Protein–RNA interactions for Protein: Q6PDX6

Rnf220, E3 ubiquitin-protein ligase Rnf220, mousemouse

Predictions only

Length 566 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Rnf220Q6PDX6 Zfp768-201ENSMUST00000060783 2356 ntAPPRIS P2 TSL 1 (best) BASIC17.84■□□□□ 0.45
Rnf220Q6PDX6 Nubp1-201ENSMUST00000023146 2121 ntAPPRIS P1 TSL 1 (best) BASIC17.84■□□□□ 0.45
Rnf220Q6PDX6 Ascl4-202ENSMUST00000170396 2016 ntAPPRIS P1 BASIC17.84■□□□□ 0.45
Rnf220Q6PDX6 Klhdc3-202ENSMUST00000165007 1973 ntAPPRIS P1 TSL 1 (best) BASIC17.84■□□□□ 0.45
Rnf220Q6PDX6 Atp9a-211ENSMUST00000178504 3668 ntAPPRIS P1 TSL 5 BASIC17.84■□□□□ 0.45
Rnf220Q6PDX6 Eif5a-213ENSMUST00000164359 1281 ntAPPRIS P1 TSL 5 BASIC17.84■□□□□ 0.45
Rnf220Q6PDX6 Mpv17l2-201ENSMUST00000038626 980 ntAPPRIS P1 TSL 1 (best) BASIC17.84■□□□□ 0.45
Rnf220Q6PDX6 Ttc36-201ENSMUST00000044694 888 ntAPPRIS P1 TSL 1 (best) BASIC17.84■□□□□ 0.45
Rnf220Q6PDX6 Rpl34-201ENSMUST00000062601 624 ntAPPRIS P1 TSL 1 (best) BASIC17.84■□□□□ 0.45
Rnf220Q6PDX6 Arhgef19-201ENSMUST00000006618 3414 ntAPPRIS P1 TSL 1 (best) BASIC17.84■□□□□ 0.45
Rnf220Q6PDX6 Ooep-201ENSMUST00000034900 2138 ntAPPRIS P1 TSL 1 (best) BASIC17.84■□□□□ 0.45
Rnf220Q6PDX6 Iqsec2-207ENSMUST00000168786 5993 ntAPPRIS ALT2 TSL 1 (best) BASIC17.84■□□□□ 0.45
Rnf220Q6PDX6 Prdm8-201ENSMUST00000112959 4553 ntAPPRIS P1 TSL 1 (best) BASIC17.84■□□□□ 0.45
Rnf220Q6PDX6 Prkg2-201ENSMUST00000031277 2618 ntTSL 5 BASIC17.84■□□□□ 0.45
Rnf220Q6PDX6 Cdh4-201ENSMUST00000000314 6388 ntAPPRIS P1 TSL 1 (best) BASIC17.83■□□□□ 0.45
Rnf220Q6PDX6 Znrf1-205ENSMUST00000172856 4600 ntAPPRIS P1 TSL 5 BASIC17.83■□□□□ 0.45
Rnf220Q6PDX6 Eif2ak4-207ENSMUST00000110877 2134 ntTSL 1 (best) BASIC17.83■□□□□ 0.45
Rnf220Q6PDX6 4930540M05Rik-201ENSMUST00000180527 2068 ntTSL 1 (best) BASIC17.83■□□□□ 0.45
Rnf220Q6PDX6 Ube2e3-202ENSMUST00000121433 1235 ntAPPRIS P1 TSL 5 BASIC17.83■□□□□ 0.44
Rnf220Q6PDX6 Ddrgk1-201ENSMUST00000089559 1238 ntAPPRIS P1 TSL 1 (best) BASIC17.83■□□□□ 0.44
Rnf220Q6PDX6 Tlx2-201ENSMUST00000089641 1236 ntAPPRIS P1 TSL 1 (best) BASIC17.83■□□□□ 0.44
Rnf220Q6PDX6 Nrl-201ENSMUST00000062232 2504 ntAPPRIS P1 TSL 1 (best) BASIC17.83■□□□□ 0.44
Rnf220Q6PDX6 Lrfn1-202ENSMUST00000108288 3060 ntAPPRIS ALT2 TSL 1 (best) BASIC17.83■□□□□ 0.44
