Protein–RNA interactions for Protein: Q3ULJ3

Upf3a, MCG3697, isoform CRA_c, mousemouse

Predictions only

Length 422 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Upf3aQ3ULJ3 Mir6982-201ENSMUST00000184354 68 ntBASIC19.95■□□□□ 0.78
Upf3aQ3ULJ3 6430500D05Rik-201ENSMUST00000198286 1176 ntBASIC19.95■□□□□ 0.78
Upf3aQ3ULJ3 AC061963.1-203ENSMUST00000213473 453 ntTSL 3 BASIC19.95■□□□□ 0.78
Upf3aQ3ULJ3 Prss21-201ENSMUST00000024928 1094 ntAPPRIS P1 TSL 1 (best) BASIC19.95■□□□□ 0.78
Upf3aQ3ULJ3 Akip1-201ENSMUST00000033335 1028 ntAPPRIS P1 TSL 1 (best) BASIC19.95■□□□□ 0.78
Upf3aQ3ULJ3 Zfp36l1-202ENSMUST00000165114 1934 ntAPPRIS P1 TSL 5 BASIC19.95■□□□□ 0.78
Upf3aQ3ULJ3 Lgmn-202ENSMUST00000110020 1835 ntAPPRIS P1 TSL 1 (best) BASIC19.95■□□□□ 0.78
Upf3aQ3ULJ3 Ptar1-201ENSMUST00000099560 2064 ntAPPRIS P1 TSL 5 BASIC19.95■□□□□ 0.78
Upf3aQ3ULJ3 Esx1-202ENSMUST00000113066 1692 ntAPPRIS ALT2 TSL 1 (best) BASIC19.94■□□□□ 0.78
Upf3aQ3ULJ3 Rbfox3-206ENSMUST00000120061 2150 ntAPPRIS ALT2 TSL 5 BASIC19.94■□□□□ 0.78
Upf3aQ3ULJ3 Tysnd1-201ENSMUST00000020284 2286 ntAPPRIS P1 TSL 1 (best) BASIC19.94■□□□□ 0.78
Upf3aQ3ULJ3 Serf1-204ENSMUST00000151821 570 ntTSL 2 BASIC19.94■□□□□ 0.78
Upf3aQ3ULJ3 Gm20390-201ENSMUST00000170303 991 ntAPPRIS P1 TSL 5 BASIC19.94■□□□□ 0.78
Upf3aQ3ULJ3 Gm21863-201ENSMUST00000179133 336 ntAPPRIS P1 BASIC19.94■□□□□ 0.78
Upf3aQ3ULJ3 Rwdd1-201ENSMUST00000019917 1090 ntAPPRIS P1 TSL 1 (best) BASIC19.94■□□□□ 0.78
Upf3aQ3ULJ3 Clybl-201ENSMUST00000026625 1231 ntAPPRIS P1 TSL 1 (best) BASIC19.94■□□□□ 0.78
Upf3aQ3ULJ3 Alg9-201ENSMUST00000034561 2873 ntAPPRIS P1 TSL 1 (best) BASIC19.94■□□□□ 0.78
Upf3aQ3ULJ3 Zfp523-201ENSMUST00000002318 2710 ntAPPRIS P1 TSL 1 (best) BASIC19.94■□□□□ 0.78
Upf3aQ3ULJ3 Klk9-201ENSMUST00000005891 1476 ntAPPRIS P1 TSL 1 (best) BASIC19.93■□□□□ 0.78
Upf3aQ3ULJ3 Cpne2-202ENSMUST00000109537 2121 ntAPPRIS ALT2 TSL 1 (best) BASIC19.93■□□□□ 0.78
Upf3aQ3ULJ3 Usp39-201ENSMUST00000070345 2244 ntAPPRIS P1 TSL 1 (best) BASIC19.93■□□□□ 0.78
Upf3aQ3ULJ3 Stard10-211ENSMUST00000210192 1258 ntAPPRIS P1 TSL 5 BASIC19.93■□□□□ 0.78
Upf3aQ3ULJ3 Wdr33-202ENSMUST00000082319 1152 ntTSL 1 (best) BASIC19.93■□□□□ 0.78
Upf3aQ3ULJ3 Nnat-201ENSMUST00000088484 458 ntTSL 2 BASIC19.93■□□□□ 0.78
