Protein–RNA interactions for Protein: Q5NCC3

Trim41, E3 ubiquitin-protein ligase TRIM41, mousemouse

Predictions only

Length 630 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Trim41Q5NCC3 Hoxc6-201ENSMUST00000001711 1581 ntAPPRIS P1 TSL 1 (best) BASIC32.95■■■□□ 2.86
Trim41Q5NCC3 Pllp-201ENSMUST00000034227 1926 ntAPPRIS P1 TSL 1 (best) BASIC32.94■■■□□ 2.86
Trim41Q5NCC3 Stx4a-201ENSMUST00000033075 1456 ntAPPRIS P1 TSL 1 (best) BASIC32.94■■■□□ 2.86
Trim41Q5NCC3 Irx5-202ENSMUST00000210246 2550 ntTSL 5 BASIC32.94■■■□□ 2.86
Trim41Q5NCC3 Kctd9-201ENSMUST00000078053 3157 ntTSL 1 (best) BASIC32.94■■■□□ 2.86
Trim41Q5NCC3 St3gal4-201ENSMUST00000034537 2095 ntAPPRIS P1 TSL 1 (best) BASIC32.94■■■□□ 2.86
Trim41Q5NCC3 Gm26971-201ENSMUST00000182423 1072 ntBASIC32.94■■■□□ 2.86
Trim41Q5NCC3 Gm44672-201ENSMUST00000206944 1098 ntBASIC32.94■■■□□ 2.86
Trim41Q5NCC3 Tmem250-ps-201ENSMUST00000133808 2483 ntTSL 2 BASIC32.94■■■□□ 2.86
Trim41Q5NCC3 Dynll2-201ENSMUST00000020775 2476 ntAPPRIS P1 TSL 1 (best) BASIC32.94■■■□□ 2.86
Trim41Q5NCC3 Spock1-201ENSMUST00000172326 1320 ntAPPRIS P3 TSL 5 BASIC32.94■■■□□ 2.86
Trim41Q5NCC3 Tbxa2r-202ENSMUST00000220312 1919 ntAPPRIS P1 TSL 1 (best) BASIC32.94■■■□□ 2.86
Trim41Q5NCC3 Stoml1-201ENSMUST00000034883 1984 ntAPPRIS P1 TSL 1 (best) BASIC32.94■■■□□ 2.86
Trim41Q5NCC3 Snapc2-201ENSMUST00000011981 1536 ntAPPRIS P1 TSL 1 (best) BASIC32.93■■■□□ 2.86
Trim41Q5NCC3 Josd2-205ENSMUST00000120852 727 ntAPPRIS P1 TSL 3 BASIC32.93■■■□□ 2.86
Trim41Q5NCC3 Ccl27a-219ENSMUST00000173865 657 ntTSL 1 (best) BASIC32.93■■■□□ 2.86
Trim41Q5NCC3 Mcrip2-201ENSMUST00000026828 816 ntAPPRIS P1 TSL 1 (best) BASIC32.93■■■□□ 2.86
Trim41Q5NCC3 Mrps12-201ENSMUST00000056078 722 ntAPPRIS P1 TSL 1 (best) BASIC32.93■■■□□ 2.86
Trim41Q5NCC3 Lhx2-203ENSMUST00000143783 1696 ntTSL 1 (best) BASIC32.93■■■□□ 2.86
Trim41Q5NCC3 Snx5-201ENSMUST00000028909 2419 ntAPPRIS P1 TSL 1 (best) BASIC32.93■■■□□ 2.86
Trim41Q5NCC3 Chtop-207ENSMUST00000107346 1321 ntTSL 1 (best) BASIC32.93■■■□□ 2.86
Trim41Q5NCC3 Thra-201ENSMUST00000064187 2452 ntTSL 1 (best) BASIC32.93■■■□□ 2.86
Trim41Q5NCC3 Macrod2-206ENSMUST00000110064 4883 ntAPPRIS P2 TSL 1 (best) BASIC32.93■■■□□ 2.86
Trim41Q5NCC3 Adgrv1-211ENSMUST00000146749 1592 ntTSL 1 (best) BASIC32.92■■■□□ 2.86
