Protein–RNA interactions for Protein: Q6PE01

Snrnp40, U5 small nuclear ribonucleoprotein 40 kDa protein, mousemouse

Predictions only

Length 358 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Snrnp40Q6PE01 Pigp-202ENSMUST00000113906 745 ntAPPRIS P1 TSL 1 (best) BASIC16.7■□□□□ 0.26
Snrnp40Q6PE01 Gm16120-201ENSMUST00000127990 808 ntTSL 1 (best) BASIC16.7■□□□□ 0.26
Snrnp40Q6PE01 Tnnt2-206ENSMUST00000178854 1076 ntAPPRIS ALT2 TSL 5 BASIC16.7■□□□□ 0.26
Snrnp40Q6PE01 Tnnt2-211ENSMUST00000189355 1112 ntAPPRIS ALT2 TSL 5 BASIC16.7■□□□□ 0.26
Snrnp40Q6PE01 Tnnt2-212ENSMUST00000189732 1123 ntAPPRIS ALT2 TSL 5 BASIC16.7■□□□□ 0.26
Snrnp40Q6PE01 Arfip2-212ENSMUST00000209550 1141 ntAPPRIS ALT1 TSL 5 BASIC16.7■□□□□ 0.26
Snrnp40Q6PE01 Arfip2-214ENSMUST00000210911 938 ntTSL 5 BASIC16.7■□□□□ 0.26
Snrnp40Q6PE01 Plpp1-202ENSMUST00000070951 1272 ntAPPRIS ALT2 TSL 1 (best) BASIC16.7■□□□□ 0.26
Snrnp40Q6PE01 H2-Eb1-201ENSMUST00000074557 1184 ntAPPRIS P1 TSL 1 (best) BASIC16.7■□□□□ 0.26
Snrnp40Q6PE01 Ctdsp1-201ENSMUST00000027367 2876 ntAPPRIS P1 TSL 1 (best) BASIC16.7■□□□□ 0.26
Snrnp40Q6PE01 Nrarp-201ENSMUST00000104999 2582 ntAPPRIS P1 BASIC16.7■□□□□ 0.26
Snrnp40Q6PE01 Arhgap23-202ENSMUST00000107601 5450 ntTSL 5 BASIC16.69■□□□□ 0.26
Snrnp40Q6PE01 Gm32699-201ENSMUST00000221728 1988 ntBASIC16.69■□□□□ 0.26
Snrnp40Q6PE01 Adgrv1-211ENSMUST00000146749 1592 ntTSL 1 (best) BASIC16.69■□□□□ 0.26
Snrnp40Q6PE01 Kremen2-201ENSMUST00000046525 2123 ntAPPRIS P1 TSL 1 (best) BASIC16.69■□□□□ 0.26
Snrnp40Q6PE01 Mpz-201ENSMUST00000070758 2002 ntAPPRIS P1 TSL 1 (best) BASIC16.69■□□□□ 0.26
Snrnp40Q6PE01 Dhrs7-201ENSMUST00000021512 1385 ntAPPRIS P1 TSL 1 (best) BASIC16.69■□□□□ 0.26
Snrnp40Q6PE01 Atoh8-201ENSMUST00000042646 2355 ntAPPRIS P1 TSL 1 (best) BASIC16.69■□□□□ 0.26
Snrnp40Q6PE01 Gm16127-201ENSMUST00000131619 234 ntTSL 5 BASIC16.69■□□□□ 0.26
Snrnp40Q6PE01 Dmrta2os-202ENSMUST00000141893 691 ntTSL 3 BASIC16.69■□□□□ 0.26
Snrnp40Q6PE01 Gm37055-201ENSMUST00000191866 133 ntBASIC16.69■□□□□ 0.26
Snrnp40Q6PE01 2510002D24Rik-201ENSMUST00000055413 1281 ntAPPRIS P1 TSL 1 (best) BASIC16.69■□□□□ 0.26
Snrnp40Q6PE01 Gjc2-201ENSMUST00000108790 2169 ntAPPRIS P1 TSL 1 (best) BASIC16.69■□□□□ 0.26
