Protein–RNA interactions for Protein: Q9ERP3

Trim54, Tripartite motif-containing protein 54, mousemouse

Predictions only

Length 366 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Trim54Q9ERP3 Svbp-203ENSMUST00000106345 684 ntTSL 2 BASIC20.45■□□□□ 0.86
Trim54Q9ERP3 Gnas-205ENSMUST00000109083 730 ntTSL 2 BASIC20.45■□□□□ 0.86
Trim54Q9ERP3 Nudt8-203ENSMUST00000122924 1082 ntTSL 2 BASIC20.45■□□□□ 0.86
Trim54Q9ERP3 Smn1-201ENSMUST00000022147 1222 ntAPPRIS P1 TSL 1 (best) BASIC20.45■□□□□ 0.86
Trim54Q9ERP3 Crb3-202ENSMUST00000097299 1206 ntAPPRIS P3 TSL 1 (best) BASIC20.45■□□□□ 0.86
Trim54Q9ERP3 Ciapin1-201ENSMUST00000034233 1807 ntAPPRIS P1 TSL 5 BASIC20.45■□□□□ 0.86
Trim54Q9ERP3 Selenoo-201ENSMUST00000082439 2383 ntAPPRIS P1 TSL 1 (best) BASIC20.45■□□□□ 0.86
Trim54Q9ERP3 Anapc16-201ENSMUST00000020307 1379 ntTSL 2 BASIC20.45■□□□□ 0.86
Trim54Q9ERP3 Qpct-201ENSMUST00000040789 1924 ntAPPRIS P1 TSL 1 (best) BASIC20.45■□□□□ 0.86
Trim54Q9ERP3 Gm5475-201ENSMUST00000132119 2608 ntAPPRIS P5 TSL 1 (best) BASIC20.44■□□□□ 0.86
Trim54Q9ERP3 Sae1-201ENSMUST00000094815 1875 ntAPPRIS P1 TSL 1 (best) BASIC20.44■□□□□ 0.86
Trim54Q9ERP3 Wnk2-211ENSMUST00000162581 6628 ntAPPRIS ALT2 TSL 5 BASIC20.44■□□□□ 0.86
Trim54Q9ERP3 Gm8520-201ENSMUST00000186517 868 ntBASIC20.44■□□□□ 0.86
Trim54Q9ERP3 Wdr20-205ENSMUST00000193053 1351 ntTSL 1 (best) BASIC20.44■□□□□ 0.86
Trim54Q9ERP3 Adap2-201ENSMUST00000021050 1785 ntAPPRIS P1 TSL 1 (best) BASIC20.44■□□□□ 0.86
Trim54Q9ERP3 Gm30003-201ENSMUST00000200700 1433 ntTSL 1 (best) BASIC20.44■□□□□ 0.86
Trim54Q9ERP3 Iqck-206ENSMUST00000208658 2891 ntBASIC20.44■□□□□ 0.86
Trim54Q9ERP3 1700095J03Rik-201ENSMUST00000143715 1808 ntTSL 1 (best) BASIC20.43■□□□□ 0.86
Trim54Q9ERP3 Irx5-202ENSMUST00000210246 2550 ntTSL 5 BASIC20.43■□□□□ 0.86
Trim54Q9ERP3 Baiap2-203ENSMUST00000103021 3398 ntAPPRIS ALT2 TSL 1 (best) BASIC20.43■□□□□ 0.86
Trim54Q9ERP3 H19-202ENSMUST00000136359 2286 ntTSL 1 (best) BASIC20.43■□□□□ 0.86
Trim54Q9ERP3 Gab2-201ENSMUST00000004622 6168 ntAPPRIS P3 TSL 1 (best) BASIC20.43■□□□□ 0.86
Trim54Q9ERP3 Ezh2-204ENSMUST00000114618 2775 ntTSL 1 (best) BASIC20.43■□□□□ 0.86
Trim54Q9ERP3 Speg-204ENSMUST00000113589 833 ntTSL 2 BASIC20.43■□□□□ 0.86
