Protein–RNA interactions for Protein: O89116

Vti1a, Vesicle transport through interaction with t-SNAREs homolog 1A, mousemouse

Predictions only

Length 217 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Vti1aO89116 Gm43545-201ENSMUST00000196765 2779 ntBASIC20.34■□□□□ 0.85
Vti1aO89116 1700067K01Rik-203ENSMUST00000172548 986 ntAPPRIS P2 TSL 1 (best) BASIC20.34■□□□□ 0.85
Vti1aO89116 Map1lc3b-203ENSMUST00000181521 775 ntTSL 3 BASIC20.34■□□□□ 0.85
Vti1aO89116 Rian-206ENSMUST00000182119 329 ntTSL 3 BASIC20.34■□□□□ 0.85
Vti1aO89116 Chd5-205ENSMUST00000164662 9375 ntAPPRIS ALT2 TSL 1 (best) BASIC20.34■□□□□ 0.85
Vti1aO89116 Gm21992-201ENSMUST00000172000 1434 ntAPPRIS P1 TSL 2 BASIC20.34■□□□□ 0.85
Vti1aO89116 Gm21992-206ENSMUST00000179909 1435 ntTSL 5 BASIC20.34■□□□□ 0.85
Vti1aO89116 Fam3c-203ENSMUST00000163963 1617 ntTSL 1 (best) BASIC20.34■□□□□ 0.85
Vti1aO89116 Lmtk3-204ENSMUST00000209617 5051 ntAPPRIS ALT2 TSL 1 (best) BASIC20.34■□□□□ 0.85
Vti1aO89116 Agtpbp1-222ENSMUST00000171606 3037 ntTSL 1 (best) BASIC20.34■□□□□ 0.85
Vti1aO89116 Foxf2-201ENSMUST00000042054 2363 ntAPPRIS P1 TSL 1 (best) BASIC20.34■□□□□ 0.85
Vti1aO89116 Lypla2-202ENSMUST00000105852 1588 ntAPPRIS P1 TSL 1 (best) BASIC20.34■□□□□ 0.85
Vti1aO89116 Gsto2-201ENSMUST00000056159 1351 ntAPPRIS P1 TSL 1 (best) BASIC20.34■□□□□ 0.85
Vti1aO89116 Gm7290-201ENSMUST00000104990 617 ntBASIC20.33■□□□□ 0.85
Vti1aO89116 Gm12918-201ENSMUST00000120234 636 ntBASIC20.33■□□□□ 0.85
Vti1aO89116 Gm15710-201ENSMUST00000121821 636 ntBASIC20.33■□□□□ 0.85
Vti1aO89116 Fam98c-203ENSMUST00000134176 1189 ntTSL 2 BASIC20.33■□□□□ 0.85
Vti1aO89116 Gm5075-201ENSMUST00000196916 622 ntBASIC20.33■□□□□ 0.85
Vti1aO89116 Snrpd3-203ENSMUST00000220229 442 ntTSL 3 BASIC20.33■□□□□ 0.85
Vti1aO89116 Rpl13-ps6-201ENSMUST00000079761 636 ntBASIC20.33■□□□□ 0.85
Vti1aO89116 Rpl13-ps3-201ENSMUST00000079960 624 ntBASIC20.33■□□□□ 0.85
Vti1aO89116 Stx1a-201ENSMUST00000005509 2162 ntAPPRIS P1 TSL 1 (best) BASIC20.33■□□□□ 0.85
Vti1aO89116 Aire-203ENSMUST00000105396 1749 ntAPPRIS ALT2 TSL 1 (best) BASIC20.33■□□□□ 0.84
Vti1aO89116 Aire-214ENSMUST00000154374 1712 ntAPPRIS ALT2 TSL 1 (best) BASIC20.33■□□□□ 0.84