Snrnp40Q6PE01 Gjc2-202ENSMUST00000108793 2187 ntAPPRIS P1 TSL 1 (best) BASIC16.69■□□□□ 0.26
Snrnp40Q6PE01 Lsr-203ENSMUST00000108116 2071 ntAPPRIS ALT2 TSL 1 (best) BASIC16.69■□□□□ 0.26
Snrnp40Q6PE01 Psmd3-201ENSMUST00000017365 2148 ntAPPRIS P1 TSL 1 (best) BASIC16.69■□□□□ 0.26
Snrnp40Q6PE01 Rcor3-203ENSMUST00000192128 1578 ntAPPRIS P3 TSL 1 (best) BASIC16.68■□□□□ 0.26
Snrnp40Q6PE01 Ubac1-201ENSMUST00000036509 1852 ntAPPRIS P2 TSL 1 (best) BASIC16.68■□□□□ 0.26
Snrnp40Q6PE01 Atox1-201ENSMUST00000108857 541 ntAPPRIS P1 TSL 1 (best) BASIC16.68■□□□□ 0.26
Snrnp40Q6PE01 Gm12979-201ENSMUST00000145488 405 ntTSL 2 BASIC16.68■□□□□ 0.26
Snrnp40Q6PE01 Tex30-212ENSMUST00000152239 1046 ntAPPRIS P1 TSL 1 (best) BASIC16.68■□□□□ 0.26
Snrnp40Q6PE01 H2-K2-201ENSMUST00000174250 1049 ntBASIC16.68■□□□□ 0.26
Snrnp40Q6PE01 Gfer-201ENSMUST00000046839 1775 ntAPPRIS P1 TSL 1 (best) BASIC16.68■□□□□ 0.26
Snrnp40Q6PE01 Mpzl1-202ENSMUST00000111435 2285 ntAPPRIS P1 TSL 1 (best) BASIC16.68■□□□□ 0.26
Snrnp40Q6PE01 H19-202ENSMUST00000136359 2286 ntTSL 1 (best) BASIC16.68■□□□□ 0.26
Snrnp40Q6PE01 Gm45472-201ENSMUST00000211295 1426 ntTSL 5 BASIC16.68■□□□□ 0.26
Snrnp40Q6PE01 Ankrd33b-203ENSMUST00000110410 2070 ntAPPRIS P3 TSL 1 (best) BASIC16.68■□□□□ 0.26
Snrnp40Q6PE01 Polr2m-201ENSMUST00000034720 2200 ntAPPRIS P1 TSL 1 (best) BASIC16.68■□□□□ 0.26
Snrnp40Q6PE01 Kalrn-208ENSMUST00000114961 6128 ntTSL 5 BASIC16.67■□□□□ 0.26
Snrnp40Q6PE01 Pkd2-201ENSMUST00000086831 5219 ntAPPRIS P1 TSL 1 (best) BASIC16.67■□□□□ 0.26
Snrnp40Q6PE01 Macrod2-207ENSMUST00000110067 4730 ntAPPRIS ALT2 TSL 5 BASIC16.67■□□□□ 0.26
Snrnp40Q6PE01 Tpm1-208ENSMUST00000113689 904 ntTSL 5 BASIC16.67■□□□□ 0.26
Snrnp40Q6PE01 Mir1199-201ENSMUST00000117015 119 ntBASIC16.67■□□□□ 0.26
Snrnp40Q6PE01 Gm14321-201ENSMUST00000127441 632 ntTSL 3 BASIC16.67■□□□□ 0.26
Snrnp40Q6PE01 D930007J09Rik-201ENSMUST00000057911 393 ntAPPRIS P1 BASIC16.67■□□□□ 0.26
Snrnp40Q6PE01 Nrn1l-201ENSMUST00000060167 617 ntAPPRIS P3 TSL 1 (best) BASIC16.67■□□□□ 0.26
Snrnp40Q6PE01 Cd37-209ENSMUST00000211373 1428 ntAPPRIS ALT2 TSL 1 (best) BASIC16.67■□□□□ 0.26
Snrnp40Q6PE01 Rab34-202ENSMUST00000056241 1558 ntTSL 5 BASIC16.67■□□□□ 0.26
Snrnp40Q6PE01 Slc9a2-203ENSMUST00000192345 2507 ntTSL 1 (best) BASIC16.66■□□□□ 0.26