Trim41Q5NCC3 Msl3l2-201ENSMUST00000063138 2140 ntAPPRIS P1 TSL 1 (best) BASIC32.92■■■□□ 2.86
Trim41Q5NCC3 Ewsr1-204ENSMUST00000093365 1290 ntTSL 5 BASIC32.92■■■□□ 2.86
Trim41Q5NCC3 1700065D16Rik-204ENSMUST00000189348 1540 ntTSL 2 BASIC32.92■■■□□ 2.86
Trim41Q5NCC3 Cdo1-201ENSMUST00000035804 1530 ntAPPRIS P1 TSL 1 (best) BASIC32.92■■■□□ 2.86
Trim41Q5NCC3 Alg9-201ENSMUST00000034561 2873 ntAPPRIS P1 TSL 1 (best) BASIC32.92■■■□□ 2.86
Trim41Q5NCC3 Matk-204ENSMUST00000120265 1618 ntAPPRIS ALT2 TSL 5 BASIC32.91■■■□□ 2.86
Trim41Q5NCC3 Syt5-201ENSMUST00000065957 1750 ntAPPRIS P1 TSL 1 (best) BASIC32.91■■■□□ 2.86
Trim41Q5NCC3 Triobp-202ENSMUST00000109688 2553 ntAPPRIS ALT2 TSL 1 (best) BASIC32.91■■■□□ 2.86
Trim41Q5NCC3 Sae1-201ENSMUST00000094815 1875 ntAPPRIS P1 TSL 1 (best) BASIC32.91■■■□□ 2.86
Trim41Q5NCC3 Grrp1-201ENSMUST00000060050 1226 ntAPPRIS P1 TSL 1 (best) BASIC32.91■■■□□ 2.86
Trim41Q5NCC3 Tex264-203ENSMUST00000169068 1364 ntAPPRIS P1 TSL 1 (best) BASIC32.91■■■□□ 2.86
Trim41Q5NCC3 Slc35f3-201ENSMUST00000108759 2309 ntAPPRIS P1 TSL 1 (best) BASIC32.91■■■□□ 2.86
Trim41Q5NCC3 Map4k3-202ENSMUST00000112389 4231 ntAPPRIS ALT1 TSL 5 BASIC32.91■■■□□ 2.86
Trim41Q5NCC3 Gse1-203ENSMUST00000120493 4610 ntAPPRIS ALT2 TSL 1 (best) BASIC32.9■■■□□ 2.86
Trim41Q5NCC3 Cenps-202ENSMUST00000105695 544 ntTSL 1 (best) BASIC32.9■■■□□ 2.86
Trim41Q5NCC3 1110004F10Rik-202ENSMUST00000106607 1153 ntTSL 1 (best) BASIC32.9■■■□□ 2.86
Trim41Q5NCC3 Gm28374-201ENSMUST00000162374 728 ntAPPRIS P1 TSL 3 BASIC32.9■■■□□ 2.86
Trim41Q5NCC3 Gm10231-201ENSMUST00000181584 441 ntBASIC32.9■■■□□ 2.86
Trim41Q5NCC3 Atp5g2-202ENSMUST00000185641 731 ntAPPRIS P1 TSL 1 (best) BASIC32.9■■■□□ 2.86
Trim41Q5NCC3 Gm10175-202ENSMUST00000208752 441 ntBASIC32.9■■■□□ 2.86
Trim41Q5NCC3 Psmd4-201ENSMUST00000071664 1276 ntAPPRIS ALT2 TSL 1 (best) BASIC32.9■■■□□ 2.86
Trim41Q5NCC3 Atp5g2-201ENSMUST00000075630 441 ntAPPRIS P1 TSL 1 (best) BASIC32.9■■■□□ 2.86
Trim41Q5NCC3 Gm13509-201ENSMUST00000119733 1308 ntBASIC32.9■■■□□ 2.86
Trim41Q5NCC3 AI314180-201ENSMUST00000055822 1478 ntTSL 1 (best) BASIC32.9■■■□□ 2.86
Trim41Q5NCC3 Ppm1b-201ENSMUST00000080217 2753 ntAPPRIS ALT2 TSL 1 (best) BASIC32.89■■■□□ 2.86
