Protein–RNA interactions for Protein: Q63870

Col7a1, Collagen alpha-1(VII) chain, mousemouse

Predictions only

Length 2,944 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Col7a1Q63870 Tex30-206ENSMUST00000133677 935 ntAPPRIS P1 TSL 1 (best) BASIC15.94■□□□□ 0.14
Col7a1Q63870 1700019N19Rik-201ENSMUST00000028299 970 ntAPPRIS P2 TSL 1 (best) BASIC15.94■□□□□ 0.14
Col7a1Q63870 Pomgnt1-203ENSMUST00000106498 2719 ntAPPRIS P1 TSL 1 (best) BASIC15.93■□□□□ 0.14
Col7a1Q63870 Hist1h2bf-201ENSMUST00000105106 461 ntAPPRIS P1 BASIC15.93■□□□□ 0.14
Col7a1Q63870 AC156016.1-201ENSMUST00000227190 1035 ntBASIC15.93■□□□□ 0.14
Col7a1Q63870 Aqp2-201ENSMUST00000023752 1416 ntAPPRIS P1 TSL 1 (best) BASIC15.93■□□□□ 0.14
Col7a1Q63870 Pgam5-201ENSMUST00000059229 2044 ntAPPRIS P3 TSL 1 (best) BASIC15.93■□□□□ 0.14
Col7a1Q63870 Gm15889-201ENSMUST00000159142 1083 ntTSL 3 BASIC15.93■□□□□ 0.14
Col7a1Q63870 AI480526-205ENSMUST00000160255 1095 ntTSL 5 BASIC15.93■□□□□ 0.14
Col7a1Q63870 Gm17661-201ENSMUST00000170317 270 ntBASIC15.93■□□□□ 0.14
Col7a1Q63870 AC140264.2-201ENSMUST00000219668 289 ntTSL 2 BASIC15.93■□□□□ 0.14
Col7a1Q63870 Kctd15-202ENSMUST00000108069 2407 ntAPPRIS P1 TSL 5 BASIC15.93■□□□□ 0.14
Col7a1Q63870 Rhbdd3-201ENSMUST00000036320 1790 ntTSL 1 (best) BASIC15.92■□□□□ 0.14
Col7a1Q63870 Dtnb-216ENSMUST00000173736 2175 ntAPPRIS ALT2 TSL 5 BASIC15.92■□□□□ 0.14
Col7a1Q63870 Pemt-203ENSMUST00000102693 961 ntTSL 1 (best) BASIC15.92■□□□□ 0.14
Col7a1Q63870 Ramp2-204ENSMUST00000129680 1178 ntAPPRIS P2 TSL 1 (best) BASIC15.92■□□□□ 0.14
Col7a1Q63870 Cldn24-201ENSMUST00000079639 663 ntAPPRIS P1 BASIC15.92■□□□□ 0.14
Col7a1Q63870 Hoxb6-202ENSMUST00000173432 1964 ntAPPRIS P1 TSL 5 BASIC15.92■□□□□ 0.14
Col7a1Q63870 Dhodh-209ENSMUST00000143900 1455 ntTSL 5 BASIC15.92■□□□□ 0.14
Col7a1Q63870 AW822252-206ENSMUST00000208904 237 ntBASIC15.92■□□□□ 0.14
Col7a1Q63870 Elof1-204ENSMUST00000214394 567 ntAPPRIS P1 TSL 2 BASIC15.92■□□□□ 0.14
Col7a1Q63870 Hsbp1-201ENSMUST00000034300 1208 ntAPPRIS P1 TSL 1 (best) BASIC15.92■□□□□ 0.14
Col7a1Q63870 Cldn18-203ENSMUST00000131922 860 ntTSL 1 (best) BASIC15.91■□□□□ 0.14
Col7a1Q63870 4430402I18Rik-201ENSMUST00000025872 2152 ntTSL 1 (best) BASIC15.91■□□□□ 0.14
