Protein–RNA interactions for Protein: Q9D0R4

Ddx56, Probable ATP-dependent RNA helicase DDX56, mousemouse

Known RBP Predictions only

Length 546 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Ddx56Q9D0R4 Gnai2-203ENSMUST00000192837 421 ntTSL 5 BASIC19.85■□□□□ 0.77
Ddx56Q9D0R4 Gm45168-202ENSMUST00000206461 1069 ntTSL 5 BASIC19.85■□□□□ 0.77
Ddx56Q9D0R4 Gm11175-202ENSMUST00000211380 408 ntTSL 3 BASIC19.85■□□□□ 0.77
Ddx56Q9D0R4 Mrpl40-201ENSMUST00000023391 1185 ntAPPRIS P1 TSL 1 (best) BASIC19.85■□□□□ 0.77
Ddx56Q9D0R4 Gfra4-201ENSMUST00000028787 909 ntAPPRIS P3 TSL 1 (best) BASIC19.85■□□□□ 0.77
Ddx56Q9D0R4 Gm9988-201ENSMUST00000069786 435 ntBASIC19.85■□□□□ 0.77
Ddx56Q9D0R4 Gm10306-201ENSMUST00000094969 533 ntAPPRIS P1 BASIC19.85■□□□□ 0.77
Ddx56Q9D0R4 Tesmin-201ENSMUST00000025840 2234 ntAPPRIS P3 TSL 1 (best) BASIC19.85■□□□□ 0.77
Ddx56Q9D0R4 Tmem121-201ENSMUST00000058491 1574 ntAPPRIS P1 TSL 1 (best) BASIC19.85■□□□□ 0.77
Ddx56Q9D0R4 Arl4c-203ENSMUST00000187810 2740 ntAPPRIS P1 TSL 1 (best) BASIC19.85■□□□□ 0.77
Ddx56Q9D0R4 Cachd1-201ENSMUST00000030257 5765 ntAPPRIS P2 TSL 1 (best) BASIC19.85■□□□□ 0.77
Ddx56Q9D0R4 Rcc1-202ENSMUST00000084250 2285 ntAPPRIS P1 TSL 1 (best) BASIC19.85■□□□□ 0.77
Ddx56Q9D0R4 Mark2-206ENSMUST00000164205 3104 ntAPPRIS ALT2 TSL 1 (best) BASIC19.85■□□□□ 0.77
Ddx56Q9D0R4 Gas2-203ENSMUST00000107591 2232 ntAPPRIS P1 TSL 1 (best) BASIC19.84■□□□□ 0.77
Ddx56Q9D0R4 Plppr3-201ENSMUST00000092325 2766 ntAPPRIS P3 TSL 1 (best) BASIC19.84■□□□□ 0.77
Ddx56Q9D0R4 Btnl9-202ENSMUST00000066531 1945 ntAPPRIS ALT2 TSL 1 (best) BASIC19.84■□□□□ 0.77
Ddx56Q9D0R4 Hdhd5-201ENSMUST00000075303 1928 ntAPPRIS P1 TSL 1 (best) BASIC19.84■□□□□ 0.77
Ddx56Q9D0R4 Slc9a6-201ENSMUST00000077741 4976 ntAPPRIS P1 TSL 1 (best) BASIC19.84■□□□□ 0.77
Ddx56Q9D0R4 Pknox2-201ENSMUST00000039674 3632 ntAPPRIS P1 TSL 1 (best) BASIC19.84■□□□□ 0.77
Ddx56Q9D0R4 Gm27032-201ENSMUST00000183124 1116 ntBASIC19.84■□□□□ 0.77
Ddx56Q9D0R4 Nsmf-206ENSMUST00000114388 2781 ntAPPRIS ALT2 TSL 1 (best) BASIC19.84■□□□□ 0.77
Ddx56Q9D0R4 Gm21992-201ENSMUST00000172000 1434 ntAPPRIS P1 TSL 2 BASIC19.84■□□□□ 0.77
Ddx56Q9D0R4 Gm21992-206ENSMUST00000179909 1435 ntTSL 5 BASIC19.84■□□□□ 0.77