Trim41Q5NCC3 Ppp1r14c-201ENSMUST00000043374 2617 ntAPPRIS P1 TSL 1 (best) BASIC32.89■■■□□ 2.86
Trim41Q5NCC3 Arrb2-205ENSMUST00000108568 1777 ntTSL 1 (best) BASIC32.89■■■□□ 2.86
Trim41Q5NCC3 Proca1-203ENSMUST00000108317 1359 ntAPPRIS ALT2 TSL 5 BASIC32.89■■■□□ 2.86
Trim41Q5NCC3 Wdr20-205ENSMUST00000193053 1351 ntTSL 1 (best) BASIC32.89■■■□□ 2.86
Trim41Q5NCC3 Alcam-206ENSMUST00000168071 878 ntTSL 1 (best) BASIC32.89■■■□□ 2.86
Trim41Q5NCC3 Tpgs1-201ENSMUST00000020552 1143 ntAPPRIS P1 TSL 1 (best) BASIC32.89■■■□□ 2.86
Trim41Q5NCC3 Aprt-204ENSMUST00000212093 723 ntTSL 2 BASIC32.89■■■□□ 2.86
Trim41Q5NCC3 Rnf208-201ENSMUST00000060818 1137 ntAPPRIS P1 TSL 1 (best) BASIC32.89■■■□□ 2.86
Trim41Q5NCC3 Homer1-206ENSMUST00000109493 2580 ntTSL 5 BASIC32.89■■■□□ 2.86
Trim41Q5NCC3 Nt5c3b-204ENSMUST00000107398 1635 ntTSL 1 (best) BASIC32.88■■■□□ 2.85
Trim41Q5NCC3 Mum1-201ENSMUST00000020365 2640 ntAPPRIS P1 TSL 1 (best) BASIC32.88■■■□□ 2.85
Trim41Q5NCC3 Olfr322-201ENSMUST00000072030 984 ntAPPRIS P1 BASIC32.88■■■□□ 2.85
Trim41Q5NCC3 Pbx1-206ENSMUST00000176790 1828 ntTSL 1 (best) BASIC32.88■■■□□ 2.85
Trim41Q5NCC3 Naxd-201ENSMUST00000033901 1359 ntTSL 2 BASIC32.87■■■□□ 2.85
Trim41Q5NCC3 Mal2-201ENSMUST00000025356 2950 ntAPPRIS P1 TSL 1 (best) BASIC32.87■■■□□ 2.85
Trim41Q5NCC3 6430500D05Rik-201ENSMUST00000198286 1176 ntBASIC32.87■■■□□ 2.85
Trim41Q5NCC3 Sec11c-201ENSMUST00000025394 807 ntAPPRIS P1 TSL 1 (best) BASIC32.87■■■□□ 2.85
Trim41Q5NCC3 Hist2h2aa2-201ENSMUST00000074976 528 ntAPPRIS P1 BASIC32.87■■■□□ 2.85
Trim41Q5NCC3 Hist2h2aa1-201ENSMUST00000078756 586 ntAPPRIS P1 BASIC32.87■■■□□ 2.85
Trim41Q5NCC3 Hccs-202ENSMUST00000112115 2473 ntAPPRIS P1 TSL 1 (best) BASIC32.87■■■□□ 2.85
Trim41Q5NCC3 Stat5b-201ENSMUST00000004143 5062 ntAPPRIS P1 TSL 1 (best) BASIC32.87■■■□□ 2.85
Trim41Q5NCC3 Hras-207ENSMUST00000168550 2272 ntTSL 5 BASIC32.86■■■□□ 2.85
Trim41Q5NCC3 Sphk1-203ENSMUST00000100201 1800 ntAPPRIS ALT2 TSL 1 (best) BASIC32.86■■■□□ 2.85
Trim41Q5NCC3 Noc2l-201ENSMUST00000179543 2785 ntAPPRIS P2 TSL 1 (best) BASIC32.86■■■□□ 2.85
Trim41Q5NCC3 Selenoo-201ENSMUST00000082439 2383 ntAPPRIS P1 TSL 1 (best) BASIC32.86■■■□□ 2.85
Trim41Q5NCC3 Gm10517-202ENSMUST00000192970 758 ntBASIC32.86■■■□□ 2.85