Col7a1Q63870 Fam159b-201ENSMUST00000043061 1310 ntAPPRIS P1 TSL 1 (best) BASIC15.91■□□□□ 0.14
Col7a1Q63870 Lsm12-201ENSMUST00000021297 2256 ntAPPRIS P1 TSL 1 (best) BASIC15.91■□□□□ 0.14
Col7a1Q63870 Sapcd2-203ENSMUST00000114293 1600 ntAPPRIS ALT2 TSL 1 (best) BASIC15.91■□□□□ 0.14
Col7a1Q63870 Gm14968-201ENSMUST00000155528 769 ntTSL 3 BASIC15.91■□□□□ 0.14
Col7a1Q63870 Tpsg1-202ENSMUST00000160377 1040 ntTSL 1 (best) BASIC15.91■□□□□ 0.14
Col7a1Q63870 Trappc6a-201ENSMUST00000002112 785 ntAPPRIS P1 TSL 1 (best) BASIC15.91■□□□□ 0.14
Col7a1Q63870 C430049E01Rik-201ENSMUST00000207913 1820 ntAPPRIS P1 TSL 1 (best) BASIC15.91■□□□□ 0.14
Col7a1Q63870 Lzts2-202ENSMUST00000178087 2773 ntAPPRIS P1 TSL 1 (best) BASIC15.91■□□□□ 0.14
Col7a1Q63870 Acy3-201ENSMUST00000054030 1505 ntAPPRIS P1 TSL 1 (best) BASIC15.91■□□□□ 0.14
Col7a1Q63870 Mbp-208ENSMUST00000114676 1685 ntTSL 1 (best) BASIC15.91■□□□□ 0.14
Col7a1Q63870 Tmem192-201ENSMUST00000026595 1122 ntAPPRIS P1 TSL 1 (best) BASIC15.91■□□□□ 0.14
Col7a1Q63870 Grcc10-201ENSMUST00000004389 863 ntAPPRIS P1 TSL 1 (best) BASIC15.91■□□□□ 0.14
Col7a1Q63870 Vstm2b-203ENSMUST00000205845 1455 ntAPPRIS P1 TSL 1 (best) BASIC15.9■□□□□ 0.14
Col7a1Q63870 Gm26644-201ENSMUST00000181365 958 ntTSL 1 (best) BASIC15.9■□□□□ 0.14
Col7a1Q63870 Gm38973-201ENSMUST00000206810 878 ntTSL 1 (best) BASIC15.9■□□□□ 0.14
Col7a1Q63870 Hint2-201ENSMUST00000030192 610 ntAPPRIS P1 TSL 1 (best) BASIC15.9■□□□□ 0.14
Col7a1Q63870 Acp5-204ENSMUST00000213815 1419 ntAPPRIS P1 TSL 5 BASIC15.9■□□□□ 0.14
Col7a1Q63870 Acp5-206ENSMUST00000217643 1447 ntAPPRIS P1 TSL 5 BASIC15.9■□□□□ 0.14
Col7a1Q63870 Gm7712-202ENSMUST00000222331 1510 ntBASIC15.9■□□□□ 0.14
Col7a1Q63870 AC122428.2-201ENSMUST00000216321 1832 ntBASIC15.9■□□□□ 0.14
Col7a1Q63870 Lsm14b-201ENSMUST00000055485 2534 ntAPPRIS P1 TSL 1 (best) BASIC15.9■□□□□ 0.14
Col7a1Q63870 Ppic-201ENSMUST00000025419 1286 ntAPPRIS P1 TSL 1 (best) BASIC15.9■□□□□ 0.14
Col7a1Q63870 Zfp771-201ENSMUST00000052509 1484 ntAPPRIS P1 TSL 1 (best) BASIC15.9■□□□□ 0.14
Col7a1Q63870 Snrnp70-201ENSMUST00000074575 1735 ntAPPRIS P1 TSL 1 (best) BASIC15.9■□□□□ 0.14
Col7a1Q63870 Terf2-202ENSMUST00000068421 2667 ntAPPRIS ALT2 TSL 5 BASIC15.89■□□□□ 0.13
