Protein–RNA interactions for Protein: O88609

Lmx1b, LIM homeobox transcription factor 1-beta, mousemouse

Predictions only

Length 395 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Lmx1bO88609 Lgr4-201ENSMUST00000046548 5060 ntAPPRIS P1 TSL 2 BASIC17.08■□□□□ 0.33
Lmx1bO88609 Sos1-201ENSMUST00000068714 8919 ntAPPRIS P1 TSL 2 BASIC17.08■□□□□ 0.33
Lmx1bO88609 Patz1-203ENSMUST00000094471 2930 ntTSL 1 (best) BASIC17.08■□□□□ 0.33
Lmx1bO88609 1700008J07Rik-201ENSMUST00000185351 2432 ntBASIC17.08■□□□□ 0.33
Lmx1bO88609 Chtop-202ENSMUST00000049937 2012 ntAPPRIS P1 TSL 1 (best) BASIC17.08■□□□□ 0.33
Lmx1bO88609 Rab7-202ENSMUST00000113596 1657 ntAPPRIS P1 TSL 1 (best) BASIC17.08■□□□□ 0.32
Lmx1bO88609 Gpn2-201ENSMUST00000030661 1367 ntAPPRIS P1 TSL 1 (best) BASIC17.08■□□□□ 0.32
Lmx1bO88609 Gm15155-201ENSMUST00000112542 1009 ntAPPRIS P1 TSL 1 (best) BASIC17.08■□□□□ 0.32
Lmx1bO88609 3110082J24Rik-201ENSMUST00000127749 327 ntAPPRIS P1 TSL 5 BASIC17.08■□□□□ 0.32
Lmx1bO88609 Gm44210-201ENSMUST00000205253 713 ntTSL 3 BASIC17.08■□□□□ 0.32
Lmx1bO88609 Ttc39a-203ENSMUST00000106619 1778 ntTSL 1 (best) BASIC17.07■□□□□ 0.32
Lmx1bO88609 Mtus2-205ENSMUST00000110515 1792 ntAPPRIS P1 TSL 1 (best) BASIC17.07■□□□□ 0.32
Lmx1bO88609 Alg9-201ENSMUST00000034561 2873 ntAPPRIS P1 TSL 1 (best) BASIC17.07■□□□□ 0.32
Lmx1bO88609 Gm7860-201ENSMUST00000121190 879 ntBASIC17.07■□□□□ 0.32
Lmx1bO88609 Gm11691-201ENSMUST00000130963 658 ntTSL 2 BASIC17.07■□□□□ 0.32
Lmx1bO88609 Mir5133-201ENSMUST00000174955 77 ntBASIC17.07■□□□□ 0.32
Lmx1bO88609 Prpf19-201ENSMUST00000025642 2134 ntAPPRIS P1 TSL 1 (best) BASIC17.07■□□□□ 0.32
Lmx1bO88609 Sap30-201ENSMUST00000034022 1178 ntAPPRIS P1 TSL 1 (best) BASIC17.07■□□□□ 0.32
Lmx1bO88609 Ypel3-201ENSMUST00000038614 973 ntAPPRIS P1 TSL 1 (best) BASIC17.07■□□□□ 0.32
Lmx1bO88609 Zdhhc14-201ENSMUST00000089185 3115 ntAPPRIS P1 TSL 1 (best) BASIC17.07■□□□□ 0.32
Lmx1bO88609 Nlgn2-201ENSMUST00000056484 5003 ntAPPRIS P1 TSL 1 (best) BASIC17.06■□□□□ 0.32
Lmx1bO88609 Abhd8-201ENSMUST00000008094 1978 ntAPPRIS P1 TSL 1 (best) BASIC17.06■□□□□ 0.32
Lmx1bO88609 Cd83-201ENSMUST00000015540 2477 ntAPPRIS P1 TSL 1 (best) BASIC17.06■□□□□ 0.32
