Protein–RNA interactions for Protein: Q61245

Col11a1, Collagen alpha-1(XI) chain, mousemouse

Predictions only

Length 1,804 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Col11a1Q61245 Vstm2b-203ENSMUST00000205845 1455 ntAPPRIS P1 TSL 1 (best) BASIC21.52■■□□□ 1.04
Col11a1Q61245 Tspan4-201ENSMUST00000026585 1466 ntAPPRIS P1 TSL 1 (best) BASIC21.52■■□□□ 1.04
Col11a1Q61245 Fbxl3-204ENSMUST00000132004 2534 ntTSL 1 (best) BASIC21.52■■□□□ 1.03
Col11a1Q61245 Snapc3-201ENSMUST00000030206 1405 ntAPPRIS P1 TSL 1 (best) BASIC21.52■■□□□ 1.03
Col11a1Q61245 Dvl3-201ENSMUST00000003318 2498 ntAPPRIS P1 TSL 1 (best) BASIC21.51■■□□□ 1.03
Col11a1Q61245 Catsper2-201ENSMUST00000038073 2247 ntAPPRIS P1 TSL 1 (best) BASIC21.51■■□□□ 1.03
Col11a1Q61245 Ntmt1-201ENSMUST00000041830 1387 ntAPPRIS P1 TSL 1 (best) BASIC21.51■■□□□ 1.03
Col11a1Q61245 Adgrv1-211ENSMUST00000146749 1592 ntTSL 1 (best) BASIC21.51■■□□□ 1.03
Col11a1Q61245 Gm20100-201ENSMUST00000209418 2272 ntBASIC21.51■■□□□ 1.03
Col11a1Q61245 Ccnd3-ps-201ENSMUST00000117963 881 ntBASIC21.51■■□□□ 1.03
Col11a1Q61245 Gm28374-201ENSMUST00000162374 728 ntAPPRIS P1 TSL 3 BASIC21.51■■□□□ 1.03
Col11a1Q61245 Elof1-204ENSMUST00000214394 567 ntAPPRIS P1 TSL 2 BASIC21.51■■□□□ 1.03
Col11a1Q61245 Btg1-202ENSMUST00000218953 668 ntTSL 2 BASIC21.51■■□□□ 1.03
Col11a1Q61245 Eif3h-201ENSMUST00000022925 1295 ntAPPRIS P1 TSL 1 (best) BASIC21.51■■□□□ 1.03
Col11a1Q61245 Gtpbp6-201ENSMUST00000077220 1617 ntAPPRIS P1 TSL 1 (best) BASIC21.51■■□□□ 1.03
Col11a1Q61245 Espn-204ENSMUST00000080042 1402 ntTSL 1 (best) BASIC21.51■■□□□ 1.03
Col11a1Q61245 E030030I06Rik-202ENSMUST00000179054 2081 ntAPPRIS P4 TSL 1 (best) BASIC21.51■■□□□ 1.03
Col11a1Q61245 Jkamp-202ENSMUST00000117449 1874 ntAPPRIS ALT2 TSL 1 (best) BASIC21.51■■□□□ 1.03
Col11a1Q61245 Rsrc1-202ENSMUST00000065047 2736 ntAPPRIS ALT2 TSL 1 (best) BASIC21.51■■□□□ 1.03
Col11a1Q61245 Smim1-205ENSMUST00000131325 842 ntTSL 5 BASIC21.5■■□□□ 1.03
Col11a1Q61245 Nfu1-201ENSMUST00000032060 948 ntAPPRIS P3 TSL 1 (best) BASIC21.5■■□□□ 1.03
Col11a1Q61245 Foxa2-201ENSMUST00000047315 2128 ntAPPRIS P3 TSL 1 (best) BASIC21.5■■□□□ 1.03
Col11a1Q61245 Cpeb3-205ENSMUST00000126781 2095 ntTSL 1 (best) BASIC21.5■■□□□ 1.03
Col11a1Q61245 Gm17641-201ENSMUST00000166328 2350 ntBASIC21.5■■□□□ 1.03
