Protein–RNA interactions for Protein: Q5QNQ9

Col27a1, Collagen alpha-1(XXVII) chain, mousemouse

Predictions only

Length 1,845 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Col27a1Q5QNQ9 Zmynd10-201ENSMUST00000010188 1765 ntAPPRIS P1 TSL 1 (best) BASIC18.56■□□□□ 0.56
Col27a1Q5QNQ9 4930405A21Rik-202ENSMUST00000139042 994 ntTSL 1 (best) BASIC18.56■□□□□ 0.56
Col27a1Q5QNQ9 Samd13-205ENSMUST00000197989 591 ntTSL 5 BASIC18.56■□□□□ 0.56
Col27a1Q5QNQ9 Josd2-218ENSMUST00000206887 693 ntTSL 5 BASIC18.56■□□□□ 0.56
Col27a1Q5QNQ9 Fuz-206ENSMUST00000207485 1140 ntAPPRIS ALT1 TSL 5 BASIC18.56■□□□□ 0.56
Col27a1Q5QNQ9 Chmp2a-203ENSMUST00000210587 930 ntAPPRIS P1 TSL 3 BASIC18.56■□□□□ 0.56
Col27a1Q5QNQ9 Olfr718-ps1-204ENSMUST00000218872 963 ntAPPRIS ALT2 BASIC18.56■□□□□ 0.56
Col27a1Q5QNQ9 Cldn24-201ENSMUST00000079639 663 ntAPPRIS P1 BASIC18.56■□□□□ 0.56
Col27a1Q5QNQ9 Khdc3-201ENSMUST00000034737 1681 ntAPPRIS P3 TSL 1 (best) BASIC18.55■□□□□ 0.56
Col27a1Q5QNQ9 Lbx1-201ENSMUST00000099401 2484 ntAPPRIS P1 TSL 1 (best) BASIC18.55■□□□□ 0.56
Col27a1Q5QNQ9 Tcf4-246ENSMUST00000202116 2986 ntTSL 1 (best) BASIC18.55■□□□□ 0.56
Col27a1Q5QNQ9 Snx15-207ENSMUST00000154601 767 ntTSL 5 BASIC18.55■□□□□ 0.56
Col27a1Q5QNQ9 March9-201ENSMUST00000040307 3037 ntAPPRIS P1 TSL 1 (best) BASIC18.55■□□□□ 0.56
Col27a1Q5QNQ9 9130221H12Rik-201ENSMUST00000169914 1465 ntTSL 1 (best) BASIC18.55■□□□□ 0.56
Col27a1Q5QNQ9 Tmem230-206ENSMUST00000180286 1531 ntAPPRIS P1 TSL 2 BASIC18.55■□□□□ 0.56
Col27a1Q5QNQ9 Rrp9-201ENSMUST00000047721 1586 ntAPPRIS P1 TSL 1 (best) BASIC18.54■□□□□ 0.56
Col27a1Q5QNQ9 Zfp444-203ENSMUST00000108566 1648 ntAPPRIS P1 TSL 1 (best) BASIC18.54■□□□□ 0.56
Col27a1Q5QNQ9 Hpca-202ENSMUST00000095807 1666 ntAPPRIS P1 TSL 1 (best) BASIC18.54■□□□□ 0.56
Col27a1Q5QNQ9 Baiap2-205ENSMUST00000106233 2442 ntAPPRIS ALT2 TSL 5 BASIC18.54■□□□□ 0.56
Col27a1Q5QNQ9 Tekt5-202ENSMUST00000115831 1277 ntAPPRIS P3 TSL 1 (best) BASIC18.54■□□□□ 0.56
Col27a1Q5QNQ9 Wdr74-202ENSMUST00000210512 1078 ntTSL 1 (best) BASIC18.54■□□□□ 0.56
Col27a1Q5QNQ9 Zcchc13-201ENSMUST00000033692 1085 ntAPPRIS P1 BASIC18.54■□□□□ 0.56
Col27a1Q5QNQ9 Sqstm1-202ENSMUST00000102774 2037 ntAPPRIS P1 TSL 1 (best) BASIC18.54■□□□□ 0.56
