Protein–RNA interactions for Protein: Q61124

Cln3, Battenin, mousemouse

Predictions only

Length 438 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Cln3Q61124 Olfr718-ps1-204ENSMUST00000218872 963 ntAPPRIS ALT2 BASIC20.85■□□□□ 0.93
Cln3Q61124 C1galt1-201ENSMUST00000040159 6092 ntAPPRIS P1 TSL 1 (best) BASIC20.85■□□□□ 0.93
Cln3Q61124 Zfp821-206ENSMUST00000212964 2033 ntTSL 1 (best) BASIC20.85■□□□□ 0.93
Cln3Q61124 Uba5-201ENSMUST00000035166 2404 ntAPPRIS P1 TSL 1 (best) BASIC20.85■□□□□ 0.93
Cln3Q61124 Kctd9-201ENSMUST00000078053 3157 ntTSL 1 (best) BASIC20.85■□□□□ 0.93
Cln3Q61124 Dstn-201ENSMUST00000103172 1911 ntAPPRIS P1 TSL 1 (best) BASIC20.84■□□□□ 0.93
Cln3Q61124 Ssx2ip-203ENSMUST00000106151 3232 ntAPPRIS ALT2 TSL 1 (best) BASIC20.84■□□□□ 0.93
Cln3Q61124 Gm21596-201ENSMUST00000178049 1316 ntBASIC20.84■□□□□ 0.93
Cln3Q61124 Agtpbp1-222ENSMUST00000171606 3037 ntTSL 1 (best) BASIC20.84■□□□□ 0.93
Cln3Q61124 Ccng2-201ENSMUST00000031331 2810 ntAPPRIS P1 TSL 1 (best) BASIC20.84■□□□□ 0.93
Cln3Q61124 Gm13647-201ENSMUST00000154654 622 ntTSL 5 BASIC20.84■□□□□ 0.93
Cln3Q61124 Stard6-203ENSMUST00000168249 1167 ntAPPRIS P1 TSL 1 (best) BASIC20.84■□□□□ 0.93
Cln3Q61124 AL672049.1-201ENSMUST00000197943 91 ntBASIC20.84■□□□□ 0.93
Cln3Q61124 AC061963.1-203ENSMUST00000213473 453 ntTSL 3 BASIC20.84■□□□□ 0.93
Cln3Q61124 Arhgef33-211ENSMUST00000225658 473 ntBASIC20.84■□□□□ 0.93
Cln3Q61124 Crybb1-201ENSMUST00000031286 882 ntAPPRIS P1 TSL 1 (best) BASIC20.84■□□□□ 0.93
Cln3Q61124 Prrg2-201ENSMUST00000007981 1295 ntAPPRIS P2 TSL 1 (best) BASIC20.84■□□□□ 0.93
Cln3Q61124 Gm5475-201ENSMUST00000132119 2608 ntAPPRIS P5 TSL 1 (best) BASIC20.84■□□□□ 0.93
Cln3Q61124 Lrg1-201ENSMUST00000041357 1351 ntAPPRIS P1 TSL 1 (best) BASIC20.84■□□□□ 0.93
Cln3Q61124 Sdf4-204ENSMUST00000105579 1670 ntAPPRIS P1 TSL 1 (best) BASIC20.83■□□□□ 0.93
Cln3Q61124 Hmga1-202ENSMUST00000117254 1328 ntAPPRIS P3 TSL 2 BASIC20.83■□□□□ 0.93
Cln3Q61124 Cadps-201ENSMUST00000067491 5421 ntAPPRIS P4 TSL 1 (best) BASIC20.83■□□□□ 0.93
Cln3Q61124 Gm26708-203ENSMUST00000208236 1624 ntTSL 5 BASIC20.83■□□□□ 0.93
Cln3Q61124 Retreg2-201ENSMUST00000097694 2561 ntAPPRIS P3 TSL 1 (best) BASIC20.83■□□□□ 0.93