Ddx56Q9D0R4 Cd37-209ENSMUST00000211373 1428 ntAPPRIS ALT2 TSL 1 (best) BASIC19.84■□□□□ 0.77
Ddx56Q9D0R4 Golph3-205ENSMUST00000228671 2842 ntBASIC19.84■□□□□ 0.77
Ddx56Q9D0R4 Lgmn-202ENSMUST00000110020 1835 ntAPPRIS P1 TSL 1 (best) BASIC19.83■□□□□ 0.77
Ddx56Q9D0R4 Hnrnpd-211ENSMUST00000172361 6811 ntAPPRIS P4 TSL 1 (best) BASIC19.83■□□□□ 0.77
Ddx56Q9D0R4 Pno1-201ENSMUST00000020317 1544 ntAPPRIS P1 TSL 1 (best) BASIC19.83■□□□□ 0.77
Ddx56Q9D0R4 Pcgf3-202ENSMUST00000112597 2169 ntTSL 1 (best) BASIC19.83■□□□□ 0.77
Ddx56Q9D0R4 C230096K16Rik-201ENSMUST00000198074 1722 ntBASIC19.83■□□□□ 0.77
Ddx56Q9D0R4 Rpl13-201ENSMUST00000000756 780 ntAPPRIS P1 TSL 1 (best) BASIC19.83■□□□□ 0.77
Ddx56Q9D0R4 A530010L16Rik-201ENSMUST00000212007 2336 ntTSL 1 (best) BASIC19.83■□□□□ 0.76
Ddx56Q9D0R4 Fgfr1-215ENSMUST00000179592 5041 ntTSL 5 BASIC19.83■□□□□ 0.76
Ddx56Q9D0R4 Hoxd3-201ENSMUST00000047830 2292 ntAPPRIS P1 TSL 5 BASIC19.83■□□□□ 0.76
Ddx56Q9D0R4 Lrrc43-203ENSMUST00000196809 2031 ntAPPRIS ALT2 TSL 1 (best) BASIC19.83■□□□□ 0.76
Ddx56Q9D0R4 Mdfi-201ENSMUST00000035375 1371 ntAPPRIS P1 TSL 1 (best) BASIC19.83■□□□□ 0.76
Ddx56Q9D0R4 Dio3-202ENSMUST00000173014 2030 ntAPPRIS P1 BASIC19.82■□□□□ 0.76
Ddx56Q9D0R4 Plekhh1-201ENSMUST00000039928 6439 ntAPPRIS P1 TSL 1 (best) BASIC19.82■□□□□ 0.76
Ddx56Q9D0R4 Gm20421-201ENSMUST00000153344 672 ntTSL 3 BASIC19.82■□□□□ 0.76
Ddx56Q9D0R4 Gar1-201ENSMUST00000029643 1271 ntAPPRIS P1 TSL 1 (best) BASIC19.82■□□□□ 0.76
Ddx56Q9D0R4 Tmem171-201ENSMUST00000064347 1161 ntAPPRIS P1 TSL 1 (best) BASIC19.82■□□□□ 0.76
Ddx56Q9D0R4 Krtap5-3-201ENSMUST00000084414 1074 ntAPPRIS ALT2 TSL 5 BASIC19.82■□□□□ 0.76
Ddx56Q9D0R4 B3gnt9-201ENSMUST00000093217 2325 ntAPPRIS P1 TSL 2 BASIC19.82■□□□□ 0.76
Ddx56Q9D0R4 Adcy3-202ENSMUST00000124505 4962 ntAPPRIS ALT1 TSL 1 (best) BASIC19.82■□□□□ 0.76
Ddx56Q9D0R4 Zmynd10-201ENSMUST00000010188 1765 ntAPPRIS P1 TSL 1 (best) BASIC19.82■□□□□ 0.76
Ddx56Q9D0R4 Coq9-201ENSMUST00000034234 1789 ntAPPRIS P1 TSL 1 (best) BASIC19.82■□□□□ 0.76
Ddx56Q9D0R4 Ntn5-201ENSMUST00000107742 1574 ntTSL 1 (best) BASIC19.82■□□□□ 0.76
Ddx56Q9D0R4 Rnf32-204ENSMUST00000160246 1565 ntAPPRIS P1 TSL 1 (best) BASIC19.82■□□□□ 0.76
Ddx56Q9D0R4 Ppp1r21-201ENSMUST00000038551 3141 ntAPPRIS P1 TSL 1 (best) BASIC19.82■□□□□ 0.76