Vti1aO89116 Aire-215ENSMUST00000155021 1737 ntAPPRIS ALT2 TSL 1 (best) BASIC20.33■□□□□ 0.84
Vti1aO89116 1810010K12Rik-201ENSMUST00000070378 1324 ntBASIC20.32■□□□□ 0.84
Vti1aO89116 Mgat2-201ENSMUST00000060579 2614 ntAPPRIS P1 BASIC20.32■□□□□ 0.84
Vti1aO89116 Mlf2-201ENSMUST00000032214 1451 ntAPPRIS P1 TSL 1 (best) BASIC20.32■□□□□ 0.84
Vti1aO89116 Josd2-204ENSMUST00000118628 864 ntAPPRIS P1 TSL 2 BASIC20.32■□□□□ 0.84
Vti1aO89116 Coro1a-209ENSMUST00000173108 1170 ntTSL 5 BASIC20.32■□□□□ 0.84
Vti1aO89116 CT010467.1-202ENSMUST00000205406 714 ntBASIC20.32■□□□□ 0.84
Vti1aO89116 Josd2-201ENSMUST00000035844 930 ntAPPRIS P1 TSL 1 (best) BASIC20.32■□□□□ 0.84
Vti1aO89116 Dxo-201ENSMUST00000046244 1519 ntAPPRIS P1 TSL 1 (best) BASIC20.32■□□□□ 0.84
Vti1aO89116 Cbfb-202ENSMUST00000109392 2891 ntAPPRIS ALT1 TSL 1 (best) BASIC20.32■□□□□ 0.84
Vti1aO89116 Fgfr1-215ENSMUST00000179592 5041 ntTSL 5 BASIC20.31■□□□□ 0.84
Vti1aO89116 Zfp771-201ENSMUST00000052509 1484 ntAPPRIS P1 TSL 1 (best) BASIC20.31■□□□□ 0.84
Vti1aO89116 Dkk4-201ENSMUST00000033936 1315 ntAPPRIS P1 TSL 1 (best) BASIC20.31■□□□□ 0.84
Vti1aO89116 Eif1-201ENSMUST00000049385 1322 ntAPPRIS P1 TSL 1 (best) BASIC20.31■□□□□ 0.84
Vti1aO89116 Sstr1-201ENSMUST00000044299 2014 ntAPPRIS P1 TSL 1 (best) BASIC20.31■□□□□ 0.84
Vti1aO89116 Rela-201ENSMUST00000025867 2716 ntAPPRIS P1 TSL 1 (best) BASIC20.31■□□□□ 0.84
Vti1aO89116 Baiap2-205ENSMUST00000106233 2442 ntAPPRIS ALT2 TSL 5 BASIC20.31■□□□□ 0.84
Vti1aO89116 Aifm2-201ENSMUST00000067857 1442 ntAPPRIS P1 TSL 1 (best) BASIC20.31■□□□□ 0.84
Vti1aO89116 Tsc22d4-205ENSMUST00000110985 790 ntAPPRIS ALT2 TSL 2 BASIC20.31■□□□□ 0.84
Vti1aO89116 Gm15155-201ENSMUST00000112542 1009 ntAPPRIS P1 TSL 1 (best) BASIC20.31■□□□□ 0.84
Vti1aO89116 Zfp637-201ENSMUST00000112858 650 ntTSL 2 BASIC20.31■□□□□ 0.84
Vti1aO89116 Zfp637-203ENSMUST00000112860 1231 ntTSL 1 (best) BASIC20.31■□□□□ 0.84
Vti1aO89116 Cdk19os-202ENSMUST00000143103 1124 ntTSL 1 (best) BASIC20.31■□□□□ 0.84
Vti1aO89116 Foxi3-202ENSMUST00000163089 1278 ntAPPRIS ALT2 TSL 5 BASIC20.31■□□□□ 0.84
Vti1aO89116 Ndufa5-201ENSMUST00000023851 875 ntAPPRIS P1 TSL 1 (best) BASIC20.31■□□□□ 0.84
Vti1aO89116 Park7-201ENSMUST00000030805 908 ntAPPRIS P1 TSL 1 (best) BASIC20.31■□□□□ 0.84