Upf3aQ3ULJ3 Sphk1-203ENSMUST00000100201 1800 ntAPPRIS ALT2 TSL 1 (best) BASIC19.92■□□□□ 0.78
Upf3aQ3ULJ3 Gart-202ENSMUST00000120450 1865 ntTSL 1 (best) BASIC19.92■□□□□ 0.78
Upf3aQ3ULJ3 Map4k3-202ENSMUST00000112389 4231 ntAPPRIS ALT1 TSL 5 BASIC19.92■□□□□ 0.78
Upf3aQ3ULJ3 Mcmbp-202ENSMUST00000119081 2347 ntTSL 1 (best) BASIC19.92■□□□□ 0.78
Upf3aQ3ULJ3 Smpdl3a-201ENSMUST00000020022 1961 ntAPPRIS P1 TSL 1 (best) BASIC19.92■□□□□ 0.78
Upf3aQ3ULJ3 Pnldc1-201ENSMUST00000163394 1689 ntAPPRIS P1 TSL 1 (best) BASIC19.92■□□□□ 0.78
Upf3aQ3ULJ3 Snca-201ENSMUST00000114268 1280 ntAPPRIS P1 TSL 1 (best) BASIC19.92■□□□□ 0.78
Upf3aQ3ULJ3 Tsen2-203ENSMUST00000130425 638 ntTSL 3 BASIC19.92■□□□□ 0.78
Upf3aQ3ULJ3 Gm29241-201ENSMUST00000189260 1096 ntBASIC19.92■□□□□ 0.78
Upf3aQ3ULJ3 Cst3-201ENSMUST00000028938 860 ntAPPRIS P1 TSL 1 (best) BASIC19.92■□□□□ 0.78
Upf3aQ3ULJ3 Marc1-202ENSMUST00000110992 2152 ntAPPRIS ALT2 TSL 5 BASIC19.92■□□□□ 0.78
Upf3aQ3ULJ3 Ntmt1-201ENSMUST00000041830 1387 ntAPPRIS P1 TSL 1 (best) BASIC19.92■□□□□ 0.78
Upf3aQ3ULJ3 Gse1-203ENSMUST00000120493 4610 ntAPPRIS ALT2 TSL 1 (best) BASIC19.91■□□□□ 0.78
Upf3aQ3ULJ3 E030030I06Rik-202ENSMUST00000179054 2081 ntAPPRIS P4 TSL 1 (best) BASIC19.91■□□□□ 0.78
Upf3aQ3ULJ3 Rapgef1-201ENSMUST00000091146 6212 ntAPPRIS ALT2 TSL 1 (best) BASIC19.91■□□□□ 0.78
Upf3aQ3ULJ3 Klhl32-201ENSMUST00000084781 2287 ntTSL 1 (best) BASIC19.91■□□□□ 0.78
Upf3aQ3ULJ3 Mpp6-201ENSMUST00000036225 1896 ntTSL 1 (best) BASIC19.91■□□□□ 0.78
Upf3aQ3ULJ3 Gm17035-201ENSMUST00000170557 419 ntTSL 3 BASIC19.91■□□□□ 0.78
Upf3aQ3ULJ3 Gm10830-201ENSMUST00000186379 636 ntTSL 5 BASIC19.91■□□□□ 0.78
Upf3aQ3ULJ3 Aprt-201ENSMUST00000006764 849 ntAPPRIS P1 TSL 1 (best) BASIC19.91■□□□□ 0.78
Upf3aQ3ULJ3 Hfe2-201ENSMUST00000049208 2028 ntAPPRIS P1 TSL 1 (best) BASIC19.91■□□□□ 0.78
Upf3aQ3ULJ3 Prr22-201ENSMUST00000168666 1350 ntAPPRIS P1 TSL 3 BASIC19.91■□□□□ 0.78
Upf3aQ3ULJ3 9130221H12Rik-201ENSMUST00000169914 1465 ntTSL 1 (best) BASIC19.91■□□□□ 0.78
Upf3aQ3ULJ3 Nkd1-203ENSMUST00000211113 1474 ntTSL 5 BASIC19.91■□□□□ 0.78
Upf3aQ3ULJ3 Kcne1l-201ENSMUST00000134825 1543 ntAPPRIS P1 BASIC19.91■□□□□ 0.78