Rnf220Q6PDX6 Dtnb-222ENSMUST00000174479 3689 ntTSL 1 (best) BASIC17.83■□□□□ 0.44
Rnf220Q6PDX6 Rhbdd3-201ENSMUST00000036320 1790 ntTSL 1 (best) BASIC17.83■□□□□ 0.44
Rnf220Q6PDX6 Zscan12-201ENSMUST00000053293 2270 ntAPPRIS P1 TSL 1 (best) BASIC17.83■□□□□ 0.44
Rnf220Q6PDX6 Ankrd33b-202ENSMUST00000076942 1641 ntTSL 1 (best) BASIC17.83■□□□□ 0.44
Rnf220Q6PDX6 Blcap-202ENSMUST00000109528 2056 ntAPPRIS P1 TSL 1 (best) BASIC17.83■□□□□ 0.44
Rnf220Q6PDX6 Becn1-217ENSMUST00000172233 1493 ntTSL 5 BASIC17.82■□□□□ 0.44
Rnf220Q6PDX6 Fam222a-201ENSMUST00000043650 2930 ntAPPRIS P1 TSL 1 (best) BASIC17.82■□□□□ 0.44
Rnf220Q6PDX6 Zfp653-202ENSMUST00000179605 1888 ntAPPRIS ALT2 TSL 1 (best) BASIC17.82■□□□□ 0.44
Rnf220Q6PDX6 Rnf103-201ENSMUST00000064637 3264 ntAPPRIS P1 TSL 1 (best) BASIC17.82■□□□□ 0.44
Rnf220Q6PDX6 Efnb3-201ENSMUST00000004036 3183 ntAPPRIS P1 TSL 1 (best) BASIC17.82■□□□□ 0.44
Rnf220Q6PDX6 Slit3-201ENSMUST00000069837 5228 ntAPPRIS P1 TSL 1 (best) BASIC17.82■□□□□ 0.44
Rnf220Q6PDX6 Syt6-205ENSMUST00000121834 1710 ntAPPRIS P1 TSL 1 (best) BASIC17.82■□□□□ 0.44
Rnf220Q6PDX6 Kcnip2-208ENSMUST00000161886 693 ntAPPRIS P3 TSL 1 (best) BASIC17.82■□□□□ 0.44
Rnf220Q6PDX6 Vegfa-211ENSMUST00000167860 975 ntTSL 1 (best) BASIC17.82■□□□□ 0.44
Rnf220Q6PDX6 Vegfa-213ENSMUST00000217017 1179 ntAPPRIS P4 TSL 1 (best) BASIC17.82■□□□□ 0.44
Rnf220Q6PDX6 Gm9767-201ENSMUST00000041011 1193 ntAPPRIS P1 BASIC17.82■□□□□ 0.44
Rnf220Q6PDX6 Blcap-201ENSMUST00000088494 2108 ntAPPRIS P1 TSL 1 (best) BASIC17.82■□□□□ 0.44
Rnf220Q6PDX6 Ccne1-201ENSMUST00000108023 2000 ntAPPRIS P1 TSL 1 (best) BASIC17.82■□□□□ 0.44
Rnf220Q6PDX6 Cdca3-201ENSMUST00000024270 1976 ntAPPRIS P1 TSL 1 (best) BASIC17.82■□□□□ 0.44
Rnf220Q6PDX6 Acvrl1-206ENSMUST00000121718 1906 ntAPPRIS P1 TSL 1 (best) BASIC17.82■□□□□ 0.44
Rnf220Q6PDX6 Rnf157-202ENSMUST00000106398 4553 ntAPPRIS ALT2 TSL 5 BASIC17.82■□□□□ 0.44
Rnf220Q6PDX6 Fgf4-201ENSMUST00000060336 3030 ntAPPRIS P1 TSL 1 (best) BASIC17.82■□□□□ 0.44
Rnf220Q6PDX6 Nploc4-201ENSMUST00000044271 4121 ntAPPRIS P1 TSL 1 (best) BASIC17.82■□□□□ 0.44
Rnf220Q6PDX6 Akt1s1-204ENSMUST00000107885 1812 ntAPPRIS ALT2 TSL 1 (best) BASIC17.82■□□□□ 0.44
Rnf220Q6PDX6 Hps4-201ENSMUST00000035279 2836 ntAPPRIS P1 TSL 1 (best) BASIC17.81■□□□□ 0.44
Rnf220Q6PDX6 Fkbp5-201ENSMUST00000079413 3542 ntAPPRIS P1 TSL 1 (best) BASIC17.81■□□□□ 0.44