Snrnp40Q6PE01 Lgmn-202ENSMUST00000110020 1835 ntAPPRIS P1 TSL 1 (best) BASIC16.66■□□□□ 0.26
Snrnp40Q6PE01 Gm15847-201ENSMUST00000121417 1065 ntBASIC16.66■□□□□ 0.26
Snrnp40Q6PE01 Arpc4-202ENSMUST00000171058 695 ntTSL 5 BASIC16.66■□□□□ 0.26
Snrnp40Q6PE01 2510002D24Rik-204ENSMUST00000191388 995 ntTSL 5 BASIC16.66■□□□□ 0.26
Snrnp40Q6PE01 Gm9484-201ENSMUST00000195892 1159 ntBASIC16.66■□□□□ 0.26
Snrnp40Q6PE01 1600023N17Rik-201ENSMUST00000196242 1007 ntBASIC16.66■□□□□ 0.26
Snrnp40Q6PE01 Lamtor5-202ENSMUST00000199317 743 ntAPPRIS P1 TSL 1 (best) BASIC16.66■□□□□ 0.26
Snrnp40Q6PE01 Gm19610-201ENSMUST00000202894 408 ntTSL 1 (best) BASIC16.66■□□□□ 0.26
Snrnp40Q6PE01 Zfp787-204ENSMUST00000207628 576 ntTSL 1 (best) BASIC16.66■□□□□ 0.26
Snrnp40Q6PE01 Clip1-205ENSMUST00000111566 6133 ntAPPRIS P3 TSL 1 (best) BASIC16.66■□□□□ 0.26
Snrnp40Q6PE01 Gramd1a-202ENSMUST00000085636 2543 ntAPPRIS ALT2 TSL 5 BASIC16.66■□□□□ 0.26
Snrnp40Q6PE01 Dlg3-202ENSMUST00000087984 4956 ntAPPRIS P1 TSL 1 (best) BASIC16.66■□□□□ 0.26
Snrnp40Q6PE01 AW121686-201ENSMUST00000181049 2200 ntTSL 1 (best) BASIC16.66■□□□□ 0.26
Snrnp40Q6PE01 Syt17-203ENSMUST00000203485 1932 ntTSL 1 (best) BASIC16.66■□□□□ 0.26
Snrnp40Q6PE01 Phb-204ENSMUST00000125172 1799 ntAPPRIS P1 TSL 1 (best) BASIC16.66■□□□□ 0.26
Snrnp40Q6PE01 Gab1-201ENSMUST00000034150 4870 ntAPPRIS P1 TSL 1 (best) BASIC16.66■□□□□ 0.26
Snrnp40Q6PE01 Prdm13-202ENSMUST00000095141 3173 ntAPPRIS P2 TSL 2 BASIC16.66■□□□□ 0.26
Snrnp40Q6PE01 Vgll2-202ENSMUST00000163017 1650 ntAPPRIS P3 TSL 1 (best) BASIC16.65■□□□□ 0.26
Snrnp40Q6PE01 Khdc3-201ENSMUST00000034737 1681 ntAPPRIS P3 TSL 1 (best) BASIC16.65■□□□□ 0.26
Snrnp40Q6PE01 Tnks2-201ENSMUST00000025729 6481 ntAPPRIS P1 TSL 5 BASIC16.65■□□□□ 0.26
Snrnp40Q6PE01 Paqr3-201ENSMUST00000069453 1375 ntAPPRIS P1 TSL 1 (best) BASIC16.65■□□□□ 0.26
Snrnp40Q6PE01 Gm13830-204ENSMUST00000149609 1851 ntTSL 1 (best) BASIC16.65■□□□□ 0.26
Snrnp40Q6PE01 Gm43672-201ENSMUST00000199072 1731 ntBASIC16.65■□□□□ 0.26
Snrnp40Q6PE01 Srsf10-203ENSMUST00000102544 2225 ntTSL 1 (best) BASIC16.65■□□□□ 0.26
Snrnp40Q6PE01 Jak2-201ENSMUST00000025705 4947 ntAPPRIS P1 TSL 5 BASIC16.65■□□□□ 0.26
Snrnp40Q6PE01 Stau2-201ENSMUST00000027052 2763 ntTSL 1 (best) BASIC16.65■□□□□ 0.26
