Protein–RNA interactions for Protein: Q8K445

Clrn1, Clarin-1, mousemouse

Predictions only

Length 232 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Clrn1Q8K445 Mrpl40-201ENSMUST00000023391 1185 ntAPPRIS P1 TSL 1 (best) BASIC17.81■□□□□ 0.44
Clrn1Q8K445 Mfap4-201ENSMUST00000040522 939 ntAPPRIS ALT2 TSL 2 BASIC17.81■□□□□ 0.44
Clrn1Q8K445 Tmem171-201ENSMUST00000064347 1161 ntAPPRIS P1 TSL 1 (best) BASIC17.81■□□□□ 0.44
Clrn1Q8K445 Gmpr-201ENSMUST00000000260 1580 ntAPPRIS P1 TSL 1 (best) BASIC17.81■□□□□ 0.44
Clrn1Q8K445 Sort1-201ENSMUST00000102632 6796 ntAPPRIS P3 TSL 1 (best) BASIC17.81■□□□□ 0.44
Clrn1Q8K445 Ogfod2-202ENSMUST00000119269 1474 ntTSL 1 (best) BASIC17.81■□□□□ 0.44
Clrn1Q8K445 Tmem260-209ENSMUST00000226422 6333 ntAPPRIS ALT2 BASIC17.81■□□□□ 0.44
Clrn1Q8K445 Tmem114-201ENSMUST00000023400 1406 ntAPPRIS P1 TSL 1 (best) BASIC17.81■□□□□ 0.44
Clrn1Q8K445 Mms22l-205ENSMUST00000138567 1350 ntTSL 2 BASIC17.8■□□□□ 0.44
Clrn1Q8K445 Notch4-201ENSMUST00000015612 6591 ntAPPRIS P1 TSL 1 (best) BASIC17.8■□□□□ 0.44
Clrn1Q8K445 Slc2a13-202ENSMUST00000109283 6536 ntAPPRIS P1 TSL 1 (best) BASIC17.8■□□□□ 0.44
Clrn1Q8K445 Dhx15-205ENSMUST00000199321 2550 ntTSL 1 (best) BASIC17.8■□□□□ 0.44
Clrn1Q8K445 Gm20421-201ENSMUST00000153344 672 ntTSL 3 BASIC17.8■□□□□ 0.44
Clrn1Q8K445 Serbp1-216ENSMUST00000205106 1288 ntTSL 5 BASIC17.8■□□□□ 0.44
Clrn1Q8K445 Rpl13-201ENSMUST00000000756 780 ntAPPRIS P1 TSL 1 (best) BASIC17.8■□□□□ 0.44
Clrn1Q8K445 Polg2-201ENSMUST00000021060 1506 ntAPPRIS P1 TSL 1 (best) BASIC17.8■□□□□ 0.44
Clrn1Q8K445 Nudt3-201ENSMUST00000025050 2193 ntAPPRIS P1 TSL 1 (best) BASIC17.8■□□□□ 0.44
Clrn1Q8K445 Spsb3-203ENSMUST00000117890 1641 ntAPPRIS ALT2 TSL 1 (best) BASIC17.8■□□□□ 0.44
Clrn1Q8K445 Il23a-201ENSMUST00000026449 1360 ntAPPRIS P1 TSL 1 (best) BASIC17.79■□□□□ 0.44
Clrn1Q8K445 Pianp-201ENSMUST00000032479 2250 ntAPPRIS P2 TSL 1 (best) BASIC17.79■□□□□ 0.44
Clrn1Q8K445 Tlcd1-201ENSMUST00000092880 2700 ntAPPRIS ALT2 TSL 1 (best) BASIC17.79■□□□□ 0.44
Clrn1Q8K445 Lamp1-201ENSMUST00000033824 2229 ntAPPRIS P1 TSL 1 (best) BASIC17.79■□□□□ 0.44
Clrn1Q8K445 Ago4-201ENSMUST00000084289 6537 ntAPPRIS P1 TSL 1 (best) BASIC17.79■□□□□ 0.44