Vti1aO89116 Foxi3-201ENSMUST00000069634 1206 ntAPPRIS P2 TSL 5 BASIC20.31■□□□□ 0.84
Vti1aO89116 Ubxn1-201ENSMUST00000096255 1041 ntAPPRIS P1 TSL 1 (best) BASIC20.31■□□□□ 0.84
Vti1aO89116 B130046B21Rik-201ENSMUST00000181510 2216 ntTSL 1 (best) BASIC20.31■□□□□ 0.84
Vti1aO89116 Cdc37l1-205ENSMUST00000224599 1769 ntBASIC20.31■□□□□ 0.84
Vti1aO89116 Lefty1-201ENSMUST00000037361 1620 ntAPPRIS P1 TSL 1 (best) BASIC20.31■□□□□ 0.84
Vti1aO89116 Fam49b-207ENSMUST00000228226 1896 ntAPPRIS P1 BASIC20.3■□□□□ 0.84
Vti1aO89116 Barx2-201ENSMUST00000116615 1968 ntAPPRIS P1 TSL 1 (best) BASIC20.3■□□□□ 0.84
Vti1aO89116 Hexa-201ENSMUST00000026262 1996 ntAPPRIS P1 TSL 1 (best) BASIC20.3■□□□□ 0.84
Vti1aO89116 Pus1-201ENSMUST00000031481 1563 ntAPPRIS ALT2 TSL 1 (best) BASIC20.3■□□□□ 0.84
Vti1aO89116 H2-Q7-203ENSMUST00000078205 1419 ntTSL 5 BASIC20.3■□□□□ 0.84
Vti1aO89116 Cacna1a-202ENSMUST00000122053 7589 ntAPPRIS ALT2 TSL 1 (best) BASIC20.3■□□□□ 0.84
Vti1aO89116 Ptar1-201ENSMUST00000099560 2064 ntAPPRIS P1 TSL 5 BASIC20.3■□□□□ 0.84
Vti1aO89116 Rbfox3-202ENSMUST00000069343 1553 ntTSL 1 (best) BASIC20.29■□□□□ 0.84
Vti1aO89116 Hnrnph3-202ENSMUST00000118898 2168 ntAPPRIS ALT1 TSL 5 BASIC20.29■□□□□ 0.84
Vti1aO89116 Mael-201ENSMUST00000038782 1546 ntAPPRIS P1 TSL 1 (best) BASIC20.29■□□□□ 0.84
Vti1aO89116 Lypla1-208ENSMUST00000150971 877 ntTSL 1 (best) BASIC20.29■□□□□ 0.84
Vti1aO89116 4930519P11Rik-201ENSMUST00000181369 501 ntAPPRIS P1 BASIC20.29■□□□□ 0.84
Vti1aO89116 Lhx1-204ENSMUST00000184646 1201 ntTSL 5 BASIC20.29■□□□□ 0.84
Vti1aO89116 BC107364-201ENSMUST00000093126 1159 ntAPPRIS P4 TSL 1 (best) BASIC20.29■□□□□ 0.84
Vti1aO89116 BC107364-202ENSMUST00000098841 1065 ntAPPRIS ALT2 TSL 1 (best) BASIC20.29■□□□□ 0.84
Vti1aO89116 Zfp777-202ENSMUST00000114583 3111 ntAPPRIS P3 TSL 5 BASIC20.29■□□□□ 0.84
Vti1aO89116 Ccdc85c-202ENSMUST00000222310 4298 ntAPPRIS P2 TSL 5 BASIC20.29■□□□□ 0.84
Vti1aO89116 Slc3a2-201ENSMUST00000010239 1819 ntAPPRIS P3 TSL 1 (best) BASIC20.29■□□□□ 0.84
Vti1aO89116 Nova2-202ENSMUST00000220302 8372 ntAPPRIS P1 TSL 5 BASIC20.29■□□□□ 0.84
Vti1aO89116 Nova2-201ENSMUST00000032571 8372 ntTSL 5 BASIC20.29■□□□□ 0.84