Col11a1Q61245 Opa3-202ENSMUST00000161711 1390 ntAPPRIS ALT2 TSL 2 BASIC21.5■■□□□ 1.03
Col11a1Q61245 Znhit1-203ENSMUST00000111090 698 ntTSL 2 BASIC21.5■■□□□ 1.03
Col11a1Q61245 Gm12356-201ENSMUST00000122854 353 ntTSL 1 (best) BASIC21.5■■□□□ 1.03
Col11a1Q61245 Zfpl1-201ENSMUST00000025707 1287 ntAPPRIS P1 TSL 1 (best) BASIC21.5■■□□□ 1.03
Col11a1Q61245 Ankrd33b-203ENSMUST00000110410 2070 ntAPPRIS P3 TSL 1 (best) BASIC21.49■■□□□ 1.03
Col11a1Q61245 Kcnk15-202ENSMUST00000109396 1921 ntAPPRIS ALT2 TSL 1 (best) BASIC21.49■■□□□ 1.03
Col11a1Q61245 Them6-201ENSMUST00000070923 1784 ntAPPRIS P1 TSL 1 (best) BASIC21.49■■□□□ 1.03
Col11a1Q61245 Ngb-201ENSMUST00000021420 1616 ntAPPRIS P3 TSL 1 (best) BASIC21.49■■□□□ 1.03
Col11a1Q61245 9130221H12Rik-201ENSMUST00000169914 1465 ntTSL 1 (best) BASIC21.49■■□□□ 1.03
Col11a1Q61245 Hat1-202ENSMUST00000112122 1899 ntAPPRIS ALT2 TSL 5 BASIC21.49■■□□□ 1.03
Col11a1Q61245 Aqp2-201ENSMUST00000023752 1416 ntAPPRIS P1 TSL 1 (best) BASIC21.49■■□□□ 1.03
Col11a1Q61245 Klhl22-201ENSMUST00000117192 2754 ntTSL 5 BASIC21.49■■□□□ 1.03
Col11a1Q61245 Kcnq5-206ENSMUST00000173404 2775 ntAPPRIS ALT2 TSL 5 BASIC21.49■■□□□ 1.03
Col11a1Q61245 Prdm13-201ENSMUST00000076206 2993 ntAPPRIS ALT2 TSL 2 BASIC21.49■■□□□ 1.03
Col11a1Q61245 Nhlh1-201ENSMUST00000059794 2464 ntAPPRIS P1 TSL 1 (best) BASIC21.48■■□□□ 1.03
Col11a1Q61245 A230052G05Rik-201ENSMUST00000050921 2302 ntBASIC21.48■■□□□ 1.03
Col11a1Q61245 Lgmn-202ENSMUST00000110020 1835 ntAPPRIS P1 TSL 1 (best) BASIC21.48■■□□□ 1.03
Col11a1Q61245 Gm16432-201ENSMUST00000094273 1663 ntAPPRIS P1 TSL 1 (best) BASIC21.48■■□□□ 1.03
Col11a1Q61245 AW121686-201ENSMUST00000181049 2200 ntTSL 1 (best) BASIC21.48■■□□□ 1.03
Col11a1Q61245 Gm37939-201ENSMUST00000192309 447 ntTSL 5 BASIC21.48■■□□□ 1.03
Col11a1Q61245 Ewsr1-204ENSMUST00000093365 1290 ntTSL 5 BASIC21.48■■□□□ 1.03
Col11a1Q61245 Spry1-201ENSMUST00000038569 2481 ntAPPRIS P1 TSL 1 (best) BASIC21.48■■□□□ 1.03
Col11a1Q61245 Grina-201ENSMUST00000023225 1693 ntAPPRIS P1 TSL 1 (best) BASIC21.47■■□□□ 1.03
Col11a1Q61245 St3gal4-201ENSMUST00000034537 2095 ntAPPRIS P1 TSL 1 (best) BASIC21.47■■□□□ 1.03
Col11a1Q61245 Cd37-209ENSMUST00000211373 1428 ntAPPRIS ALT2 TSL 1 (best) BASIC21.47■■□□□ 1.03
Col11a1Q61245 Alg9-201ENSMUST00000034561 2873 ntAPPRIS P1 TSL 1 (best) BASIC21.47■■□□□ 1.03