Rnf220Q6PDX6 Pgam5-202ENSMUST00000112505 2098 ntAPPRIS ALT1 TSL 1 (best) BASIC17.81■□□□□ 0.44
Rnf220Q6PDX6 Gm3667-201ENSMUST00000171906 2053 ntAPPRIS P1 TSL 5 BASIC17.81■□□□□ 0.44
Rnf220Q6PDX6 1700030C10Rik-203ENSMUST00000189625 1735 ntTSL 1 (best) BASIC17.81■□□□□ 0.44
Rnf220Q6PDX6 Gm572-201ENSMUST00000105698 1385 ntAPPRIS P1 TSL 5 BASIC17.81■□□□□ 0.44
Rnf220Q6PDX6 Ctcf-201ENSMUST00000005841 3782 ntAPPRIS P1 TSL 1 (best) BASIC17.81■□□□□ 0.44
Rnf220Q6PDX6 Gm2464-202ENSMUST00000194841 877 ntTSL 1 (best) BASIC17.81■□□□□ 0.44
Rnf220Q6PDX6 Gadd45a-207ENSMUST00000204369 716 ntTSL 5 BASIC17.81■□□□□ 0.44
Rnf220Q6PDX6 Gm29735-201ENSMUST00000209599 660 ntAPPRIS P1 BASIC17.81■□□□□ 0.44
Rnf220Q6PDX6 Nek9-201ENSMUST00000040992 5386 ntAPPRIS P1 TSL 1 (best) BASIC17.81■□□□□ 0.44
Rnf220Q6PDX6 Ube2d3-202ENSMUST00000166033 2504 ntAPPRIS P2 TSL 1 (best) BASIC17.81■□□□□ 0.44
Rnf220Q6PDX6 Zfp644-205ENSMUST00000112698 5689 ntAPPRIS P2 TSL 5 BASIC17.81■□□□□ 0.44
Rnf220Q6PDX6 Ankle2-202ENSMUST00000086674 5025 ntAPPRIS ALT2 TSL 5 BASIC17.81■□□□□ 0.44
Rnf220Q6PDX6 Slc30a9-201ENSMUST00000113676 5648 ntAPPRIS ALT2 TSL 1 (best) BASIC17.81■□□□□ 0.44
Rnf220Q6PDX6 Tmem198-202ENSMUST00000113575 2185 ntAPPRIS P1 TSL 1 (best) BASIC17.81■□□□□ 0.44
Rnf220Q6PDX6 Klhl36-201ENSMUST00000034287 2181 ntAPPRIS P1 TSL 1 (best) BASIC17.81■□□□□ 0.44
Rnf220Q6PDX6 4930507D05Rik-201ENSMUST00000181110 1834 ntAPPRIS P1 BASIC17.81■□□□□ 0.44
Rnf220Q6PDX6 Krt87-201ENSMUST00000081945 1826 ntAPPRIS P1 TSL 1 (best) BASIC17.81■□□□□ 0.44
Rnf220Q6PDX6 Art5-204ENSMUST00000106937 1713 ntAPPRIS P1 TSL 1 (best) BASIC17.81■□□□□ 0.44
Rnf220Q6PDX6 Dnm2-204ENSMUST00000165766 3063 ntTSL 1 (best) BASIC17.8■□□□□ 0.44
Rnf220Q6PDX6 Zdhhc13-201ENSMUST00000118927 2410 ntAPPRIS P1 TSL 1 (best) BASIC17.8■□□□□ 0.44
Rnf220Q6PDX6 Kmt5b-203ENSMUST00000113968 3216 ntAPPRIS ALT2 TSL 1 (best) BASIC17.8■□□□□ 0.44
Rnf220Q6PDX6 Amacr-201ENSMUST00000070877 2577 ntAPPRIS P1 TSL 1 (best) BASIC17.8■□□□□ 0.44
Rnf220Q6PDX6 Zfp629-208ENSMUST00000151107 583 ntTSL 3 BASIC17.8■□□□□ 0.44
Rnf220Q6PDX6 4930519A11Rik-201ENSMUST00000181381 1523 ntTSL 1 (best) BASIC17.8■□□□□ 0.44
Rnf220Q6PDX6 Cdk19-201ENSMUST00000044672 5807 ntAPPRIS P1 TSL 1 (best) BASIC17.8■□□□□ 0.44