Clrn1Q8K445 Fbxw2-206ENSMUST00000113080 1923 ntAPPRIS P1 TSL 1 (best) BASIC17.79■□□□□ 0.44
Clrn1Q8K445 Rnf146-203ENSMUST00000160372 1948 ntAPPRIS P1 TSL 1 (best) BASIC17.79■□□□□ 0.44
Clrn1Q8K445 Cdh4-203ENSMUST00000108911 1208 ntTSL 1 (best) BASIC17.79■□□□□ 0.44
Clrn1Q8K445 Knstrn-202ENSMUST00000110842 925 ntAPPRIS ALT2 TSL 3 BASIC17.79■□□□□ 0.44
Clrn1Q8K445 Ppp4r1l-ps-204ENSMUST00000140992 367 ntTSL 3 BASIC17.79■□□□□ 0.44
Clrn1Q8K445 Pole4-204ENSMUST00000160281 648 ntAPPRIS ALT1 TSL 1 (best) BASIC17.79■□□□□ 0.44
Clrn1Q8K445 Crnde-206ENSMUST00000179421 773 ntTSL 3 BASIC17.79■□□□□ 0.44
Clrn1Q8K445 Gm38205-201ENSMUST00000192243 258 ntBASIC17.79■□□□□ 0.44
Clrn1Q8K445 Gins3-202ENSMUST00000212434 654 ntTSL 2 BASIC17.79■□□□□ 0.44
Clrn1Q8K445 Rgs19-202ENSMUST00000108769 1460 ntTSL 2 BASIC17.79■□□□□ 0.44
Clrn1Q8K445 5730507C01Rik-202ENSMUST00000177778 2542 ntAPPRIS ALT2 TSL 1 (best) BASIC17.79■□□□□ 0.44
Clrn1Q8K445 2810474O19Rik-201ENSMUST00000046689 6066 ntAPPRIS P2 TSL 1 (best) BASIC17.79■□□□□ 0.44
Clrn1Q8K445 Ubxn2a-201ENSMUST00000020962 2696 ntAPPRIS P1 TSL 1 (best) BASIC17.79■□□□□ 0.44
Clrn1Q8K445 A930001C03Rik-204ENSMUST00000154407 1402 ntTSL 1 (best) BASIC17.79■□□□□ 0.44
Clrn1Q8K445 Krt24-201ENSMUST00000017255 1847 ntAPPRIS P1 TSL 1 (best) BASIC17.79■□□□□ 0.44
Clrn1Q8K445 Aen-202ENSMUST00000107423 2230 ntAPPRIS P3 TSL 5 BASIC17.79■□□□□ 0.44
Clrn1Q8K445 Sybu-208ENSMUST00000228057 3026 ntAPPRIS ALT2 BASIC17.79■□□□□ 0.44
Clrn1Q8K445 Atf1-201ENSMUST00000023769 2365 ntAPPRIS P1 TSL 1 (best) BASIC17.79■□□□□ 0.44
Clrn1Q8K445 Rnf32-204ENSMUST00000160246 1565 ntAPPRIS P1 TSL 1 (best) BASIC17.79■□□□□ 0.44
Clrn1Q8K445 Tmem121-201ENSMUST00000058491 1574 ntAPPRIS P1 TSL 1 (best) BASIC17.79■□□□□ 0.44
Clrn1Q8K445 Mir155hg-202ENSMUST00000185662 1362 ntTSL 5 BASIC17.79■□□□□ 0.44
Clrn1Q8K445 Gramd1a-201ENSMUST00000001280 2713 ntAPPRIS P2 TSL 1 (best) BASIC17.78■□□□□ 0.44
Clrn1Q8K445 Ankrd40-203ENSMUST00000107818 3487 ntAPPRIS P3 TSL 5 BASIC17.78■□□□□ 0.44
Clrn1Q8K445 Smarcc1-207ENSMUST00000199896 5773 ntAPPRIS ALT2 TSL 1 (best) BASIC17.78■□□□□ 0.44
Clrn1Q8K445 Gm10129-202ENSMUST00000193100 1316 ntBASIC17.78■□□□□ 0.44
Clrn1Q8K445 Tbc1d25-201ENSMUST00000039892 2648 ntAPPRIS P3 TSL 1 (best) BASIC17.78■□□□□ 0.44
