Protein–RNA interactions for Protein: Q60641

Nr1h4, Bile acid receptor, mousemouse

Predictions only

Length 488 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Nr1h4Q60641 Neil2-201ENSMUST00000038229 1932 ntAPPRIS P1 TSL 1 (best) BASIC17.98■□□□□ 0.47
Nr1h4Q60641 Pno1-201ENSMUST00000020317 1544 ntAPPRIS P1 TSL 1 (best) BASIC17.98■□□□□ 0.47
Nr1h4Q60641 Tob1-201ENSMUST00000041589 2288 ntAPPRIS P1 TSL 1 (best) BASIC17.97■□□□□ 0.47
Nr1h4Q60641 Btbd2-201ENSMUST00000003434 3026 ntAPPRIS P2 TSL 5 BASIC17.97■□□□□ 0.47
Nr1h4Q60641 Wdr37-203ENSMUST00000164183 1780 ntTSL 1 (best) BASIC17.97■□□□□ 0.47
Nr1h4Q60641 Large1-202ENSMUST00000119826 4647 ntAPPRIS P1 TSL 5 BASIC17.97■□□□□ 0.47
Nr1h4Q60641 Anapc5-203ENSMUST00000196640 2422 ntAPPRIS ALT2 TSL 1 (best) BASIC17.97■□□□□ 0.47
Nr1h4Q60641 Ppfia1-201ENSMUST00000168134 5181 ntAPPRIS P3 TSL 1 (best) BASIC17.97■□□□□ 0.47
Nr1h4Q60641 Slc30a2-203ENSMUST00000105873 1224 ntTSL 5 BASIC17.97■□□□□ 0.47
Nr1h4Q60641 Kcnma1-215ENSMUST00000190339 890 ntTSL 5 BASIC17.97■□□□□ 0.47
Nr1h4Q60641 Serbp1-212ENSMUST00000204294 717 ntTSL 5 BASIC17.97■□□□□ 0.47
Nr1h4Q60641 Hoxa10-202ENSMUST00000125581 2565 ntTSL 1 (best) BASIC17.97■□□□□ 0.47
Nr1h4Q60641 Matk-204ENSMUST00000120265 1618 ntAPPRIS ALT2 TSL 5 BASIC17.97■□□□□ 0.47
Nr1h4Q60641 Iars2-203ENSMUST00000110975 2801 ntTSL 5 BASIC17.97■□□□□ 0.47
Nr1h4Q60641 Camk2d-228ENSMUST00000200171 5396 ntTSL 5 BASIC17.97■□□□□ 0.47
Nr1h4Q60641 Grb14-201ENSMUST00000028252 1986 ntAPPRIS P1 TSL 1 (best) BASIC17.97■□□□□ 0.47
Nr1h4Q60641 Mid2-202ENSMUST00000112990 6271 ntAPPRIS P1 TSL 5 BASIC17.97■□□□□ 0.47
Nr1h4Q60641 Unc119-201ENSMUST00000002127 1329 ntAPPRIS P1 TSL 1 (best) BASIC17.97■□□□□ 0.47
Nr1h4Q60641 Ssfa2-203ENSMUST00000111788 4976 ntAPPRIS ALT2 TSL 5 BASIC17.97■□□□□ 0.47
Nr1h4Q60641 Rncr4-201ENSMUST00000194541 2234 ntBASIC17.96■□□□□ 0.47
Nr1h4Q60641 Rab3ip-201ENSMUST00000020375 2690 ntTSL 1 (best) BASIC17.96■□□□□ 0.47
Nr1h4Q60641 Erlin1-202ENSMUST00000112028 3136 ntAPPRIS P1 TSL 1 (best) BASIC17.96■□□□□ 0.47
Nr1h4Q60641 Rnf44-208ENSMUST00000128257 1689 ntTSL 5 BASIC17.96■□□□□ 0.47
Nr1h4Q60641 Ptpre-207ENSMUST00000211140 5753 ntAPPRIS P3 TSL 1 (best) BASIC17.96■□□□□ 0.47