Cln3Q61124 Ccdc107-202ENSMUST00000107922 865 ntAPPRIS ALT2 TSL 2 BASIC20.83■□□□□ 0.93
Cln3Q61124 1110065P20Rik-203ENSMUST00000137769 659 ntTSL 1 (best) BASIC20.83■□□□□ 0.93
Cln3Q61124 Josd2-218ENSMUST00000206887 693 ntTSL 5 BASIC20.83■□□□□ 0.93
Cln3Q61124 6530437J22Rik-201ENSMUST00000207515 773 ntTSL 1 (best) BASIC20.83■□□□□ 0.93
Cln3Q61124 Grp-201ENSMUST00000025395 862 ntAPPRIS P2 TSL 1 (best) BASIC20.83■□□□□ 0.93
Cln3Q61124 Ccdc107-201ENSMUST00000030181 817 ntAPPRIS P2 TSL 1 (best) BASIC20.83■□□□□ 0.93
Cln3Q61124 Crlf2-203ENSMUST00000200284 1405 ntAPPRIS ALT2 TSL 1 (best) BASIC20.83■□□□□ 0.93
Cln3Q61124 Pigt-202ENSMUST00000117066 1712 ntAPPRIS ALT2 TSL 1 (best) BASIC20.83■□□□□ 0.92
Cln3Q61124 Riox1-201ENSMUST00000053744 2344 ntAPPRIS P1 BASIC20.83■□□□□ 0.92
Cln3Q61124 Slc35d2-201ENSMUST00000099441 2303 ntAPPRIS P2 TSL 1 (best) BASIC20.83■□□□□ 0.92
Cln3Q61124 Ubtf-201ENSMUST00000006754 3213 ntAPPRIS ALT2 TSL 1 (best) BASIC20.83■□□□□ 0.92
Cln3Q61124 Fbxo44-201ENSMUST00000057907 1829 ntAPPRIS P1 TSL 1 (best) BASIC20.83■□□□□ 0.92
Cln3Q61124 Rab5c-201ENSMUST00000019317 1967 ntTSL 1 (best) BASIC20.83■□□□□ 0.92
Cln3Q61124 1110032F04Rik-201ENSMUST00000054551 2578 ntAPPRIS P1 BASIC20.83■□□□□ 0.92
Cln3Q61124 Set-201ENSMUST00000067996 2834 ntAPPRIS ALT2 TSL 1 (best) BASIC20.82■□□□□ 0.92
Cln3Q61124 Acp4-203ENSMUST00000118216 1454 ntAPPRIS P1 TSL 5 BASIC20.82■□□□□ 0.92
Cln3Q61124 Gm37352-201ENSMUST00000193908 2181 ntBASIC20.82■□□□□ 0.92
Cln3Q61124 C230037L18Rik-201ENSMUST00000136218 1886 ntTSL 1 (best) BASIC20.82■□□□□ 0.92
Cln3Q61124 Gm45472-201ENSMUST00000211295 1426 ntTSL 5 BASIC20.82■□□□□ 0.92
Cln3Q61124 Sdr39u1-201ENSMUST00000111325 1255 ntAPPRIS P1 TSL 1 (best) BASIC20.82■□□□□ 0.92
Cln3Q61124 Speg-203ENSMUST00000113588 1078 ntTSL 5 BASIC20.82■□□□□ 0.92
Cln3Q61124 Pigp-203ENSMUST00000113910 966 ntTSL 1 (best) BASIC20.82■□□□□ 0.92
Cln3Q61124 Gm6576-201ENSMUST00000169678 883 ntBASIC20.82■□□□□ 0.92
Cln3Q61124 Rsu1-209ENSMUST00000191959 720 ntTSL 3 BASIC20.82■□□□□ 0.92
Cln3Q61124 Tpgs1-201ENSMUST00000020552 1143 ntAPPRIS P1 TSL 1 (best) BASIC20.82■□□□□ 0.92