Col11a1Q61245 0610010K14Rik-207ENSMUST00000108577 659 ntTSL 5 BASIC21.47■■□□□ 1.03
Col11a1Q61245 Slc17a7-201ENSMUST00000085374 2915 ntAPPRIS P1 TSL 1 (best) BASIC21.47■■□□□ 1.03
Col11a1Q61245 Cbln2-201ENSMUST00000068423 2475 ntAPPRIS P1 TSL 1 (best) BASIC21.46■■□□□ 1.03
Col11a1Q61245 Arhgef4-208ENSMUST00000211073 171 ntBASIC21.46■■□□□ 1.03
Col11a1Q61245 Ltbr-201ENSMUST00000032489 2107 ntAPPRIS P1 TSL 1 (best) BASIC21.46■■□□□ 1.03
Col11a1Q61245 Pdcd2-201ENSMUST00000054450 1120 ntAPPRIS P1 TSL 1 (best) BASIC21.46■■□□□ 1.03
Col11a1Q61245 Syt17-203ENSMUST00000203485 1932 ntTSL 1 (best) BASIC21.46■■□□□ 1.03
Col11a1Q61245 Krt24-201ENSMUST00000017255 1847 ntAPPRIS P1 TSL 1 (best) BASIC21.46■■□□□ 1.03
Col11a1Q61245 Rchy1-201ENSMUST00000031345 1967 ntAPPRIS P1 TSL 1 (best) BASIC21.46■■□□□ 1.03
Col11a1Q61245 Sdf4-204ENSMUST00000105579 1670 ntAPPRIS P1 TSL 1 (best) BASIC21.46■■□□□ 1.03
Col11a1Q61245 Phf12-202ENSMUST00000108360 3047 ntTSL 1 (best) BASIC21.46■■□□□ 1.03
Col11a1Q61245 Tbxa2r-202ENSMUST00000220312 1919 ntAPPRIS P1 TSL 1 (best) BASIC21.46■■□□□ 1.03
Col11a1Q61245 Marc2-201ENSMUST00000068725 1917 ntAPPRIS P1 TSL 1 (best) BASIC21.46■■□□□ 1.03
Col11a1Q61245 Carm1-201ENSMUST00000034703 3220 ntAPPRIS P3 TSL 1 (best) BASIC21.46■■□□□ 1.03
Col11a1Q61245 Gm5577-203ENSMUST00000153372 815 ntTSL 1 (best) BASIC21.45■■□□□ 1.03
Col11a1Q61245 Gm26643-201ENSMUST00000180854 1274 ntTSL 1 (best) BASIC21.45■■□□□ 1.03
Col11a1Q61245 Gm7367-201ENSMUST00000057611 492 ntBASIC21.45■■□□□ 1.03
Col11a1Q61245 Ubac1-201ENSMUST00000036509 1852 ntAPPRIS P2 TSL 1 (best) BASIC21.45■■□□□ 1.03
Col11a1Q61245 Kremen2-201ENSMUST00000046525 2123 ntAPPRIS P1 TSL 1 (best) BASIC21.45■■□□□ 1.02
Col11a1Q61245 D11Wsu47e-201ENSMUST00000042227 2196 ntAPPRIS P1 TSL 1 (best) BASIC21.45■■□□□ 1.02
Col11a1Q61245 Mrpl15-205ENSMUST00000146665 1569 ntTSL 1 (best) BASIC21.45■■□□□ 1.02
Col11a1Q61245 Lsr-203ENSMUST00000108116 2071 ntAPPRIS ALT2 TSL 1 (best) BASIC21.45■■□□□ 1.02
Col11a1Q61245 Ets1-202ENSMUST00000050797 1976 ntTSL 1 (best) BASIC21.45■■□□□ 1.02
Col11a1Q61245 Ctdsp1-201ENSMUST00000027367 2876 ntAPPRIS P1 TSL 1 (best) BASIC21.45■■□□□ 1.02
Col11a1Q61245 Rbm7-201ENSMUST00000170000 1773 ntAPPRIS P1 TSL 1 (best) BASIC21.45■■□□□ 1.02