Ddx56Q9D0R4 Gm4737-201ENSMUST00000059524 2093 ntAPPRIS P1 BASIC19.82■□□□□ 0.76
Ddx56Q9D0R4 Sox10-201ENSMUST00000040019 2713 ntAPPRIS P1 TSL 1 (best) BASIC19.82■□□□□ 0.76
Ddx56Q9D0R4 Golga5-202ENSMUST00000179218 2827 ntAPPRIS P1 TSL 1 (best) BASIC19.81■□□□□ 0.76
Ddx56Q9D0R4 Nfatc2-201ENSMUST00000029057 2310 ntTSL 1 (best) BASIC19.81■□□□□ 0.76
Ddx56Q9D0R4 Gm26995-201ENSMUST00000182216 1306 ntTSL 1 (best) BASIC19.81■□□□□ 0.76
Ddx56Q9D0R4 Minpp1-201ENSMUST00000025827 2619 ntAPPRIS P1 TSL 1 (best) BASIC19.81■□□□□ 0.76
Ddx56Q9D0R4 Foxj2-201ENSMUST00000003238 5283 ntAPPRIS P1 TSL 1 (best) BASIC19.81■□□□□ 0.76
Ddx56Q9D0R4 Crnde-206ENSMUST00000179421 773 ntTSL 3 BASIC19.81■□□□□ 0.76
Ddx56Q9D0R4 Tnfsf11-201ENSMUST00000022592 2236 ntAPPRIS P1 TSL 1 (best) BASIC19.81■□□□□ 0.76
Ddx56Q9D0R4 Smtnl2-201ENSMUST00000050226 2624 ntAPPRIS P2 TSL 1 (best) BASIC19.81■□□□□ 0.76
Ddx56Q9D0R4 Setd3-201ENSMUST00000071095 2755 ntAPPRIS P1 TSL 1 (best) BASIC19.81■□□□□ 0.76
Ddx56Q9D0R4 Psmd3-201ENSMUST00000017365 2148 ntAPPRIS P1 TSL 1 (best) BASIC19.81■□□□□ 0.76
Ddx56Q9D0R4 Gm43231-201ENSMUST00000202960 2258 ntBASIC19.81■□□□□ 0.76
Ddx56Q9D0R4 Zyg11a-202ENSMUST00000106690 2421 ntAPPRIS ALT2 TSL 5 BASIC19.81■□□□□ 0.76
Ddx56Q9D0R4 Rncr4-201ENSMUST00000194541 2234 ntBASIC19.8■□□□□ 0.76
Ddx56Q9D0R4 Klhl25-203ENSMUST00000205612 1343 ntTSL 1 (best) BASIC19.8■□□□□ 0.76
Ddx56Q9D0R4 Cyp4f15-204ENSMUST00000168171 2168 ntAPPRIS P3 TSL 1 (best) BASIC19.8■□□□□ 0.76
Ddx56Q9D0R4 H19-202ENSMUST00000136359 2286 ntTSL 1 (best) BASIC19.8■□□□□ 0.76
Ddx56Q9D0R4 Klc3-203ENSMUST00000108458 1823 ntTSL 1 (best) BASIC19.8■□□□□ 0.76
Ddx56Q9D0R4 Tmem164-201ENSMUST00000087333 5149 ntAPPRIS P1 TSL 1 (best) BASIC19.8■□□□□ 0.76
Ddx56Q9D0R4 Cebpa-201ENSMUST00000042985 2626 ntAPPRIS P1 BASIC19.8■□□□□ 0.76
Ddx56Q9D0R4 Pdzd3-201ENSMUST00000034618 2193 ntAPPRIS P1 TSL 1 (best) BASIC19.8■□□□□ 0.76
Ddx56Q9D0R4 Gp5-201ENSMUST00000061190 2196 ntAPPRIS P1 TSL 1 (best) BASIC19.8■□□□□ 0.76
Ddx56Q9D0R4 Phf14-202ENSMUST00000115510 3353 ntTSL 1 (best) BASIC19.8■□□□□ 0.76
Ddx56Q9D0R4 Slc17a7-202ENSMUST00000209634 1860 ntTSL 5 BASIC19.79■□□□□ 0.76
Ddx56Q9D0R4 Gm10129-202ENSMUST00000193100 1316 ntBASIC19.79■□□□□ 0.76