Col7a1Q63870 Etnk1-203ENSMUST00000204947 1791 ntTSL 1 (best) BASIC15.89■□□□□ 0.13
Col7a1Q63870 Gtf3a-201ENSMUST00000132102 1426 ntAPPRIS ALT2 TSL 1 (best) BASIC15.89■□□□□ 0.13
Col7a1Q63870 Hrh3-202ENSMUST00000163215 1401 ntTSL 5 BASIC15.89■□□□□ 0.13
Col7a1Q63870 Prrg2-201ENSMUST00000007981 1295 ntAPPRIS P2 TSL 1 (best) BASIC15.89■□□□□ 0.13
Col7a1Q63870 Lrrc1-205ENSMUST00000183873 3121 ntAPPRIS P1 TSL 1 (best) BASIC15.89■□□□□ 0.13
Col7a1Q63870 Sirt7-202ENSMUST00000106183 427 ntTSL 3 BASIC15.89■□□□□ 0.13
Col7a1Q63870 Gm26620-201ENSMUST00000180542 817 ntAPPRIS P1 BASIC15.89■□□□□ 0.13
Col7a1Q63870 Fxyd1-208ENSMUST00000205807 539 ntTSL 3 BASIC15.89■□□□□ 0.13
Col7a1Q63870 Thoc7-201ENSMUST00000065865 937 ntAPPRIS P1 TSL 1 (best) BASIC15.89■□□□□ 0.13
Col7a1Q63870 Pitx2-201ENSMUST00000029657 1680 ntTSL 5 BASIC15.89■□□□□ 0.13
Col7a1Q63870 Msx3-202ENSMUST00000172775 2070 ntAPPRIS P1 TSL 1 (best) BASIC15.89■□□□□ 0.13
Col7a1Q63870 Hrh3-204ENSMUST00000165248 1224 ntAPPRIS ALT2 TSL 5 BASIC15.88■□□□□ 0.13
Col7a1Q63870 Dusp13-208ENSMUST00000183698 1019 ntTSL 5 BASIC15.88■□□□□ 0.13
Col7a1Q63870 Gm6443-201ENSMUST00000203599 874 ntBASIC15.88■□□□□ 0.13
Col7a1Q63870 Zfp821-206ENSMUST00000212964 2033 ntTSL 1 (best) BASIC15.88■□□□□ 0.13
Col7a1Q63870 Gas2l1-201ENSMUST00000037146 2686 ntAPPRIS ALT2 TSL 1 (best) BASIC15.88■□□□□ 0.13
Col7a1Q63870 Mgrn1-202ENSMUST00000070658 3290 ntAPPRIS P3 TSL 1 (best) BASIC15.88■□□□□ 0.13
Col7a1Q63870 Kis2-201ENSMUST00000133214 1717 ntTSL 1 (best) BASIC15.88■□□□□ 0.13
Col7a1Q63870 Aicda-202ENSMUST00000160685 1292 ntTSL 1 (best) BASIC15.88■□□□□ 0.13
Col7a1Q63870 4930432B10Rik-202ENSMUST00000181330 1612 ntTSL 1 (best) BASIC15.88■□□□□ 0.13
Col7a1Q63870 Guca1b-202ENSMUST00000145462 1556 ntTSL 2 BASIC15.88■□□□□ 0.13
Col7a1Q63870 Rem2-202ENSMUST00000164766 1884 ntAPPRIS P1 TSL 1 (best) BASIC15.88■□□□□ 0.13
Col7a1Q63870 Anp32e-201ENSMUST00000015893 1381 ntAPPRIS ALT2 TSL 1 (best) BASIC15.88■□□□□ 0.13
Col7a1Q63870 Epo-203ENSMUST00000111039 706 ntAPPRIS ALT2 TSL 1 (best) BASIC15.88■□□□□ 0.13
Col7a1Q63870 Tm2d1-201ENSMUST00000030292 952 ntTSL 1 (best) BASIC15.88■□□□□ 0.13
Col7a1Q63870 Mgarp-201ENSMUST00000038154 1232 ntAPPRIS P2 TSL 1 (best) BASIC15.88■□□□□ 0.13
Col7a1Q63870 Spc25-202ENSMUST00000112320 1527 ntAPPRIS ALT2 TSL 1 (best) BASIC15.88■□□□□ 0.13