Lmx1bO88609 Slc35f4-201ENSMUST00000074368 1931 ntAPPRIS P1 TSL 1 (best) BASIC17.06■□□□□ 0.32
Lmx1bO88609 Scube1-202ENSMUST00000043634 5161 ntAPPRIS ALT2 TSL 1 (best) BASIC17.06■□□□□ 0.32
Lmx1bO88609 Tsen54-202ENSMUST00000106481 1862 ntAPPRIS ALT2 TSL 1 (best) BASIC17.06■□□□□ 0.32
Lmx1bO88609 Hoxb6-201ENSMUST00000000704 1321 ntAPPRIS P1 TSL 1 (best) BASIC17.06■□□□□ 0.32
Lmx1bO88609 Rin3-202ENSMUST00000101114 2394 ntTSL 1 (best) BASIC17.06■□□□□ 0.32
Lmx1bO88609 1700030C12Rik-201ENSMUST00000101462 858 ntTSL 5 BASIC17.06■□□□□ 0.32
Lmx1bO88609 Gm53-201ENSMUST00000129907 1172 ntTSL 2 BASIC17.06■□□□□ 0.32
Lmx1bO88609 Areg-201ENSMUST00000031325 1215 ntAPPRIS P1 TSL 1 (best) BASIC17.06■□□□□ 0.32
Lmx1bO88609 Schip1-206ENSMUST00000182719 2156 ntTSL 1 (best) BASIC17.06■□□□□ 0.32
Lmx1bO88609 Ltbr-201ENSMUST00000032489 2107 ntAPPRIS P1 TSL 1 (best) BASIC17.06■□□□□ 0.32
Lmx1bO88609 Ntn5-201ENSMUST00000107742 1574 ntTSL 1 (best) BASIC17.06■□□□□ 0.32
Lmx1bO88609 Rab34-202ENSMUST00000056241 1558 ntTSL 5 BASIC17.06■□□□□ 0.32
Lmx1bO88609 Polg2-201ENSMUST00000021060 1506 ntAPPRIS P1 TSL 1 (best) BASIC17.06■□□□□ 0.32
Lmx1bO88609 Vps26a-201ENSMUST00000092473 2712 ntTSL 1 (best) BASIC17.05■□□□□ 0.32
Lmx1bO88609 Htatip2-202ENSMUST00000207895 1338 ntAPPRIS ALT2 TSL 1 (best) BASIC17.05■□□□□ 0.32
Lmx1bO88609 Tecr-203ENSMUST00000165740 1120 ntTSL 1 (best) BASIC17.05■□□□□ 0.32
Lmx1bO88609 Arl4c-203ENSMUST00000187810 2740 ntAPPRIS P1 TSL 1 (best) BASIC17.05■□□□□ 0.32
Lmx1bO88609 Carm1-202ENSMUST00000115394 3320 ntAPPRIS ALT2 TSL 5 BASIC17.05■□□□□ 0.32
Lmx1bO88609 Maml1-201ENSMUST00000059458 5528 ntAPPRIS P1 TSL 1 (best) BASIC17.05■□□□□ 0.32
Lmx1bO88609 H2-Q7-203ENSMUST00000078205 1419 ntTSL 5 BASIC17.04■□□□□ 0.32
Lmx1bO88609 Cdk11b-202ENSMUST00000105598 2673 ntAPPRIS ALT2 TSL 1 (best) BASIC17.04■□□□□ 0.32
Lmx1bO88609 Stx2-201ENSMUST00000031378 2939 ntAPPRIS P3 TSL 1 (best) BASIC17.04■□□□□ 0.32
Lmx1bO88609 Pthlh-201ENSMUST00000052296 1603 ntAPPRIS P1 TSL 1 (best) BASIC17.04■□□□□ 0.32
Lmx1bO88609 Dnaja4-201ENSMUST00000070070 3003 ntAPPRIS P1 TSL 1 (best) BASIC17.04■□□□□ 0.32
Lmx1bO88609 Polr2c-201ENSMUST00000109521 1580 ntAPPRIS P1 TSL 1 (best) BASIC17.04■□□□□ 0.32
Lmx1bO88609 Fdx1l-201ENSMUST00000010348 812 ntAPPRIS P1 TSL 1 (best) BASIC17.04■□□□□ 0.32