Snrnp40Q6PE01 Atp5c1-203ENSMUST00000114897 1166 ntAPPRIS P2 TSL 1 (best) BASIC16.65■□□□□ 0.26
Snrnp40Q6PE01 Gm13158-201ENSMUST00000122007 736 ntBASIC16.65■□□□□ 0.26
Snrnp40Q6PE01 Gm11713-201ENSMUST00000139941 523 ntTSL 3 BASIC16.65■□□□□ 0.26
Snrnp40Q6PE01 AC122465.1-201ENSMUST00000220813 1209 ntTSL 1 (best) BASIC16.65■□□□□ 0.26
Snrnp40Q6PE01 Cst3-201ENSMUST00000028938 860 ntAPPRIS P1 TSL 1 (best) BASIC16.65■□□□□ 0.26
Snrnp40Q6PE01 Ltbr-201ENSMUST00000032489 2107 ntAPPRIS P1 TSL 1 (best) BASIC16.65■□□□□ 0.26
Snrnp40Q6PE01 Id1-201ENSMUST00000038368 934 ntAPPRIS P2 TSL 1 (best) BASIC16.65■□□□□ 0.26
Snrnp40Q6PE01 Avp-201ENSMUST00000046001 577 ntAPPRIS P1 TSL 1 (best) BASIC16.65■□□□□ 0.26
Snrnp40Q6PE01 CT010444.2-201ENSMUST00000217877 1629 ntBASIC16.65■□□□□ 0.26
Snrnp40Q6PE01 Cacnb3-202ENSMUST00000109150 2670 ntTSL 5 BASIC16.65■□□□□ 0.26
Snrnp40Q6PE01 Osbp-201ENSMUST00000025590 4578 ntAPPRIS P1 TSL 5 BASIC16.65■□□□□ 0.26
Snrnp40Q6PE01 Snrnp70-201ENSMUST00000074575 1735 ntAPPRIS P1 TSL 1 (best) BASIC16.65■□□□□ 0.26
Snrnp40Q6PE01 5031439G07Rik-201ENSMUST00000047144 6845 ntAPPRIS P1 TSL 1 (best) BASIC16.65■□□□□ 0.26
Snrnp40Q6PE01 Kcnj12-202ENSMUST00000089184 2291 ntAPPRIS P3 TSL 1 (best) BASIC16.65■□□□□ 0.26
Snrnp40Q6PE01 Gnl1-201ENSMUST00000087200 2848 ntAPPRIS P1 TSL 1 (best) BASIC16.65■□□□□ 0.26
Snrnp40Q6PE01 Galnt16-204ENSMUST00000218943 2047 ntAPPRIS P1 TSL 1 (best) BASIC16.64■□□□□ 0.25
Snrnp40Q6PE01 Rnaset2b-202ENSMUST00000179728 2448 ntAPPRIS P1 TSL 1 (best) BASIC16.64■□□□□ 0.25
Snrnp40Q6PE01 Gm11643-201ENSMUST00000119578 864 ntBASIC16.64■□□□□ 0.25
Snrnp40Q6PE01 Cpne1-217ENSMUST00000184265 871 ntTSL 5 BASIC16.64■□□□□ 0.25
Snrnp40Q6PE01 Gm44238-201ENSMUST00000203300 353 ntTSL 3 BASIC16.64■□□□□ 0.25
Snrnp40Q6PE01 4930554C24Rik-202ENSMUST00000216019 1159 ntTSL 5 BASIC16.64■□□□□ 0.25
Snrnp40Q6PE01 Fitm1-201ENSMUST00000022826 971 ntAPPRIS P1 TSL 1 (best) BASIC16.64■□□□□ 0.25
Snrnp40Q6PE01 Prrg2-201ENSMUST00000007981 1295 ntAPPRIS P2 TSL 1 (best) BASIC16.64■□□□□ 0.25
Snrnp40Q6PE01 Gm7579-201ENSMUST00000097943 732 ntAPPRIS P1 BASIC16.64■□□□□ 0.25
Snrnp40Q6PE01 Tcf7l1-202ENSMUST00000114053 1888 ntAPPRIS ALT2 TSL 1 (best) BASIC16.64■□□□□ 0.25
Retrieved 100 of 76,532 protein–RNA pairs in 34.2 ms