Col7a1Q63870 Hck-203ENSMUST00000189688 2090 ntAPPRIS ALT2 TSL 1 (best) BASIC15.87■□□□□ 0.13
Col7a1Q63870 Alg9-201ENSMUST00000034561 2873 ntAPPRIS P1 TSL 1 (best) BASIC15.87■□□□□ 0.13
Col7a1Q63870 Txnl4a-204ENSMUST00000145963 1756 ntAPPRIS P1 TSL 1 (best) BASIC15.87■□□□□ 0.13
Col7a1Q63870 Syndig1l-201ENSMUST00000095550 2524 ntAPPRIS P1 TSL 1 (best) BASIC15.87■□□□□ 0.13
Col7a1Q63870 0610012G03Rik-201ENSMUST00000202722 1445 ntAPPRIS P1 BASIC15.87■□□□□ 0.13
Col7a1Q63870 P4ha3-201ENSMUST00000057023 2361 ntAPPRIS P1 TSL 1 (best) BASIC15.87■□□□□ 0.13
Col7a1Q63870 Fam71e1-202ENSMUST00000205359 1307 ntAPPRIS ALT2 TSL 2 BASIC15.87■□□□□ 0.13
Col7a1Q63870 Tsen2-203ENSMUST00000130425 638 ntTSL 3 BASIC15.87■□□□□ 0.13
Col7a1Q63870 Fbxo27-203ENSMUST00000108281 1948 ntAPPRIS ALT2 TSL 1 (best) BASIC15.87■□□□□ 0.13
Col7a1Q63870 Smyd2-201ENSMUST00000027897 1680 ntAPPRIS P1 TSL 1 (best) BASIC15.87■□□□□ 0.13
Col7a1Q63870 Pdcd4-201ENSMUST00000025931 2330 ntAPPRIS P1 TSL 1 (best) BASIC15.87■□□□□ 0.13
Col7a1Q63870 Gm16262-201ENSMUST00000162306 1751 ntTSL 1 (best) BASIC15.87■□□□□ 0.13
Col7a1Q63870 Slc35e2-203ENSMUST00000118607 2166 ntAPPRIS P1 TSL 1 (best) BASIC15.87■□□□□ 0.13
Col7a1Q63870 Ccdc9-201ENSMUST00000041010 2379 ntAPPRIS P3 TSL 1 (best) BASIC15.87■□□□□ 0.13
Col7a1Q63870 Ccr10-201ENSMUST00000062759 1726 ntAPPRIS P1 TSL 1 (best) BASIC15.86■□□□□ 0.13
Col7a1Q63870 Rfx5-205ENSMUST00000107260 2355 ntAPPRIS P1 TSL 5 BASIC15.86■□□□□ 0.13
Col7a1Q63870 Zfp691-202ENSMUST00000106355 1588 ntAPPRIS P1 TSL 1 (best) BASIC15.86■□□□□ 0.13
Col7a1Q63870 Cgrrf1-204ENSMUST00000140114 419 ntTSL 1 (best) BASIC15.86■□□□□ 0.13
Col7a1Q63870 Snrnp48-202ENSMUST00000178564 847 ntTSL 5 BASIC15.86■□□□□ 0.13
Col7a1Q63870 Cdkn2c-201ENSMUST00000063531 1106 ntAPPRIS P1 TSL 1 (best) BASIC15.86■□□□□ 0.13
Col7a1Q63870 5033417F24Rik-201ENSMUST00000181575 1787 ntTSL 1 (best) BASIC15.86■□□□□ 0.13
Col7a1Q63870 Mafg-202ENSMUST00000106180 732 ntAPPRIS P1 TSL 2 BASIC15.85■□□□□ 0.13
Col7a1Q63870 Mafg-204ENSMUST00000106182 1104 ntAPPRIS P1 TSL 2 BASIC15.85■□□□□ 0.13
Col7a1Q63870 Zkscan8-202ENSMUST00000110481 728 ntTSL 2 BASIC15.85■□□□□ 0.13
Retrieved 100 of 76,532 protein–RNA pairs in 21.3 ms