Vti1aO89116 Spg7-211ENSMUST00000153285 2481 ntAPPRIS ALT2 TSL 5 BASIC20.29■□□□□ 0.84
Vti1aO89116 Capzb-204ENSMUST00000102508 1674 ntAPPRIS ALT1 TSL 1 (best) BASIC20.29■□□□□ 0.84
Vti1aO89116 Notch4-201ENSMUST00000015612 6591 ntAPPRIS P1 TSL 1 (best) BASIC20.29■□□□□ 0.84
Vti1aO89116 Ulk2-201ENSMUST00000004920 5743 ntAPPRIS P1 TSL 1 (best) BASIC20.28■□□□□ 0.84
Vti1aO89116 Ahsa2-201ENSMUST00000020529 3023 ntAPPRIS P3 TSL 1 (best) BASIC20.28■□□□□ 0.84
Vti1aO89116 Oxsr1-201ENSMUST00000040853 4647 ntAPPRIS P1 TSL 1 (best) BASIC20.28■□□□□ 0.84
Vti1aO89116 Kcnd3-202ENSMUST00000098761 7169 ntAPPRIS ALT1 TSL 1 (best) BASIC20.28■□□□□ 0.84
Vti1aO89116 2610035F20Rik-202ENSMUST00000177306 1149 ntTSL 1 (best) BASIC20.28■□□□□ 0.84
Vti1aO89116 Gm20760-201ENSMUST00000179197 648 ntBASIC20.28■□□□□ 0.84
Vti1aO89116 Ndufa12-204ENSMUST00000179990 566 ntTSL 1 (best) BASIC20.28■□□□□ 0.84
Vti1aO89116 C430014B12Rik-202ENSMUST00000186858 657 ntTSL 2 BASIC20.28■□□□□ 0.84
Vti1aO89116 Zfp710-204ENSMUST00000206039 2194 ntAPPRIS ALT2 TSL 1 (best) BASIC20.28■□□□□ 0.84
Vti1aO89116 Wdr41-202ENSMUST00000159647 2289 ntTSL 5 BASIC20.28■□□□□ 0.84
Vti1aO89116 Wdr41-206ENSMUST00000167155 2289 ntTSL 1 (best) BASIC20.28■□□□□ 0.84
Vti1aO89116 Qrich1-206ENSMUST00000193258 2291 ntTSL 2 BASIC20.28■□□□□ 0.84
Vti1aO89116 Stx2-202ENSMUST00000100680 2769 ntAPPRIS ALT2 TSL 1 (best) BASIC20.28■□□□□ 0.84
Vti1aO89116 Smad2-205ENSMUST00000168423 2857 ntAPPRIS P3 TSL 1 (best) BASIC20.28■□□□□ 0.84
Vti1aO89116 Peli2-201ENSMUST00000073150 5900 ntAPPRIS P1 TSL 1 (best) BASIC20.28■□□□□ 0.84
Vti1aO89116 Maff-202ENSMUST00000163691 1905 ntAPPRIS P1 TSL 1 (best) BASIC20.27■□□□□ 0.84
Vti1aO89116 Chtop-202ENSMUST00000049937 2012 ntAPPRIS P1 TSL 1 (best) BASIC20.27■□□□□ 0.84
Vti1aO89116 Cers2-201ENSMUST00000015858 2216 ntAPPRIS P1 TSL 1 (best) BASIC20.27■□□□□ 0.84
Vti1aO89116 Idnk-202ENSMUST00000109868 1462 ntTSL 1 (best) BASIC20.27■□□□□ 0.84
Vti1aO89116 Etv2-201ENSMUST00000108147 1048 ntAPPRIS P1 TSL 1 (best) BASIC20.27■□□□□ 0.84
Vti1aO89116 Gssos2-201ENSMUST00000130859 727 ntTSL 3 BASIC20.27■□□□□ 0.84
Vti1aO89116 Ptbp3-204ENSMUST00000140925 606 ntTSL 3 BASIC20.27■□□□□ 0.84
Retrieved 100 of 76,532 protein–RNA pairs in 21.8 ms