Clrn1Q8K445 Zfp668-202ENSMUST00000106261 2410 ntAPPRIS P1 TSL 1 (best) BASIC17.78■□□□□ 0.44
Clrn1Q8K445 5730507C01Rik-201ENSMUST00000063216 2431 ntAPPRIS P3 TSL 1 (best) BASIC17.78■□□□□ 0.44
Clrn1Q8K445 Capzb-204ENSMUST00000102508 1674 ntAPPRIS ALT1 TSL 1 (best) BASIC17.78■□□□□ 0.44
Clrn1Q8K445 Krt87-201ENSMUST00000081945 1826 ntAPPRIS P1 TSL 1 (best) BASIC17.78■□□□□ 0.44
Clrn1Q8K445 Vax2os-202ENSMUST00000150233 595 ntTSL 3 BASIC17.78■□□□□ 0.44
Clrn1Q8K445 Lhx1-204ENSMUST00000184646 1201 ntTSL 5 BASIC17.78■□□□□ 0.44
Clrn1Q8K445 Gnai2-203ENSMUST00000192837 421 ntTSL 5 BASIC17.78■□□□□ 0.44
Clrn1Q8K445 Gm11175-202ENSMUST00000211380 408 ntTSL 3 BASIC17.78■□□□□ 0.44
Clrn1Q8K445 Cox7c-202ENSMUST00000078764 433 ntTSL 2 BASIC17.78■□□□□ 0.44
Clrn1Q8K445 Eif4h-205ENSMUST00000202622 2726 ntAPPRIS P3 TSL 1 (best) BASIC17.78■□□□□ 0.44
Clrn1Q8K445 Donson-202ENSMUST00000114031 2147 ntAPPRIS ALT2 TSL 5 BASIC17.78■□□□□ 0.44
Clrn1Q8K445 Dlg3-204ENSMUST00000113736 4940 ntTSL 1 (best) BASIC17.78■□□□□ 0.44
Clrn1Q8K445 Runx2-210ENSMUST00000162373 1565 ntAPPRIS ALT2 TSL 5 BASIC17.78■□□□□ 0.44
Clrn1Q8K445 Arid1a-202ENSMUST00000105897 8175 ntAPPRIS P2 TSL 5 BASIC17.78■□□□□ 0.44
Clrn1Q8K445 Cpne7-201ENSMUST00000037900 2398 ntAPPRIS P1 TSL 1 (best) BASIC17.77■□□□□ 0.44
Clrn1Q8K445 Gm5540-201ENSMUST00000131852 1848 ntBASIC17.77■□□□□ 0.44
Clrn1Q8K445 Gm26995-201ENSMUST00000182216 1306 ntTSL 1 (best) BASIC17.77■□□□□ 0.44
Clrn1Q8K445 Mfsd6-205ENSMUST00000156876 4932 ntAPPRIS P4 TSL 5 BASIC17.77■□□□□ 0.44
Clrn1Q8K445 Auh-203ENSMUST00000119311 2627 ntTSL 1 (best) BASIC17.77■□□□□ 0.44
Clrn1Q8K445 B930094E09Rik-201ENSMUST00000164667 1240 ntAPPRIS P1 BASIC17.77■□□□□ 0.44
Clrn1Q8K445 AC124603.1-201ENSMUST00000223843 308 ntBASIC17.77■□□□□ 0.44
Clrn1Q8K445 Arl6ip4-201ENSMUST00000031351 1192 ntAPPRIS P2 TSL 1 (best) BASIC17.77■□□□□ 0.44
Clrn1Q8K445 Hoxc12-201ENSMUST00000055562 1031 ntAPPRIS P1 TSL 1 (best) BASIC17.77■□□□□ 0.44
Clrn1Q8K445 Gm10306-201ENSMUST00000094969 533 ntAPPRIS P1 BASIC17.77■□□□□ 0.44
Clrn1Q8K445 Gm10493-201ENSMUST00000097270 612 ntBASIC17.77■□□□□ 0.44
Clrn1Q8K445 Reep4-203ENSMUST00000226563 1444 ntBASIC17.77■□□□□ 0.44