Nr1h4Q60641 Galnt14-202ENSMUST00000112591 1843 ntTSL 1 (best) BASIC17.96■□□□□ 0.47
Nr1h4Q60641 E030030I06Rik-202ENSMUST00000179054 2081 ntAPPRIS P4 TSL 1 (best) BASIC17.96■□□□□ 0.47
Nr1h4Q60641 Itpkb-201ENSMUST00000070181 6235 ntAPPRIS P1 TSL 1 (best) BASIC17.96■□□□□ 0.47
Nr1h4Q60641 Zfp963-202ENSMUST00000154063 640 ntTSL 3 BASIC17.96■□□□□ 0.47
Nr1h4Q60641 AC164424.2-201ENSMUST00000223281 725 ntTSL 3 BASIC17.96■□□□□ 0.47
Nr1h4Q60641 Gm10209-201ENSMUST00000203397 1607 ntBASIC17.96■□□□□ 0.47
Nr1h4Q60641 Gm9828-202ENSMUST00000126622 1446 ntTSL 3 BASIC17.96■□□□□ 0.47
Nr1h4Q60641 Srcin1-203ENSMUST00000107596 7054 ntAPPRIS P2 TSL 1 (best) BASIC17.96■□□□□ 0.47
Nr1h4Q60641 Enah-203ENSMUST00000111025 3385 ntAPPRIS ALT2 TSL 5 BASIC17.96■□□□□ 0.46
Nr1h4Q60641 Gm42900-201ENSMUST00000197184 2167 ntBASIC17.96■□□□□ 0.46
Nr1h4Q60641 Lrrc36-202ENSMUST00000109355 2411 ntAPPRIS P2 TSL 5 BASIC17.96■□□□□ 0.46
Nr1h4Q60641 Plekhm2-202ENSMUST00000084203 4136 ntAPPRIS P3 TSL 5 BASIC17.96■□□□□ 0.46
Nr1h4Q60641 Nptxr-201ENSMUST00000023057 5004 ntAPPRIS ALT2 TSL 1 (best) BASIC17.95■□□□□ 0.46
Nr1h4Q60641 Cacng4-201ENSMUST00000021066 3500 ntAPPRIS P1 TSL 1 (best) BASIC17.95■□□□□ 0.46
Nr1h4Q60641 Nbn-201ENSMUST00000029879 2533 ntAPPRIS P1 TSL 1 (best) BASIC17.95■□□□□ 0.46
Nr1h4Q60641 Ctdsp2-202ENSMUST00000105256 4817 ntAPPRIS P1 TSL 1 (best) BASIC17.95■□□□□ 0.46
Nr1h4Q60641 Mt2-201ENSMUST00000034214 511 ntAPPRIS P1 TSL 1 (best) BASIC17.95■□□□□ 0.46
Nr1h4Q60641 Kmt5b-201ENSMUST00000005518 1283 ntAPPRIS ALT2 TSL 5 BASIC17.95■□□□□ 0.46
Nr1h4Q60641 Rps2-ps6-201ENSMUST00000095471 855 ntBASIC17.95■□□□□ 0.46
Nr1h4Q60641 Snx4-201ENSMUST00000023502 2442 ntAPPRIS P1 TSL 1 (best) BASIC17.95■□□□□ 0.46
Nr1h4Q60641 Nuak1-201ENSMUST00000020220 5558 ntAPPRIS P1 TSL 1 (best) BASIC17.95■□□□□ 0.46
Nr1h4Q60641 Letm1-201ENSMUST00000005431 5272 ntAPPRIS P1 TSL 1 (best) BASIC17.95■□□□□ 0.46
Nr1h4Q60641 Nek9-201ENSMUST00000040992 5386 ntAPPRIS P1 TSL 1 (best) BASIC17.94■□□□□ 0.46
Nr1h4Q60641 Phf23-204ENSMUST00000133485 1607 ntTSL 5 BASIC17.94■□□□□ 0.46
Nr1h4Q60641 Ssc4d-203ENSMUST00000111152 2745 ntAPPRIS P1 TSL 5 BASIC17.94■□□□□ 0.46
Nr1h4Q60641 Sbf1-205ENSMUST00000144585 6165 ntAPPRIS ALT2 TSL 1 (best) BASIC17.94■□□□□ 0.46