Ddx56Q9D0R4 Dhps-201ENSMUST00000078665 1333 ntAPPRIS P1 TSL 1 (best) BASIC19.79■□□□□ 0.76
Ddx56Q9D0R4 D11Wsu47e-202ENSMUST00000106621 2062 ntAPPRIS P1 TSL 1 (best) BASIC19.79■□□□□ 0.76
Ddx56Q9D0R4 Reep4-203ENSMUST00000226563 1444 ntBASIC19.79■□□□□ 0.76
Ddx56Q9D0R4 Pde1b-201ENSMUST00000023132 3218 ntAPPRIS P2 TSL 1 (best) BASIC19.79■□□□□ 0.76
Ddx56Q9D0R4 Vax2os-202ENSMUST00000150233 595 ntTSL 3 BASIC19.79■□□□□ 0.76
Ddx56Q9D0R4 Gm26881-201ENSMUST00000180426 593 ntTSL 1 (best) BASIC19.79■□□□□ 0.76
Ddx56Q9D0R4 Hikeshi-201ENSMUST00000075010 715 ntTSL 3 BASIC19.79■□□□□ 0.76
Ddx56Q9D0R4 Gm29430-202ENSMUST00000191453 2015 ntTSL 5 BASIC19.79■□□□□ 0.76
Ddx56Q9D0R4 Gm11747-201ENSMUST00000142751 1648 ntTSL 1 (best) BASIC19.79■□□□□ 0.76
Ddx56Q9D0R4 Ntmt1-201ENSMUST00000041830 1387 ntAPPRIS P1 TSL 1 (best) BASIC19.79■□□□□ 0.76
Ddx56Q9D0R4 Adamtsl5-201ENSMUST00000095446 1957 ntAPPRIS P1 TSL 5 BASIC19.79■□□□□ 0.76
Ddx56Q9D0R4 Cbx6-203ENSMUST00000109627 5806 ntAPPRIS P2 TSL 1 (best) BASIC19.78■□□□□ 0.76
Ddx56Q9D0R4 Anks3-201ENSMUST00000023157 2483 ntAPPRIS P1 TSL 1 (best) BASIC19.78■□□□□ 0.76
Ddx56Q9D0R4 Gon7-202ENSMUST00000179263 525 ntTSL 1 (best) BASIC19.78■□□□□ 0.76
Ddx56Q9D0R4 Areg-201ENSMUST00000031325 1215 ntAPPRIS P1 TSL 1 (best) BASIC19.78■□□□□ 0.76
Ddx56Q9D0R4 Brpf3-201ENSMUST00000004985 5766 ntAPPRIS P1 TSL 1 (best) BASIC19.78■□□□□ 0.76
Ddx56Q9D0R4 Clcc1-203ENSMUST00000106613 3064 ntAPPRIS ALT2 TSL 1 (best) BASIC19.78■□□□□ 0.76
Ddx56Q9D0R4 Zfp579-206ENSMUST00000162731 2489 ntAPPRIS P1 BASIC19.78■□□□□ 0.76
Ddx56Q9D0R4 Nhlh1-201ENSMUST00000059794 2464 ntAPPRIS P1 TSL 1 (best) BASIC19.78■□□□□ 0.76
Ddx56Q9D0R4 Hoxb3os-201ENSMUST00000131275 2315 ntTSL 3 BASIC19.77■□□□□ 0.76
Ddx56Q9D0R4 Fam105a-202ENSMUST00000226145 2950 ntAPPRIS P1 BASIC19.77■□□□□ 0.76
Ddx56Q9D0R4 Wdsub1-201ENSMUST00000028368 2072 ntAPPRIS P1 TSL 1 (best) BASIC19.77■□□□□ 0.76
Ddx56Q9D0R4 Rhbdf1-201ENSMUST00000020524 2946 ntAPPRIS P1 TSL 1 (best) BASIC19.77■□□□□ 0.76
Ddx56Q9D0R4 3830408C21Rik-206ENSMUST00000225489 1810 ntBASIC19.77■□□□□ 0.76
Ddx56Q9D0R4 Cd248-201ENSMUST00000070630 2560 ntAPPRIS P1 BASIC19.77■□□□□ 0.76
Retrieved 100 of 76,532 protein–RNA pairs in 20.4 ms