Trim54Q9ERP3 Mrps18a-202ENSMUST00000123646 621 ntTSL 2 BASIC20.43■□□□□ 0.86
Trim54Q9ERP3 AA465934-203ENSMUST00000177150 383 ntTSL 1 (best) BASIC20.43■□□□□ 0.86
Trim54Q9ERP3 Gm37856-201ENSMUST00000191634 999 ntBASIC20.43■□□□□ 0.86
Trim54Q9ERP3 Gm26524-201ENSMUST00000192339 390 ntBASIC20.43■□□□□ 0.86
Trim54Q9ERP3 AC135637.1-201ENSMUST00000227750 365 ntBASIC20.43■□□□□ 0.86
Trim54Q9ERP3 Nat8-201ENSMUST00000032073 1123 ntAPPRIS P1 TSL 1 (best) BASIC20.43■□□□□ 0.86
Trim54Q9ERP3 Tmem126a-201ENSMUST00000032844 799 ntAPPRIS P1 TSL 1 (best) BASIC20.43■□□□□ 0.86
Trim54Q9ERP3 Ube2d-ps-204ENSMUST00000137510 1846 ntTSL 1 (best) BASIC20.43■□□□□ 0.86
Trim54Q9ERP3 Hook2-203ENSMUST00000209764 2516 ntTSL 5 BASIC20.43■□□□□ 0.86
Trim54Q9ERP3 Oaf-201ENSMUST00000034512 2526 ntAPPRIS P1 TSL 1 (best) BASIC20.43■□□□□ 0.86
Trim54Q9ERP3 St3gal4-201ENSMUST00000034537 2095 ntAPPRIS P1 TSL 1 (best) BASIC20.42■□□□□ 0.86
Trim54Q9ERP3 Lhx2-203ENSMUST00000143783 1696 ntTSL 1 (best) BASIC20.42■□□□□ 0.86
Trim54Q9ERP3 Tmem145-201ENSMUST00000108409 2298 ntAPPRIS P2 TSL 2 BASIC20.42■□□□□ 0.86
Trim54Q9ERP3 Ube2i-213ENSMUST00000174031 824 ntAPPRIS P1 TSL 1 (best) BASIC20.42■□□□□ 0.86
Trim54Q9ERP3 Dxo-211ENSMUST00000180043 1447 ntAPPRIS P1 TSL 5 BASIC20.42■□□□□ 0.86
Trim54Q9ERP3 Bola3-207ENSMUST00000136501 2312 ntAPPRIS P1 TSL 1 (best) BASIC20.42■□□□□ 0.86
Trim54Q9ERP3 Thra-201ENSMUST00000064187 2452 ntTSL 1 (best) BASIC20.42■□□□□ 0.86
Trim54Q9ERP3 K230010J24Rik-204ENSMUST00000187868 1810 ntAPPRIS P1 TSL 5 BASIC20.41■□□□□ 0.86
Trim54Q9ERP3 Hras-207ENSMUST00000168550 2272 ntTSL 5 BASIC20.41■□□□□ 0.86
Trim54Q9ERP3 Ern1-203ENSMUST00000106800 654 ntTSL 3 BASIC20.41■□□□□ 0.86
Trim54Q9ERP3 Zfp560-202ENSMUST00000143992 608 ntTSL 1 (best) BASIC20.41■□□□□ 0.86
Trim54Q9ERP3 Tex30-212ENSMUST00000152239 1046 ntAPPRIS P1 TSL 1 (best) BASIC20.41■□□□□ 0.86
Trim54Q9ERP3 Timp4-202ENSMUST00000205131 945 ntTSL 1 (best) BASIC20.41■□□□□ 0.86
Trim54Q9ERP3 Rab3c-203ENSMUST00000224180 967 ntBASIC20.41■□□□□ 0.86
Trim54Q9ERP3 Tex264-203ENSMUST00000169068 1364 ntAPPRIS P1 TSL 1 (best) BASIC20.41■□□□□ 0.86
Trim54Q9ERP3 Ccng2-201ENSMUST00000031331 2810 ntAPPRIS P1 TSL 1 (best) BASIC20.41■□□□□ 0.86