Cln3Q61124 Slc12a8-204ENSMUST00000121925 2656 ntAPPRIS P2 TSL 5 BASIC20.82■□□□□ 0.92
Cln3Q61124 Etv4-202ENSMUST00000107176 2377 ntTSL 1 (best) BASIC20.82■□□□□ 0.92
Cln3Q61124 Lrrc36-204ENSMUST00000213547 2396 ntAPPRIS ALT2 TSL 5 BASIC20.82■□□□□ 0.92
Cln3Q61124 Kcnq2-203ENSMUST00000081528 2382 ntTSL 1 (best) BASIC20.82■□□□□ 0.92
Cln3Q61124 Syt5-201ENSMUST00000065957 1750 ntAPPRIS P1 TSL 1 (best) BASIC20.82■□□□□ 0.92
Cln3Q61124 Esx1-201ENSMUST00000074698 1600 ntAPPRIS P2 TSL 1 (best) BASIC20.82■□□□□ 0.92
Cln3Q61124 Fkbp9-201ENSMUST00000031795 3009 ntAPPRIS P1 TSL 1 (best) BASIC20.81■□□□□ 0.92
Cln3Q61124 Clasp2-211ENSMUST00000216817 2234 ntTSL 1 (best) BASIC20.81■□□□□ 0.92
Cln3Q61124 D1Ertd622e-203ENSMUST00000149927 2703 ntAPPRIS P1 TSL 1 (best) BASIC20.81■□□□□ 0.92
Cln3Q61124 Nrn1-203ENSMUST00000223611 1443 ntBASIC20.81■□□□□ 0.92
Cln3Q61124 E4f1-201ENSMUST00000056032 2574 ntAPPRIS P2 TSL 1 (best) BASIC20.81■□□□□ 0.92
Cln3Q61124 Gse1-203ENSMUST00000120493 4610 ntAPPRIS ALT2 TSL 1 (best) BASIC20.81■□□□□ 0.92
Cln3Q61124 Unc50-203ENSMUST00000118059 1179 ntAPPRIS P1 TSL 5 BASIC20.81■□□□□ 0.92
Cln3Q61124 Dohh-206ENSMUST00000131968 672 ntAPPRIS P1 TSL 3 BASIC20.81■□□□□ 0.92
Cln3Q61124 Ccnd2-202ENSMUST00000201066 983 ntTSL 2 BASIC20.81■□□□□ 0.92
Cln3Q61124 AC135963.1-201ENSMUST00000211640 717 ntBASIC20.81■□□□□ 0.92
Cln3Q61124 Fgf8-202ENSMUST00000026241 1168 ntTSL 1 (best) BASIC20.81■□□□□ 0.92
Cln3Q61124 Nrn1l-201ENSMUST00000060167 617 ntAPPRIS P3 TSL 1 (best) BASIC20.81■□□□□ 0.92
Cln3Q61124 Gm8909-202ENSMUST00000097335 1182 ntAPPRIS ALT2 TSL 5 BASIC20.81■□□□□ 0.92
Cln3Q61124 Gfer-201ENSMUST00000046839 1775 ntAPPRIS P1 TSL 1 (best) BASIC20.81■□□□□ 0.92
Cln3Q61124 Csrp2-201ENSMUST00000020403 1384 ntAPPRIS P1 TSL 1 (best) BASIC20.81■□□□□ 0.92
Cln3Q61124 Ccdc124-201ENSMUST00000007865 1356 ntAPPRIS P1 TSL 1 (best) BASIC20.81■□□□□ 0.92
Cln3Q61124 Barx2-201ENSMUST00000116615 1968 ntAPPRIS P1 TSL 1 (best) BASIC20.81■□□□□ 0.92
Cln3Q61124 Best2-201ENSMUST00000059072 1971 ntAPPRIS P1 TSL 1 (best) BASIC20.81■□□□□ 0.92
Cln3Q61124 Gnas-208ENSMUST00000109087 1716 ntAPPRIS P4 TSL 1 (best) BASIC20.81■□□□□ 0.92