Clrn1Q8K445 Gas2l1-203ENSMUST00000109895 2530 ntAPPRIS P3 TSL 1 (best) BASIC17.77■□□□□ 0.44
Clrn1Q8K445 C230096K16Rik-201ENSMUST00000198074 1722 ntBASIC17.77■□□□□ 0.44
Clrn1Q8K445 Plppr3-201ENSMUST00000092325 2766 ntAPPRIS P3 TSL 1 (best) BASIC17.77■□□□□ 0.43
Clrn1Q8K445 Ube2d-ps-204ENSMUST00000137510 1846 ntTSL 1 (best) BASIC17.77■□□□□ 0.43
Clrn1Q8K445 Myd88-201ENSMUST00000035092 1960 ntAPPRIS P1 TSL 1 (best) BASIC17.77■□□□□ 0.43
Clrn1Q8K445 Itsn1-206ENSMUST00000113999 5393 ntTSL 5 BASIC17.76■□□□□ 0.43
Clrn1Q8K445 Dennd6a-201ENSMUST00000037585 6638 ntAPPRIS P1 TSL 1 (best) BASIC17.76■□□□□ 0.43
Clrn1Q8K445 Ehmt2-203ENSMUST00000097342 3934 ntAPPRIS ALT2 TSL 1 (best) BASIC17.76■□□□□ 0.43
Clrn1Q8K445 Anapc5-205ENSMUST00000197074 2413 ntAPPRIS ALT2 TSL 1 (best) BASIC17.76■□□□□ 0.43
Clrn1Q8K445 Anapc5-212ENSMUST00000199406 2413 ntAPPRIS ALT2 TSL 1 (best) BASIC17.76■□□□□ 0.43
Clrn1Q8K445 Tmbim4-201ENSMUST00000020446 904 ntAPPRIS P1 TSL 1 (best) BASIC17.76■□□□□ 0.43
Clrn1Q8K445 Ap4s1-201ENSMUST00000021338 1035 ntAPPRIS P1 TSL 1 (best) BASIC17.76■□□□□ 0.43
Clrn1Q8K445 Rchy1-201ENSMUST00000031345 1967 ntAPPRIS P1 TSL 1 (best) BASIC17.76■□□□□ 0.43
Clrn1Q8K445 Arhgap21-201ENSMUST00000114594 7351 ntAPPRIS ALT2 TSL 5 BASIC17.76■□□□□ 0.43
Clrn1Q8K445 Gdf15-202ENSMUST00000110103 1380 ntAPPRIS P1 TSL 1 (best) BASIC17.76■□□□□ 0.43
Clrn1Q8K445 Slc39a5-201ENSMUST00000042666 1947 ntAPPRIS P1 TSL 1 (best) BASIC17.76■□□□□ 0.43
Clrn1Q8K445 Cyb561-201ENSMUST00000019734 2741 ntAPPRIS P1 TSL 1 (best) BASIC17.76■□□□□ 0.43
Clrn1Q8K445 Sirt1-207ENSMUST00000177694 3353 ntTSL 5 BASIC17.76■□□□□ 0.43
Clrn1Q8K445 Stx2-201ENSMUST00000031378 2939 ntAPPRIS P3 TSL 1 (best) BASIC17.75■□□□□ 0.43
Clrn1Q8K445 Adgrv1-211ENSMUST00000146749 1592 ntTSL 1 (best) BASIC17.75■□□□□ 0.43
Clrn1Q8K445 Dxo-211ENSMUST00000180043 1447 ntAPPRIS P1 TSL 5 BASIC17.75■□□□□ 0.43
Clrn1Q8K445 Cdk19os-202ENSMUST00000143103 1124 ntTSL 1 (best) BASIC17.75■□□□□ 0.43
Clrn1Q8K445 Apoe-205ENSMUST00000173739 1221 ntAPPRIS P1 TSL 1 (best) BASIC17.75■□□□□ 0.43
Clrn1Q8K445 Apoe-209ENSMUST00000174355 1104 ntAPPRIS P1 TSL 5 BASIC17.75■□□□□ 0.43
Clrn1Q8K445 Gon7-202ENSMUST00000179263 525 ntTSL 1 (best) BASIC17.75■□□□□ 0.43
Retrieved 100 of 76,532 protein–RNA pairs in 38.4 ms