208ENSMUST00000162160 850 ntAPPRIS ALT1 TSL 1 (best) BASIC20.69■□□□□ 0.9
Prpf40aQ9R1C7 Asap2-202ENSMUST00000064595 5678 ntAPPRIS P4 TSL 5 BASIC20.69■□□□□ 0.9
Prpf40aQ9R1C7 Fam78b-205ENSMUST00000165874 4986 ntAPPRIS P1 TSL 1 (best) BASIC20.69■□□□□ 0.9
Prpf40aQ9R1C7 Mgea5-201ENSMUST00000026243 5024 ntAPPRIS P1 TSL 1 (best) BASIC20.69■□□□□ 0.9
Prpf40aQ9R1C7 Gm5784-201ENSMUST00000179344 2478 ntBASIC20.69■□□□□ 0.9
Prpf40aQ9R1C7 Xkr4-201ENSMUST00000070533 3634 ntAPPRIS P1 TSL 1 (best) BASIC20.69■□□□□ 0.9
Prpf40aQ9R1C7 Clcn4-206ENSMUST00000210594 2539 ntAPPRIS ALT2 TSL 5 BASIC20.69■□□□□ 0.9
Prpf40aQ9R1C7 1700123O20Rik-201ENSMUST00000038539 1843 ntAPPRIS P1 TSL 1 (best) BASIC20.69■□□□□ 0.9
Prpf40aQ9R1C7 Krt87-201ENSMUST00000081945 1826 ntAPPRIS P1 TSL 1 (best) BASIC20.69■□□□□ 0.9
Prpf40aQ9R1C7 Eif4h-205ENSMUST00000202622 2726 ntAPPRIS P3 TSL 1 (best) BASIC20.69■□□□□ 0.9
Prpf40aQ9R1C7 Kmt5b-216ENSMUST00000176926 1551 ntAPPRIS ALT2 TSL 5 BASIC20.68■□□□□ 0.9
Prpf40aQ9R1C7 Ngb-203ENSMUST00000110177 1611 ntAPPRIS ALT1 TSL 1 (best) BASIC20.68■□□□□ 0.9
Prpf40aQ9R1C7 Tesmin-201ENSMUST00000025840 2234 ntAPPRIS P3 TSL 1 (best) BASIC20.68■□□□□ 0.9
Prpf40aQ9R1C7 Eif2b4-212ENSMUST00000202758 1767 ntTSL 5 BASIC20.68■□□□□ 0.9
Prpf40aQ9R1C7 Gm20421-201ENSMUST00000153344 672 ntTSL 3 BASIC20.68■□□□□ 0.9
Prpf40aQ9R1C7 Gm10153-201ENSMUST00000084415 522 ntTSL 5 BASIC20.68■□□□□ 0.9
Prpf40aQ9R1C7 Cd82-201ENSMUST00000028644 1824 ntAPPRIS P1 TSL 1 (best) BASIC20.68■□□□□ 0.9
Prpf40aQ9R1C7 Fam105a-202ENSMUST00000226145 2950 ntAPPRIS P1 BASIC20.68■□□□□ 0.9
Prpf40aQ9R1C7 Nat14-204ENSMUST00000207687 1415 ntAPPRIS P1 TSL 1 (best) BASIC20.68■□□□□ 0.9
Prpf40aQ9R1C7 Tmem114-201ENSMUST00000023400 1406 ntAPPRIS P1 TSL 1 (best) BASIC20.68■□□□□ 0.9
Prpf40aQ9R1C7 Olfm2-204ENSMUST00000217198 2005 ntAPPRIS ALT2 TSL 3 BASIC20.68■□□□□ 0.9
Prpf40aQ9R1C7 Uck1-201ENSMUST00000002625 2005 ntAPPRIS P1 TSL 1 (best) BASIC20.68■□□□□ 0.9
Prpf40aQ9R1C7 Setd3-201ENSMUST00000071095 2755 ntAPPRIS P1 TSL 1 (best) BASIC20.68■□□□□ 0.9
Prpf40aQ9R1C7 Wnt10a-201ENSMUST00000006718 2468 ntAPPRIS P1 TSL 1 (best) BASIC20.67■□□□□ 0.9
Prpf40aQ9R1C7 Smtnl2-201ENSMUST00000050226 2624 ntAPPRIS P2 TSL 1 (best) BASIC20.67■□□□□ 0.9