Rnf220Q6PDX6 Usp36-202ENSMUST00000106296 5655 ntAPPRIS P1 TSL 5 BASIC17.8■□□□□ 0.44
Rnf220Q6PDX6 Cryzl1-203ENSMUST00000117644 1727 ntTSL 1 (best) BASIC17.8■□□□□ 0.44
Rnf220Q6PDX6 6330403K07Rik-201ENSMUST00000156068 1494 ntTSL 1 (best) BASIC17.8■□□□□ 0.44
Rnf220Q6PDX6 Celf6-204ENSMUST00000121266 2610 ntTSL 1 (best) BASIC17.8■□□□□ 0.44
Rnf220Q6PDX6 Pomgnt2-201ENSMUST00000084743 2365 ntAPPRIS P1 TSL 1 (best) BASIC17.8■□□□□ 0.44
Rnf220Q6PDX6 Grip1-201ENSMUST00000041962 5343 ntAPPRIS ALT2 TSL 1 (best) BASIC17.79■□□□□ 0.44
Rnf220Q6PDX6 Pdcl3-201ENSMUST00000027247 3914 ntAPPRIS P1 TSL 1 (best) BASIC17.79■□□□□ 0.44
Rnf220Q6PDX6 Chmp2b-201ENSMUST00000004965 1838 ntAPPRIS P1 TSL 1 (best) BASIC17.79■□□□□ 0.44
Rnf220Q6PDX6 Il4i1-202ENSMUST00000118125 2275 ntAPPRIS ALT2 TSL 2 BASIC17.79■□□□□ 0.44
Rnf220Q6PDX6 Gm6598-201ENSMUST00000202719 2615 ntBASIC17.79■□□□□ 0.44
Rnf220Q6PDX6 Maff-202ENSMUST00000163691 1905 ntAPPRIS P1 TSL 1 (best) BASIC17.79■□□□□ 0.44
Rnf220Q6PDX6 Eif4enif1-203ENSMUST00000110049 3614 ntAPPRIS P1 TSL 1 (best) BASIC17.79■□□□□ 0.44
Rnf220Q6PDX6 Gm35161-201ENSMUST00000221765 941 ntTSL 5 BASIC17.79■□□□□ 0.44
Rnf220Q6PDX6 Gm7143-201ENSMUST00000222811 859 ntBASIC17.79■□□□□ 0.44
Rnf220Q6PDX6 Gm40881-201ENSMUST00000223397 166 ntBASIC17.79■□□□□ 0.44
Rnf220Q6PDX6 Srcap-202ENSMUST00000098025 1257 ntTSL 5 BASIC17.79■□□□□ 0.44
Rnf220Q6PDX6 Gm16201-202ENSMUST00000139218 2330 ntTSL 1 (best) BASIC17.79■□□□□ 0.44
Rnf220Q6PDX6 Cyth2-201ENSMUST00000056820 2527 ntAPPRIS ALT1 TSL 1 (best) BASIC17.79■□□□□ 0.44
Rnf220Q6PDX6 Arhgap44-202ENSMUST00000093001 2256 ntTSL 2 BASIC17.79■□□□□ 0.44
Rnf220Q6PDX6 Smarca4-201ENSMUST00000034707 6354 ntAPPRIS P3 TSL 1 (best) BASIC17.79■□□□□ 0.44
Rnf220Q6PDX6 Atp9a-203ENSMUST00000109176 3691 ntTSL 1 (best) BASIC17.79■□□□□ 0.44
Rnf220Q6PDX6 P2rx5-201ENSMUST00000006104 2395 ntAPPRIS P1 TSL 1 (best) BASIC17.79■□□□□ 0.44
Rnf220Q6PDX6 4930474N05Rik-203ENSMUST00000226305 2313 ntAPPRIS P1 BASIC17.78■□□□□ 0.44
Rnf220Q6PDX6 Zbtb7c-202ENSMUST00000167921 2147 ntAPPRIS P1 TSL 1 (best) BASIC17.78■□□□□ 0.44
Rnf220Q6PDX6 Foxa2-201ENSMUST00000047315 2128 ntAPPRIS P3 TSL 1 (best) BASIC17.78■□□□□ 0.44
Rnf220Q6PDX6 Lrig1-201ENSMUST00000032105 4831 ntAPPRIS P1 TSL 1 (best) BASIC17.78■□□□□ 0.44
Retrieved 100 of 76,532 protein–RNA pairs in 39 ms