Col11a1Q61245 Nbl1-201ENSMUST00000042844 1793 ntAPPRIS P1 TSL 1 (best) BASIC21.45■■□□□ 1.02
Col11a1Q61245 Gm21814-202ENSMUST00000203277 873 ntBASIC21.45■■□□□ 1.02
Col11a1Q61245 Gabarapl1-202ENSMUST00000204487 902 ntTSL 1 (best) BASIC21.45■■□□□ 1.02
Col11a1Q61245 Dstn-201ENSMUST00000103172 1911 ntAPPRIS P1 TSL 1 (best) BASIC21.45■■□□□ 1.02
Col11a1Q61245 Bspry-202ENSMUST00000107449 2167 ntAPPRIS ALT2 TSL 1 (best) BASIC21.44■■□□□ 1.02
Col11a1Q61245 Arl4aos-201ENSMUST00000135883 748 ntTSL 1 (best) BASIC21.44■■□□□ 1.02
Col11a1Q61245 Gm7889-201ENSMUST00000185591 958 ntBASIC21.44■■□□□ 1.02
Col11a1Q61245 Pthlh-202ENSMUST00000204197 1281 ntAPPRIS P1 TSL 5 BASIC21.44■■□□□ 1.02
Col11a1Q61245 Pbx1-202ENSMUST00000072863 1709 ntTSL 1 (best) BASIC21.44■■□□□ 1.02
Col11a1Q61245 Slc35d3-201ENSMUST00000059805 2630 ntAPPRIS P1 TSL 1 (best) BASIC21.44■■□□□ 1.02
Col11a1Q61245 Agpat3-202ENSMUST00000105387 1316 ntAPPRIS P1 TSL 1 (best) BASIC21.44■■□□□ 1.02
Col11a1Q61245 Kcnn2-203ENSMUST00000169783 1625 ntTSL 1 (best) BASIC21.44■■□□□ 1.02
Col11a1Q61245 Pllp-201ENSMUST00000034227 1926 ntAPPRIS P1 TSL 1 (best) BASIC21.44■■□□□ 1.02
Col11a1Q61245 Hpca-202ENSMUST00000095807 1666 ntAPPRIS P1 TSL 1 (best) BASIC21.44■■□□□ 1.02
Col11a1Q61245 Pus1-201ENSMUST00000031481 1563 ntAPPRIS ALT2 TSL 1 (best) BASIC21.43■■□□□ 1.02
Col11a1Q61245 Trappc6a-201ENSMUST00000002112 785 ntAPPRIS P1 TSL 1 (best) BASIC21.43■■□□□ 1.02
Col11a1Q61245 Calml4-206ENSMUST00000215870 803 ntTSL 1 (best) BASIC21.43■■□□□ 1.02
Col11a1Q61245 Lat-201ENSMUST00000032997 1235 ntAPPRIS P2 TSL 1 (best) BASIC21.43■■□□□ 1.02
Col11a1Q61245 Atp5l-201ENSMUST00000043675 544 ntAPPRIS P1 TSL 1 (best) BASIC21.43■■□□□ 1.02
Col11a1Q61245 Gm9803-201ENSMUST00000057649 563 ntAPPRIS P1 BASIC21.43■■□□□ 1.02
Col11a1Q61245 2200002D01Rik-201ENSMUST00000032808 1466 ntAPPRIS P1 TSL 1 (best) BASIC21.43■■□□□ 1.02
Col11a1Q61245 Acsl3-203ENSMUST00000134566 2492 ntTSL 1 (best) BASIC21.43■■□□□ 1.02
Col11a1Q61245 Zmynd10-201ENSMUST00000010188 1765 ntAPPRIS P1 TSL 1 (best) BASIC21.43■■□□□ 1.02
Col11a1Q61245 Ankdd1a-201ENSMUST00000061766 1443 ntAPPRIS ALT2 TSL 5 BASIC21.43■■□□□ 1.02
Col11a1Q61245 Aplp1-201ENSMUST00000006828 2343 ntAPPRIS P1 TSL 1 (best) BASIC21.43■■□□□ 1.02
Retrieved 100 of 76,532 protein–RNA pairs in 20.3 ms