Prpf40aQ9R1C7 Hgsnat-201ENSMUST00000037609 2694 ntAPPRIS P1 TSL 1 (best) BASIC20.67■□□□□ 0.9
Prpf40aQ9R1C7 Golga5-202ENSMUST00000179218 2827 ntAPPRIS P1 TSL 1 (best) BASIC20.67■□□□□ 0.9
Prpf40aQ9R1C7 Trak1-209ENSMUST00000210798 5363 ntAPPRIS ALT2 TSL 1 (best) BASIC20.67■□□□□ 0.9
Prpf40aQ9R1C7 Apoe-205ENSMUST00000173739 1221 ntAPPRIS P1 TSL 1 (best) BASIC20.67■□□□□ 0.9
Prpf40aQ9R1C7 Apoe-209ENSMUST00000174355 1104 ntAPPRIS P1 TSL 5 BASIC20.67■□□□□ 0.9
Prpf40aQ9R1C7 Zfp580-202ENSMUST00000208570 693 ntAPPRIS ALT2 TSL 1 (best) BASIC20.67■□□□□ 0.9
Prpf40aQ9R1C7 Apoe-201ENSMUST00000003066 1128 ntAPPRIS P1 TSL 5 BASIC20.67■□□□□ 0.9
Prpf40aQ9R1C7 Gm10493-201ENSMUST00000097270 612 ntBASIC20.67■□□□□ 0.9
Prpf40aQ9R1C7 Gm26507-201ENSMUST00000181838 1410 ntTSL 1 (best) BASIC20.67■□□□□ 0.9
Prpf40aQ9R1C7 Sqstm1-202ENSMUST00000102774 2037 ntAPPRIS P1 TSL 1 (best) BASIC20.66■□□□□ 0.9
Prpf40aQ9R1C7 Dynll2-204ENSMUST00000178105 2187 ntAPPRIS P1 TSL 1 (best) BASIC20.66■□□□□ 0.9
Prpf40aQ9R1C7 Gm37352-201ENSMUST00000193908 2181 ntBASIC20.66■□□□□ 0.9
Prpf40aQ9R1C7 Cebpa-201ENSMUST00000042985 2626 ntAPPRIS P1 BASIC20.66■□□□□ 0.9
Prpf40aQ9R1C7 Stx2-201ENSMUST00000031378 2939 ntAPPRIS P3 TSL 1 (best) BASIC20.66■□□□□ 0.9
Prpf40aQ9R1C7 Ppp1r21-201ENSMUST00000038551 3141 ntAPPRIS P1 TSL 1 (best) BASIC20.66■□□□□ 0.9
Prpf40aQ9R1C7 Ppp4r1l-ps-204ENSMUST00000140992 367 ntTSL 3 BASIC20.66■□□□□ 0.9
Prpf40aQ9R1C7 Gins3-202ENSMUST00000212434 654 ntTSL 2 BASIC20.66■□□□□ 0.9
Prpf40aQ9R1C7 CT030146.1-201ENSMUST00000220919 217 ntBASIC20.66■□□□□ 0.9
Prpf40aQ9R1C7 Mrpl2-201ENSMUST00000002844 1031 ntAPPRIS P2 TSL 1 (best) BASIC20.66■□□□□ 0.9
Prpf40aQ9R1C7 Gm10129-202ENSMUST00000193100 1316 ntBASIC20.66■□□□□ 0.9
Prpf40aQ9R1C7 2410004B18Rik-201ENSMUST00000039571 1547 ntAPPRIS P1 TSL 1 (best) BASIC20.66■□□□□ 0.9
Prpf40aQ9R1C7 March11-202ENSMUST00000140840 1558 ntAPPRIS P3 TSL 2 BASIC20.66■□□□□ 0.9
Prpf40aQ9R1C7 Gm18688-201ENSMUST00000204695 1859 ntBASIC20.66■□□□□ 0.9
Prpf40aQ9R1C7 Jag1-201ENSMUST00000028735 5612 ntAPPRIS P1 TSL 1 (best) BASIC20.66■□□□□ 0.9
Prpf40aQ9R1C7 Wdsub1-201ENSMUST00000028368 2072 ntAPPRIS P1 TSL 1 (best) BASIC20.66■□□□□ 0.9
Prpf40aQ9R1C7 Def6-201ENSMUST00000002327 2277 ntAPPRIS P1 TSL 1 (best) BASIC20.66■□□□□ 0.9
Retrieved 100 of 76,532 protein–RNA pairs in 23 ms