Col27a1Q5QNQ9 Nanp-201ENSMUST00000066640 1394 ntAPPRIS P1 TSL 1 (best) BASIC18.54■□□□□ 0.56
Col27a1Q5QNQ9 Nipsnap2-201ENSMUST00000086046 2112 ntAPPRIS P1 TSL 1 (best) BASIC18.54■□□□□ 0.56
Col27a1Q5QNQ9 Stk32c-201ENSMUST00000016125 2206 ntAPPRIS P1 TSL 1 (best) BASIC18.54■□□□□ 0.56
Col27a1Q5QNQ9 Slc18a3-201ENSMUST00000191501 2413 ntAPPRIS P1 BASIC18.54■□□□□ 0.56
Col27a1Q5QNQ9 Ablim1-204ENSMUST00000111524 1251 ntTSL 1 (best) BASIC18.53■□□□□ 0.56
Col27a1Q5QNQ9 Gm15723-201ENSMUST00000139331 600 ntTSL 3 BASIC18.53■□□□□ 0.56
Col27a1Q5QNQ9 Spata25-201ENSMUST00000017911 786 ntAPPRIS P1 TSL 1 (best) BASIC18.53■□□□□ 0.56
Col27a1Q5QNQ9 Gm33142-201ENSMUST00000193913 867 ntBASIC18.53■□□□□ 0.56
Col27a1Q5QNQ9 Fam49b-202ENSMUST00000164532 1770 ntAPPRIS P1 TSL 1 (best) BASIC18.53■□□□□ 0.56
Col27a1Q5QNQ9 Srsf10-203ENSMUST00000102544 2225 ntTSL 1 (best) BASIC18.53■□□□□ 0.56
Col27a1Q5QNQ9 Tmem60-201ENSMUST00000115259 1147 ntAPPRIS P1 TSL 1 (best) BASIC18.53■□□□□ 0.56
Col27a1Q5QNQ9 Siglecf-202ENSMUST00000121494 1572 ntAPPRIS ALT2 TSL 1 (best) BASIC18.53■□□□□ 0.56
Col27a1Q5QNQ9 Rbm7-201ENSMUST00000170000 1773 ntAPPRIS P1 TSL 1 (best) BASIC18.53■□□□□ 0.56
Col27a1Q5QNQ9 Gm23634-201ENSMUST00000175071 91 ntBASIC18.53■□□□□ 0.56
Col27a1Q5QNQ9 Timm23-208ENSMUST00000226683 750 ntBASIC18.53■□□□□ 0.56
Col27a1Q5QNQ9 Ntmt1-201ENSMUST00000041830 1387 ntAPPRIS P1 TSL 1 (best) BASIC18.53■□□□□ 0.56
Col27a1Q5QNQ9 Tpra1-201ENSMUST00000055022 1820 ntAPPRIS P1 TSL 1 (best) BASIC18.53■□□□□ 0.56
Col27a1Q5QNQ9 Gm10273-201ENSMUST00000092511 1126 ntAPPRIS P1 BASIC18.53■□□□□ 0.56
Col27a1Q5QNQ9 Gm16432-201ENSMUST00000094273 1663 ntAPPRIS P1 TSL 1 (best) BASIC18.53■□□□□ 0.56
Col27a1Q5QNQ9 Trim14-201ENSMUST00000046897 1429 ntAPPRIS P1 TSL 1 (best) BASIC18.52■□□□□ 0.56
Col27a1Q5QNQ9 1300014J16Rik-201ENSMUST00000219015 1337 ntBASIC18.52■□□□□ 0.56
Col27a1Q5QNQ9 Lyzl4-202ENSMUST00000120918 959 ntAPPRIS P1 TSL 1 (best) BASIC18.52■□□□□ 0.56
Col27a1Q5QNQ9 Gm6345-202ENSMUST00000180900 204 ntBASIC18.52■□□□□ 0.56
Col27a1Q5QNQ9 Pfdn6-201ENSMUST00000025163 807 ntAPPRIS P1 TSL 1 (best) BASIC18.52■□□□□ 0.56
Col27a1Q5QNQ9 Irak1-202ENSMUST00000068286 2537 ntAPPRIS P3 TSL 1 (best) BASIC18.52■□□□□ 0.56