Trim54Q9ERP3 Aifm2-204ENSMUST00000105455 1512 ntAPPRIS P1 TSL 1 (best) BASIC20.41■□□□□ 0.86
Trim54Q9ERP3 Mbip-201ENSMUST00000021416 1512 ntAPPRIS P1 TSL 1 (best) BASIC20.41■□□□□ 0.86
Trim54Q9ERP3 Ppp1r36-201ENSMUST00000063977 1515 ntAPPRIS P1 TSL 5 BASIC20.41■□□□□ 0.86
Trim54Q9ERP3 Hoxc6-201ENSMUST00000001711 1581 ntAPPRIS P1 TSL 1 (best) BASIC20.41■□□□□ 0.86
Trim54Q9ERP3 Gm13509-201ENSMUST00000119733 1308 ntBASIC20.4■□□□□ 0.86
Trim54Q9ERP3 Mrps10-203ENSMUST00000119945 1018 ntAPPRIS P4 TSL 1 (best) BASIC20.4■□□□□ 0.86
Trim54Q9ERP3 Gm13168-201ENSMUST00000121771 632 ntBASIC20.4■□□□□ 0.86
Trim54Q9ERP3 Sncb-201ENSMUST00000036825 1351 ntAPPRIS P1 TSL 1 (best) BASIC20.4■□□□□ 0.86
Trim54Q9ERP3 AI314180-201ENSMUST00000055822 1478 ntTSL 1 (best) BASIC20.4■□□□□ 0.86
Trim54Q9ERP3 1700067K01Rik-201ENSMUST00000060357 1291 ntAPPRIS ALT2 TSL 1 (best) BASIC20.4■□□□□ 0.86
Trim54Q9ERP3 Retreg2-201ENSMUST00000097694 2561 ntAPPRIS P3 TSL 1 (best) BASIC20.4■□□□□ 0.86
Trim54Q9ERP3 Plekhh1-201ENSMUST00000039928 6439 ntAPPRIS P1 TSL 1 (best) BASIC20.39■□□□□ 0.86
Trim54Q9ERP3 Pnldc1-201ENSMUST00000163394 1689 ntAPPRIS P1 TSL 1 (best) BASIC20.39■□□□□ 0.86
Trim54Q9ERP3 9430060I03Rik-201ENSMUST00000191563 1689 ntTSL 1 (best) BASIC20.39■□□□□ 0.86
Trim54Q9ERP3 Daxx-202ENSMUST00000170075 2673 ntAPPRIS P2 TSL 1 (best) BASIC20.39■□□□□ 0.85
Trim54Q9ERP3 Chtop-207ENSMUST00000107346 1321 ntTSL 1 (best) BASIC20.39■□□□□ 0.85
Trim54Q9ERP3 Taz-208ENSMUST00000132437 768 ntTSL 3 BASIC20.39■□□□□ 0.85
Trim54Q9ERP3 Rps2-ps3-201ENSMUST00000213102 832 ntBASIC20.39■□□□□ 0.85
Trim54Q9ERP3 AC142113.1-201ENSMUST00000214931 801 ntTSL 5 BASIC20.39■□□□□ 0.85
Trim54Q9ERP3 Olfr322-201ENSMUST00000072030 984 ntAPPRIS P1 BASIC20.39■□□□□ 0.85
Trim54Q9ERP3 Ube2h-202ENSMUST00000102993 4657 ntAPPRIS P1 TSL 1 (best) BASIC20.39■□□□□ 0.85
Trim54Q9ERP3 Ltbp3-201ENSMUST00000081496 5190 ntAPPRIS P1 TSL 5 BASIC20.39■□□□□ 0.85
Trim54Q9ERP3 Arrb2-205ENSMUST00000108568 1777 ntTSL 1 (best) BASIC20.39■□□□□ 0.85
Trim54Q9ERP3 Pank2-204ENSMUST00000150843 4266 ntAPPRIS P1 TSL 1 (best) BASIC20.38■□□□□ 0.85
Trim54Q9ERP3 Dkk4-201ENSMUST00000033936 1315 ntAPPRIS P1 TSL 1 (best) BASIC20.38■□□□□ 0.85
Trim54Q9ERP3 Rapgef1-203ENSMUST00000102872 6402 ntAPPRIS P3 TSL 1 (best) BASIC20.38■□□□□ 0.85