Nr1h4Q60641 Fbxw2-206ENSMUST00000113080 1923 ntAPPRIS P1 TSL 1 (best) BASIC17.94■□□□□ 0.46
Nr1h4Q60641 Tpd52-205ENSMUST00000120143 6317 ntTSL 1 (best) BASIC17.94■□□□□ 0.46
Nr1h4Q60641 Gm11837-201ENSMUST00000136992 876 ntTSL 2 BASIC17.94■□□□□ 0.46
Nr1h4Q60641 AC093043.1-201ENSMUST00000226700 898 ntBASIC17.94■□□□□ 0.46
Nr1h4Q60641 Alad-201ENSMUST00000030090 1206 ntAPPRIS P1 TSL 1 (best) BASIC17.94■□□□□ 0.46
Nr1h4Q60641 Hnrnpab-203ENSMUST00000109103 1437 ntAPPRIS ALT2 TSL 1 (best) BASIC17.94■□□□□ 0.46
Nr1h4Q60641 Zfp579-206ENSMUST00000162731 2489 ntAPPRIS P1 BASIC17.94■□□□□ 0.46
Nr1h4Q60641 Stmn4-201ENSMUST00000074523 1303 ntAPPRIS P1 TSL 1 (best) BASIC17.94■□□□□ 0.46
Nr1h4Q60641 Kcns2-201ENSMUST00000072868 5456 ntAPPRIS P1 TSL 1 (best) BASIC17.94■□□□□ 0.46
Nr1h4Q60641 Fam118a-201ENSMUST00000023069 2543 ntAPPRIS P1 TSL 1 (best) BASIC17.94■□□□□ 0.46
Nr1h4Q60641 Apba1-201ENSMUST00000025830 6632 ntAPPRIS P1 TSL 1 (best) BASIC17.93■□□□□ 0.46
Nr1h4Q60641 Arx-201ENSMUST00000046565 2881 ntAPPRIS P1 TSL 1 (best) BASIC17.93■□□□□ 0.46
Nr1h4Q60641 Rpap3-201ENSMUST00000023104 2260 ntAPPRIS P1 TSL 1 (best) BASIC17.93■□□□□ 0.46
Nr1h4Q60641 Socs4-201ENSMUST00000065562 6877 ntAPPRIS P1 TSL 1 (best) BASIC17.93■□□□□ 0.46
Nr1h4Q60641 Dtymk-202ENSMUST00000112890 1055 ntTSL 1 (best) BASIC17.93■□□□□ 0.46
Nr1h4Q60641 4930519P11Rik-201ENSMUST00000181369 501 ntAPPRIS P1 BASIC17.93■□□□□ 0.46
Nr1h4Q60641 Nr2c2ap-201ENSMUST00000095273 1161 ntAPPRIS P2 TSL 1 (best) BASIC17.93■□□□□ 0.46
Nr1h4Q60641 Bcor-206ENSMUST00000124033 6785 ntAPPRIS ALT2 TSL 1 (best) BASIC17.93■□□□□ 0.46
Nr1h4Q60641 Gm26795-201ENSMUST00000180993 1952 ntTSL 1 (best) BASIC17.92■□□□□ 0.46
Nr1h4Q60641 Palm-202ENSMUST00000105379 2519 ntTSL 1 (best) BASIC17.92■□□□□ 0.46
Nr1h4Q60641 Spsb4-201ENSMUST00000055433 2720 ntAPPRIS P1 TSL 1 (best) BASIC17.92■□□□□ 0.46
Nr1h4Q60641 Socs2-202ENSMUST00000119917 948 ntAPPRIS P1 TSL 1 (best) BASIC17.92■□□□□ 0.46
Nr1h4Q60641 Sumf1-206ENSMUST00000172188 723 ntTSL 5 BASIC17.92■□□□□ 0.46
Nr1h4Q60641 Gm45102-201ENSMUST00000207427 857 ntBASIC17.92■□□□□ 0.46
Nr1h4Q60641 Golgb1-201ENSMUST00000023534 498 ntBASIC17.92■□□□□ 0.46
Nr1h4Q60641 Tmbim1-201ENSMUST00000016309 2378 ntAPPRIS P1 TSL 1 (best) BASIC17.92■□□□□ 0.46