Col27a1Q5QNQ9 Hlx-201ENSMUST00000048572 2278 ntAPPRIS P1 TSL 1 (best) BASIC18.52■□□□□ 0.56
Col27a1Q5QNQ9 P2rx2-203ENSMUST00000195985 2096 ntAPPRIS P4 TSL 1 (best) BASIC18.52■□□□□ 0.56
Col27a1Q5QNQ9 Cyp2r1-207ENSMUST00000211506 1887 ntTSL 5 BASIC18.52■□□□□ 0.56
Col27a1Q5QNQ9 A330009N23Rik-201ENSMUST00000180639 1392 ntTSL 1 (best) BASIC18.51■□□□□ 0.55
Col27a1Q5QNQ9 Gm18025-201ENSMUST00000221733 862 ntBASIC18.51■□□□□ 0.55
Col27a1Q5QNQ9 Wnt10b-201ENSMUST00000023732 2226 ntAPPRIS P1 TSL 5 BASIC18.51■□□□□ 0.55
Col27a1Q5QNQ9 Guca1b-202ENSMUST00000145462 1556 ntTSL 2 BASIC18.51■□□□□ 0.55
Col27a1Q5QNQ9 Efna4-201ENSMUST00000029674 1599 ntAPPRIS P1 TSL 1 (best) BASIC18.51■□□□□ 0.55
Col27a1Q5QNQ9 Rragc-201ENSMUST00000030399 2593 ntAPPRIS P1 TSL 1 (best) BASIC18.51■□□□□ 0.55
Col27a1Q5QNQ9 Mpst-203ENSMUST00000169133 1309 ntAPPRIS P1 TSL 5 BASIC18.51■□□□□ 0.55
Col27a1Q5QNQ9 Gm12356-201ENSMUST00000122854 353 ntTSL 1 (best) BASIC18.51■□□□□ 0.55
Col27a1Q5QNQ9 1810062O18Rik-202ENSMUST00000128848 745 ntTSL 3 BASIC18.51■□□□□ 0.55
Col27a1Q5QNQ9 9130019P16Rik-201ENSMUST00000135612 1019 ntTSL 1 (best) BASIC18.51■□□□□ 0.55
Col27a1Q5QNQ9 Hist3h2ba-201ENSMUST00000078267 614 ntAPPRIS P1 BASIC18.51■□□□□ 0.55
Col27a1Q5QNQ9 Hpdl-201ENSMUST00000055436 1804 ntAPPRIS P1 BASIC18.5■□□□□ 0.55
Col27a1Q5QNQ9 Bcl11b-202ENSMUST00000109887 2522 ntAPPRIS ALT2 TSL 1 (best) BASIC18.5■□□□□ 0.55
Col27a1Q5QNQ9 Lpcat4-201ENSMUST00000028554 2275 ntAPPRIS P1 TSL 1 (best) BASIC18.5■□□□□ 0.55
Col27a1Q5QNQ9 Cdpf1-204ENSMUST00000144067 761 ntAPPRIS P1 TSL 2 BASIC18.5■□□□□ 0.55
Col27a1Q5QNQ9 Otx2os1-204ENSMUST00000227221 751 ntBASIC18.5■□□□□ 0.55
Col27a1Q5QNQ9 Uchl3-201ENSMUST00000002289 903 ntAPPRIS P1 TSL 1 (best) BASIC18.5■□□□□ 0.55
Col27a1Q5QNQ9 Lce1i-201ENSMUST00000090866 731 ntAPPRIS P1 TSL 1 (best) BASIC18.5■□□□□ 0.55
Col27a1Q5QNQ9 Hoxb6-202ENSMUST00000173432 1964 ntAPPRIS P1 TSL 5 BASIC18.5■□□□□ 0.55
Col27a1Q5QNQ9 Gfra4-202ENSMUST00000066958 783 ntAPPRIS ALT2 TSL 1 (best) BASIC18.49■□□□□ 0.55
Col27a1Q5QNQ9 Gm32699-201ENSMUST00000221728 1988 ntBASIC18.49■□□□□ 0.55
Col27a1Q5QNQ9 Gm26775-201ENSMUST00000180684 2197 ntTSL 5 BASIC18.49■□□□□ 0.55
Col27a1Q5QNQ9 Cebpa-202ENSMUST00000205391 2161 ntTSL 5 BASIC18.49■□□□□ 0.55