Trim54Q9ERP3 Gm11627-202ENSMUST00000107081 818 ntAPPRIS P1 TSL 2 BASIC20.38■□□□□ 0.85
Trim54Q9ERP3 Hist2h2aa2-201ENSMUST00000074976 528 ntAPPRIS P1 BASIC20.38■□□□□ 0.85
Trim54Q9ERP3 Hist2h2aa1-201ENSMUST00000078756 586 ntAPPRIS P1 BASIC20.38■□□□□ 0.85
Trim54Q9ERP3 Nt5c3b-204ENSMUST00000107398 1635 ntTSL 1 (best) BASIC20.38■□□□□ 0.85
Trim54Q9ERP3 Hira-201ENSMUST00000004222 4218 ntAPPRIS P1 TSL 1 (best) BASIC20.38■□□□□ 0.85
Trim54Q9ERP3 Adgrv1-211ENSMUST00000146749 1592 ntTSL 1 (best) BASIC20.38■□□□□ 0.85
Trim54Q9ERP3 Galnt11-201ENSMUST00000045737 2552 ntAPPRIS P1 TSL 1 (best) BASIC20.38■□□□□ 0.85
Trim54Q9ERP3 1700065D16Rik-204ENSMUST00000189348 1540 ntTSL 2 BASIC20.37■□□□□ 0.85
Trim54Q9ERP3 Stoml1-201ENSMUST00000034883 1984 ntAPPRIS P1 TSL 1 (best) BASIC20.37■□□□□ 0.85
Trim54Q9ERP3 Riox1-201ENSMUST00000053744 2344 ntAPPRIS P1 BASIC20.37■□□□□ 0.85
Trim54Q9ERP3 Znhit6-201ENSMUST00000098534 2339 ntAPPRIS P3 TSL 1 (best) BASIC20.37■□□□□ 0.85
Trim54Q9ERP3 Pbx1-206ENSMUST00000176790 1828 ntTSL 1 (best) BASIC20.37■□□□□ 0.85
Trim54Q9ERP3 1110004F10Rik-202ENSMUST00000106607 1153 ntTSL 1 (best) BASIC20.37■□□□□ 0.85
Trim54Q9ERP3 Tnnt2-201ENSMUST00000027671 1064 ntAPPRIS ALT2 TSL 5 BASIC20.37■□□□□ 0.85
Trim54Q9ERP3 E030030I06Rik-202ENSMUST00000179054 2081 ntAPPRIS P4 TSL 1 (best) BASIC20.37■□□□□ 0.85
Trim54Q9ERP3 Uba5-201ENSMUST00000035166 2404 ntAPPRIS P1 TSL 1 (best) BASIC20.37■□□□□ 0.85
Trim54Q9ERP3 Pdcd7-201ENSMUST00000048184 2419 ntAPPRIS P2 TSL 1 (best) BASIC20.37■□□□□ 0.85
Trim54Q9ERP3 Eefsec-206ENSMUST00000205179 2208 ntTSL 1 (best) BASIC20.37■□□□□ 0.85
Trim54Q9ERP3 Maml1-201ENSMUST00000059458 5528 ntAPPRIS P1 TSL 1 (best) BASIC20.37■□□□□ 0.85
Trim54Q9ERP3 1110032F04Rik-201ENSMUST00000054551 2578 ntAPPRIS P1 BASIC20.37■□□□□ 0.85
Trim54Q9ERP3 Trmt13-210ENSMUST00000198454 880 ntBASIC20.36■□□□□ 0.85
Trim54Q9ERP3 Gxylt1-201ENSMUST00000049484 6611 ntAPPRIS P3 TSL 1 (best) BASIC20.36■□□□□ 0.85
Trim54Q9ERP3 Syt5-201ENSMUST00000065957 1750 ntAPPRIS P1 TSL 1 (best) BASIC20.36■□□□□ 0.85
Trim54Q9ERP3 Stx4a-201ENSMUST00000033075 1456 ntAPPRIS P1 TSL 1 (best) BASIC20.36■□□□□ 0.85
Retrieved 100 of 76,532 protein–RNA pairs in 23.9 ms