Trim41Q5NCC3 Rpl38-202ENSMUST00000082092 345 ntAPPRIS P1 TSL 2 BASIC32.86■■■□□ 2.85
Trim41Q5NCC3 Crtc2-201ENSMUST00000029545 2747 ntAPPRIS P1 TSL 1 (best) BASIC32.86■■■□□ 2.85
Trim41Q5NCC3 Tcf7-202ENSMUST00000109071 1742 ntAPPRIS P1 TSL 1 (best) BASIC32.85■■■□□ 2.85
Trim41Q5NCC3 Kif1bp-202ENSMUST00000159704 2622 ntTSL 1 (best) BASIC32.85■■■□□ 2.85
Trim41Q5NCC3 Ajap1-201ENSMUST00000105646 3048 ntAPPRIS P1 TSL 5 BASIC32.85■■■□□ 2.85
Trim41Q5NCC3 Gm13441-201ENSMUST00000140104 1168 ntTSL 1 (best) BASIC32.85■■■□□ 2.85
Trim41Q5NCC3 Psmd3-201ENSMUST00000017365 2148 ntAPPRIS P1 TSL 1 (best) BASIC32.85■■■□□ 2.85
Trim41Q5NCC3 Rab5c-201ENSMUST00000019317 1967 ntTSL 1 (best) BASIC32.85■■■□□ 2.85
Trim41Q5NCC3 Lsm14a-201ENSMUST00000085585 2944 ntAPPRIS P1 TSL 1 (best) BASIC32.84■■■□□ 2.85
Trim41Q5NCC3 Gm5475-201ENSMUST00000132119 2608 ntAPPRIS P5 TSL 1 (best) BASIC32.84■■■□□ 2.85
Trim41Q5NCC3 Mpp6-201ENSMUST00000036225 1896 ntTSL 1 (best) BASIC32.84■■■□□ 2.85
Trim41Q5NCC3 Brsk1-201ENSMUST00000048248 2996 ntAPPRIS P1 TSL 1 (best) BASIC32.84■■■□□ 2.85
Trim41Q5NCC3 Gm16262-201ENSMUST00000162306 1751 ntTSL 1 (best) BASIC32.84■■■□□ 2.85
Trim41Q5NCC3 H2-Q6-201ENSMUST00000113879 981 ntAPPRIS P1 TSL 2 BASIC32.84■■■□□ 2.85
Trim41Q5NCC3 Mir142hg-201ENSMUST00000123700 269 ntTSL 1 (best) BASIC32.84■■■□□ 2.85
Trim41Q5NCC3 Serf1-204ENSMUST00000151821 570 ntTSL 2 BASIC32.84■■■□□ 2.85
Trim41Q5NCC3 Gm6728-201ENSMUST00000178117 1065 ntBASIC32.84■■■□□ 2.85
Trim41Q5NCC3 4732471J01Rik-202ENSMUST00000205787 991 ntTSL 1 (best) BASIC32.84■■■□□ 2.85
Trim41Q5NCC3 C1galt1-201ENSMUST00000040159 6092 ntAPPRIS P1 TSL 1 (best) BASIC32.84■■■□□ 2.85
Trim41Q5NCC3 Dusp12-201ENSMUST00000027970 1374 ntAPPRIS P1 TSL 1 (best) BASIC32.83■■■□□ 2.85
Trim41Q5NCC3 Aifm2-204ENSMUST00000105455 1512 ntAPPRIS P1 TSL 1 (best) BASIC32.83■■■□□ 2.85
Trim41Q5NCC3 Dyrk2-201ENSMUST00000004281 6129 ntAPPRIS P1 TSL 1 (best) BASIC32.83■■■□□ 2.85
Trim41Q5NCC3 Gm5643-201ENSMUST00000117081 966 ntBASIC32.83■■■□□ 2.85
Trim41Q5NCC3 Fam50b-201ENSMUST00000039605 1229 ntAPPRIS P1 TSL 1 (best) BASIC32.83■■■□□ 2.85
Trim41Q5NCC3 Foxg1-201ENSMUST00000021333 2941 ntAPPRIS P1 TSL 1 (best) BASIC32.83■■■□□ 2.85
Retrieved 100 of 76,532 protein–RNA pairs in 64.5 ms