Cln3Q61124 Fblim1-202ENSMUST00000105784 3036 ntAPPRIS P1 TSL 5 BASIC20.8■□□□□ 0.92
Cln3Q61124 Rad1-201ENSMUST00000022856 1514 ntAPPRIS P1 TSL 1 (best) BASIC20.8■□□□□ 0.92
Cln3Q61124 Tcf7l1-202ENSMUST00000114053 1888 ntAPPRIS ALT2 TSL 1 (best) BASIC20.8■□□□□ 0.92
Cln3Q61124 Idh3a-205ENSMUST00000217484 2580 ntTSL 1 (best) BASIC20.8■□□□□ 0.92
Cln3Q61124 Gm22325-201ENSMUST00000158904 308 ntBASIC20.8■□□□□ 0.92
Cln3Q61124 Creb1-203ENSMUST00000171164 1287 ntTSL 1 (best) BASIC20.8■□□□□ 0.92
Cln3Q61124 Gm44899-201ENSMUST00000207451 391 ntTSL 3 BASIC20.8■□□□□ 0.92
Cln3Q61124 Znrf4-201ENSMUST00000052211 1236 ntAPPRIS P1 BASIC20.8■□□□□ 0.92
Cln3Q61124 Npr3-205ENSMUST00000228603 2437 ntAPPRIS ALT2 BASIC20.8■□□□□ 0.92
Cln3Q61124 Tsc22d1-214ENSMUST00000177207 1476 ntTSL 3 BASIC20.8■□□□□ 0.92
Cln3Q61124 Phospho1-201ENSMUST00000054173 1910 ntAPPRIS P1 TSL 2 BASIC20.8■□□□□ 0.92
Cln3Q61124 Gm16432-201ENSMUST00000094273 1663 ntAPPRIS P1 TSL 1 (best) BASIC20.8■□□□□ 0.92
Cln3Q61124 Gm26674-201ENSMUST00000180770 1446 ntTSL 1 (best) BASIC20.79■□□□□ 0.92
Cln3Q61124 Cltb-202ENSMUST00000091609 2186 ntAPPRIS P3 TSL 1 (best) BASIC20.79■□□□□ 0.92
Cln3Q61124 Grin2d-201ENSMUST00000002848 5431 ntAPPRIS P1 TSL 1 (best) BASIC20.79■□□□□ 0.92
Cln3Q61124 Vgf-202ENSMUST00000186451 2277 ntAPPRIS P1 TSL 5 BASIC20.79■□□□□ 0.92
Cln3Q61124 Gm715-201ENSMUST00000117865 831 ntBASIC20.79■□□□□ 0.92
Cln3Q61124 Cxxc4-201ENSMUST00000166288 1290 ntAPPRIS ALT2 TSL 5 BASIC20.79■□□□□ 0.92
Cln3Q61124 9130019P16Rik-203ENSMUST00000185712 650 ntTSL 5 BASIC20.79■□□□□ 0.92
Cln3Q61124 D930007J09Rik-201ENSMUST00000057911 393 ntAPPRIS P1 BASIC20.79■□□□□ 0.92
Cln3Q61124 Nsfl1c-203ENSMUST00000103160 1369 ntTSL 5 BASIC20.79■□□□□ 0.92
Cln3Q61124 Srxn1-201ENSMUST00000041500 2812 ntAPPRIS P1 TSL 1 (best) BASIC20.79■□□□□ 0.92
Cln3Q61124 Gpr137-202ENSMUST00000099774 1434 ntTSL 1 (best) BASIC20.78■□□□□ 0.92
Cln3Q61124 Kndc1-202ENSMUST00000121839 2210 ntTSL 2 BASIC20.78■□□□□ 0.92
Cln3Q61124 Etv4-212ENSMUST00000164750 2336 ntAPPRIS P3 TSL 1 (best) BASIC20.78■□□□□ 0.92
Cln3Q61124 1810026B05Rik-203ENSMUST00000184587 5738 ntTSL 1 (best) BASIC20.78■□□□□ 0.92
Retrieved 100 of 76,532 protein–RNA pairs in 16.5 ms