Nr1h4Q60641 Zfp771-201ENSMUST00000052509 1484 ntAPPRIS P1 TSL 1 (best) BASIC17.92■□□□□ 0.46
Nr1h4Q60641 Gm9885-202ENSMUST00000186234 2209 ntBASIC17.92■□□□□ 0.46
Nr1h4Q60641 Soat2-201ENSMUST00000023806 2213 ntAPPRIS P1 TSL 1 (best) BASIC17.92■□□□□ 0.46
Nr1h4Q60641 Larp6-201ENSMUST00000038407 2440 ntAPPRIS P1 TSL 1 (best) BASIC17.92■□□□□ 0.46
Nr1h4Q60641 Mirt1-201ENSMUST00000180489 5292 ntTSL 1 (best) BASIC17.92■□□□□ 0.46
Nr1h4Q60641 Gm4737-201ENSMUST00000059524 2093 ntAPPRIS P1 BASIC17.92■□□□□ 0.46
Nr1h4Q60641 Lrrfip1-201ENSMUST00000068116 2050 ntAPPRIS ALT2 TSL 5 BASIC17.92■□□□□ 0.46
Nr1h4Q60641 Irx5-201ENSMUST00000034184 2450 ntAPPRIS P1 TSL 1 (best) BASIC17.92■□□□□ 0.46
Nr1h4Q60641 Prdm8-201ENSMUST00000112959 4553 ntAPPRIS P1 TSL 1 (best) BASIC17.92■□□□□ 0.46
Nr1h4Q60641 Zmynd10-201ENSMUST00000010188 1765 ntAPPRIS P1 TSL 1 (best) BASIC17.91■□□□□ 0.46
Nr1h4Q60641 Oxct2a-201ENSMUST00000102640 1760 ntAPPRIS P1 BASIC17.91■□□□□ 0.46
Nr1h4Q60641 Stac3-201ENSMUST00000035839 1790 ntAPPRIS P1 TSL 1 (best) BASIC17.91■□□□□ 0.46
Nr1h4Q60641 Shisa4-201ENSMUST00000041240 1763 ntAPPRIS P1 TSL 1 (best) BASIC17.91■□□□□ 0.46
Nr1h4Q60641 Phldb3-204ENSMUST00000206422 2564 ntAPPRIS P1 TSL 5 BASIC17.91■□□□□ 0.46
Nr1h4Q60641 Gatad2a-202ENSMUST00000116463 3363 ntAPPRIS ALT2 TSL 1 (best) BASIC17.91■□□□□ 0.46
Nr1h4Q60641 Rbm18-201ENSMUST00000028251 2617 ntAPPRIS P1 TSL 1 (best) BASIC17.91■□□□□ 0.46
Nr1h4Q60641 Fcmr-201ENSMUST00000038829 1600 ntAPPRIS P1 TSL 1 (best) BASIC17.91■□□□□ 0.46
Nr1h4Q60641 Rgl2-201ENSMUST00000047503 3252 ntAPPRIS P1 TSL 1 (best) BASIC17.91■□□□□ 0.46
Nr1h4Q60641 Plekhg3-207ENSMUST00000219063 4535 ntAPPRIS ALT2 TSL 5 BASIC17.91■□□□□ 0.46
Nr1h4Q60641 Gm10941-201ENSMUST00000105408 708 ntTSL 1 (best) BASIC17.91■□□□□ 0.46
Nr1h4Q60641 Naa20-202ENSMUST00000110000 1142 ntAPPRIS P1 TSL 1 (best) BASIC17.91■□□□□ 0.46
Nr1h4Q60641 Siglec15-201ENSMUST00000170760 1156 ntAPPRIS P1 TSL 1 (best) BASIC17.91■□□□□ 0.46
Nr1h4Q60641 Plppr3-201ENSMUST00000092325 2766 ntAPPRIS P3 TSL 1 (best) BASIC17.91■□□□□ 0.46
Nr1h4Q60641 Mchr1-201ENSMUST00000166855 2188 ntAPPRIS P1 TSL 1 (best) BASIC17.91■□□□□ 0.46
Retrieved 100 of 76,532 protein–RNA pairs in 22.4 ms