Col27a1Q5QNQ9 Ing2-201ENSMUST00000080353 2812 ntAPPRIS P1 TSL 1 (best) BASIC18.49■□□□□ 0.55
Col27a1Q5QNQ9 Tpsg1-202ENSMUST00000160377 1040 ntTSL 1 (best) BASIC18.49■□□□□ 0.55
Col27a1Q5QNQ9 Gm16475-201ENSMUST00000207306 512 ntTSL 2 BASIC18.49■□□□□ 0.55
Col27a1Q5QNQ9 Gm18032-201ENSMUST00000222541 538 ntBASIC18.49■□□□□ 0.55
Col27a1Q5QNQ9 Odf3b-204ENSMUST00000227834 930 ntBASIC18.49■□□□□ 0.55
Col27a1Q5QNQ9 Adgrv1-211ENSMUST00000146749 1592 ntTSL 1 (best) BASIC18.48■□□□□ 0.55
Col27a1Q5QNQ9 Mgrn1-202ENSMUST00000070658 3290 ntAPPRIS P3 TSL 1 (best) BASIC18.48■□□□□ 0.55
Col27a1Q5QNQ9 Sdf4-204ENSMUST00000105579 1670 ntAPPRIS P1 TSL 1 (best) BASIC18.48■□□□□ 0.55
Col27a1Q5QNQ9 Flg-201ENSMUST00000050758 1488 ntBASIC18.48■□□□□ 0.55
Col27a1Q5QNQ9 Gm14464-201ENSMUST00000119658 1254 ntBASIC18.48■□□□□ 0.55
Col27a1Q5QNQ9 AC156016.1-201ENSMUST00000227190 1035 ntBASIC18.48■□□□□ 0.55
Col27a1Q5QNQ9 Zfp524-201ENSMUST00000086349 1142 ntAPPRIS P1 TSL 1 (best) BASIC18.48■□□□□ 0.55
Col27a1Q5QNQ9 Hnrnph3-202ENSMUST00000118898 2168 ntAPPRIS ALT1 TSL 5 BASIC18.48■□□□□ 0.55
Col27a1Q5QNQ9 5730488B01Rik-201ENSMUST00000192889 2311 ntBASIC18.48■□□□□ 0.55
Col27a1Q5QNQ9 Gm16386-201ENSMUST00000181397 1423 ntTSL 1 (best) BASIC18.48■□□□□ 0.55
Col27a1Q5QNQ9 Cd37-209ENSMUST00000211373 1428 ntAPPRIS ALT2 TSL 1 (best) BASIC18.48■□□□□ 0.55
Col27a1Q5QNQ9 Rad1-201ENSMUST00000022856 1514 ntAPPRIS P1 TSL 1 (best) BASIC18.48■□□□□ 0.55
Col27a1Q5QNQ9 Insc-208ENSMUST00000169913 2321 ntAPPRIS P1 TSL 5 BASIC18.47■□□□□ 0.55
Col27a1Q5QNQ9 Hif1a-203ENSMUST00000110464 1759 ntTSL 1 (best) BASIC18.47■□□□□ 0.55
Col27a1Q5QNQ9 Arl2-201ENSMUST00000025893 1144 ntAPPRIS P1 TSL 1 (best) BASIC18.47■□□□□ 0.55
Col27a1Q5QNQ9 Fgf9-202ENSMUST00000074654 1198 ntTSL 1 (best) BASIC18.47■□□□□ 0.55
Col27a1Q5QNQ9 Dpf1-202ENSMUST00000065181 1574 ntAPPRIS ALT1 TSL 5 BASIC18.47■□□□□ 0.55
Col27a1Q5QNQ9 Vgll2-202ENSMUST00000163017 1650 ntAPPRIS P3 TSL 1 (best) BASIC18.47■□□□□ 0.55
Col27a1Q5QNQ9 Pcgf6-201ENSMUST00000026032 2098 ntAPPRIS P1 TSL 1 (best) BASIC18.47■□□□□ 0.55
Col27a1Q5QNQ9 Bfsp1-202ENSMUST00000099296 2160 ntAPPRIS ALT2 TSL 1 (best) BASIC18.47■□□□□ 0.55
Col27a1Q5QNQ9 Hrh3-202ENSMUST00000163215 1401 ntTSL 5 BASIC18.47■□□□□ 0.55
Retrieved 100 of 76,532 protein–RNA pairs in 27.9 ms