Upf3aQ3ULJ3 D16Ertd472e-202ENSMUST00000114219 1576 ntAPPRIS P1 TSL 1 (best) BASIC19.91■□□□□ 0.78
Upf3aQ3ULJ3 Magi2-202ENSMUST00000101558 6530 ntTSL 1 (best) BASIC19.91■□□□□ 0.78
Upf3aQ3ULJ3 Gm43672-201ENSMUST00000199072 1731 ntBASIC19.9■□□□□ 0.78
Upf3aQ3ULJ3 Ewsr1-205ENSMUST00000102930 2174 ntAPPRIS ALT2 TSL 5 BASIC19.9■□□□□ 0.78
Upf3aQ3ULJ3 Fam20b-201ENSMUST00000086153 4414 ntAPPRIS P1 TSL 1 (best) BASIC19.9■□□□□ 0.78
Upf3aQ3ULJ3 Selenos-201ENSMUST00000101801 1191 ntAPPRIS P2 TSL 1 (best) BASIC19.9■□□□□ 0.78
Upf3aQ3ULJ3 Gm11249-201ENSMUST00000117071 859 ntBASIC19.9■□□□□ 0.78
Upf3aQ3ULJ3 Gm19094-201ENSMUST00000209791 1246 ntBASIC19.9■□□□□ 0.78
Upf3aQ3ULJ3 Crybb1-201ENSMUST00000031286 882 ntAPPRIS P1 TSL 1 (best) BASIC19.9■□□□□ 0.78
Upf3aQ3ULJ3 Tor2a-201ENSMUST00000009707 1536 ntAPPRIS P1 TSL 1 (best) BASIC19.9■□□□□ 0.78
Upf3aQ3ULJ3 Hras-207ENSMUST00000168550 2272 ntTSL 5 BASIC19.9■□□□□ 0.78
Upf3aQ3ULJ3 Zfp69-201ENSMUST00000106280 2362 ntAPPRIS P1 TSL 5 BASIC19.9■□□□□ 0.78
Upf3aQ3ULJ3 Tmem250-ps-201ENSMUST00000133808 2483 ntTSL 2 BASIC19.9■□□□□ 0.78
Upf3aQ3ULJ3 Kalrn-208ENSMUST00000114961 6128 ntTSL 5 BASIC19.89■□□□□ 0.77
Upf3aQ3ULJ3 Rpl36al-202ENSMUST00000110619 1276 ntAPPRIS P1 BASIC19.89■□□□□ 0.77
Upf3aQ3ULJ3 Atp8a1-204ENSMUST00000113652 854 ntTSL 1 (best) BASIC19.89■□□□□ 0.77
Upf3aQ3ULJ3 Josd2-205ENSMUST00000120852 727 ntAPPRIS P1 TSL 3 BASIC19.89■□□□□ 0.77
Upf3aQ3ULJ3 1110065P20Rik-203ENSMUST00000137769 659 ntTSL 1 (best) BASIC19.89■□□□□ 0.77
Upf3aQ3ULJ3 Gfi1-202ENSMUST00000065478 2639 ntAPPRIS ALT2 TSL 1 (best) BASIC19.89■□□□□ 0.77
Upf3aQ3ULJ3 Tmem91-201ENSMUST00000079439 877 ntAPPRIS P1 TSL 1 (best) BASIC19.89■□□□□ 0.77
Upf3aQ3ULJ3 Elavl1-201ENSMUST00000098950 5743 ntAPPRIS P1 TSL 1 (best) BASIC19.89■□□□□ 0.77
Upf3aQ3ULJ3 Kif27-203ENSMUST00000225388 5121 ntAPPRIS P1 BASIC19.89■□□□□ 0.77
Upf3aQ3ULJ3 H19-202ENSMUST00000136359 2286 ntTSL 1 (best) BASIC19.88■□□□□ 0.77
Upf3aQ3ULJ3 Slc9a3r2-201ENSMUST00000002572 2118 ntAPPRIS P1 TSL 1 (best) BASIC19.88■□□□□ 0.77
Upf3aQ3ULJ3 Krt24-201ENSMUST00000017255 1847 ntAPPRIS P1 TSL 1 (best) BASIC19.88■□□□□ 0.77
Upf3aQ3ULJ3 Nol7-201ENSMUST00000071926 1800 ntAPPRIS P2 TSL 1 (best) BASIC19.88■□□□□ 0.77
Upf3aQ3ULJ3 Mboat4-201ENSMUST00000095345 1836 ntAPPRIS P1 TSL 1 (best) BASIC19.88■□□□□ 0.77
Upf3aQ3ULJ3 Tmem164-206ENSMUST00000112896 5224 ntAPPRIS P1 TSL 1 (best) BASIC19.88■□□□□ 0.77
Upf3aQ3ULJ3 Trim33-202ENSMUST00000106860 5025 ntAPPRIS ALT2 TSL 1 (best) BASIC19.88■□□□□ 0.77
Upf3aQ3ULJ3 Notumos-201ENSMUST00000151998 2659 ntBASIC19.88■□□□□ 0.77
Upf3aQ3ULJ3 Hmga1-202ENSMUST00000117254 1328 ntAPPRIS P3 TSL 2 BASIC19.88■□□□□ 0.77
Upf3aQ3ULJ3 Dohh-206ENSMUST00000131968 672 ntAPPRIS P1 TSL 3 BASIC19.88■□□□□ 0.77
Upf3aQ3ULJ3 Olfr718-ps1-204ENSMUST00000218872 963 ntAPPRIS ALT2 BASIC19.88■□□□□ 0.77
Upf3aQ3ULJ3 Prdx5-201ENSMUST00000025904 1262 ntAPPRIS P2 TSL 1 (best) BASIC19.88■□□□□ 0.77
Upf3aQ3ULJ3 Mrps33-201ENSMUST00000031978 1107 ntAPPRIS P1 TSL 1 (best) BASIC19.88■□□□□ 0.77
Upf3aQ3ULJ3 Krt1-201ENSMUST00000023790 2445 ntAPPRIS P1 TSL 1 (best) BASIC19.88■□□□□ 0.77
Upf3aQ3ULJ3 Ung-202ENSMUST00000102584 2136 ntAPPRIS P3 TSL 1 (best) BASIC19.88■□□□□ 0.77
Upf3aQ3ULJ3 Rchy1-201ENSMUST00000031345 1967 ntAPPRIS P1 TSL 1 (best) BASIC19.88■□□□□ 0.77
Upf3aQ3ULJ3 6430573P05Rik-203ENSMUST00000195547 2457 ntBASIC19.87■□□□□ 0.77
Upf3aQ3ULJ3 Nhlh1-201ENSMUST00000059794 2464 ntAPPRIS P1 TSL 1 (best) BASIC19.87■□□□□ 0.77
Upf3aQ3ULJ3 Raph1-202ENSMUST00000090293 2409 ntAPPRIS ALT2 TSL 5 BASIC19.87■□□□□ 0.77
Upf3aQ3ULJ3 Osbpl2-201ENSMUST00000040668 2805 ntAPPRIS P1 TSL 1 (best) BASIC19.87■□□□□ 0.77
Upf3aQ3ULJ3 Gm21596-201ENSMUST00000178049 1316 ntBASIC19.87■□□□□ 0.77
Upf3aQ3ULJ3 Gm11527-201ENSMUST00000153795 596 ntTSL 2 BASIC19.87■□□□□ 0.77
Upf3aQ3ULJ3 Aprt-204ENSMUST00000212093 723 ntTSL 2 BASIC19.87■□□□□ 0.77
Upf3aQ3ULJ3 Cox8a-201ENSMUST00000039758 545 ntAPPRIS P1 TSL 1 (best) BASIC19.87■□□□□ 0.77
Upf3aQ3ULJ3 Pacsin3-215ENSMUST00000168916 1859 ntAPPRIS P1 TSL 1 (best) BASIC19.87■□□□□ 0.77
Upf3aQ3ULJ3 Pacsin3-201ENSMUST00000028694 1862 ntAPPRIS P1 TSL 1 (best) BASIC19.87■□□□□ 0.77
Upf3aQ3ULJ3 Inhbb-201ENSMUST00000038765 4255 ntAPPRIS P1 TSL 1 (best) BASIC19.87■□□□□ 0.77
Upf3aQ3ULJ3 Tm9sf3-201ENSMUST00000025989 6144 ntAPPRIS P1 TSL 1 (best) BASIC19.87■□□□□ 0.77
Upf3aQ3ULJ3 Cyp4f13-201ENSMUST00000075253 1752 ntAPPRIS P1 TSL 1 (best) BASIC19.86■□□□□ 0.77
Retrieved 100 of 76,532 protein–RNA pairs in 21.1 ms