Lmx1bO88609 Gm13534-201ENSMUST00000121169 513 ntBASIC17.04■□□□□ 0.32
Lmx1bO88609 A230065N10Rik-201ENSMUST00000172178 1028 ntBASIC17.04■□□□□ 0.32
Lmx1bO88609 Fxyd1-215ENSMUST00000206474 572 ntAPPRIS P1 TSL 1 (best) BASIC17.04■□□□□ 0.32
Lmx1bO88609 Pop5-201ENSMUST00000081497 1025 ntAPPRIS P1 TSL 5 BASIC17.04■□□□□ 0.32
Lmx1bO88609 Tnpo2-207ENSMUST00000211601 2941 ntTSL 1 (best) BASIC17.04■□□□□ 0.32
Lmx1bO88609 Purb-201ENSMUST00000179343 8319 ntAPPRIS P1 BASIC17.04■□□□□ 0.32
Lmx1bO88609 Rcor1-201ENSMUST00000084968 5684 ntAPPRIS ALT2 TSL 1 (best) BASIC17.04■□□□□ 0.32
Lmx1bO88609 Mafg-201ENSMUST00000058162 4923 ntAPPRIS P1 TSL 1 (best) BASIC17.03■□□□□ 0.32
Lmx1bO88609 Hat1-202ENSMUST00000112122 1899 ntAPPRIS ALT2 TSL 5 BASIC17.03■□□□□ 0.32
Lmx1bO88609 Baiap2l2-201ENSMUST00000165408 2100 ntAPPRIS P1 TSL 1 (best) BASIC17.03■□□□□ 0.32
Lmx1bO88609 Cpne2-201ENSMUST00000048653 2342 ntAPPRIS P2 TSL 1 (best) BASIC17.03■□□□□ 0.32
Lmx1bO88609 Wnt10b-201ENSMUST00000023732 2226 ntAPPRIS P1 TSL 5 BASIC17.03■□□□□ 0.32
Lmx1bO88609 Foxi3-202ENSMUST00000163089 1278 ntAPPRIS ALT2 TSL 5 BASIC17.03■□□□□ 0.32
Lmx1bO88609 Gm45894-201ENSMUST00000211940 651 ntTSL 2 BASIC17.03■□□□□ 0.32
Lmx1bO88609 Gm6365-201ENSMUST00000054711 744 ntBASIC17.03■□□□□ 0.32
Lmx1bO88609 Foxi3-201ENSMUST00000069634 1206 ntAPPRIS P2 TSL 5 BASIC17.03■□□□□ 0.32
Lmx1bO88609 Cldn3-201ENSMUST00000094245 1259 ntAPPRIS P1 BASIC17.03■□□□□ 0.32
Lmx1bO88609 Slc35a3-201ENSMUST00000029569 5725 ntAPPRIS P1 TSL 1 (best) BASIC17.03■□□□□ 0.32
Lmx1bO88609 Kdm3b-201ENSMUST00000043775 6363 ntAPPRIS P1 TSL 1 (best) BASIC17.03■□□□□ 0.32
Lmx1bO88609 Cwh43-202ENSMUST00000065543 2316 ntTSL 1 (best) BASIC17.03■□□□□ 0.32
Lmx1bO88609 Irx3-202ENSMUST00000175795 2748 ntAPPRIS ALT2 TSL 1 (best) BASIC17.03■□□□□ 0.32
Lmx1bO88609 Six3os1-206ENSMUST00000175921 2737 ntTSL 1 (best) BASIC17.03■□□□□ 0.32
Lmx1bO88609 Fam3c-203ENSMUST00000163963 1617 ntTSL 1 (best) BASIC17.03■□□□□ 0.32
Lmx1bO88609 Pex16-201ENSMUST00000028650 1392 ntAPPRIS P1 TSL 1 (best) BASIC17.02■□□□□ 0.32
Lmx1bO88609 Anapc5-205ENSMUST00000197074 2413 ntAPPRIS ALT2 TSL 1 (best) BASIC17.02■□□□□ 0.32
Lmx1bO88609 Anapc5-212ENSMUST00000199406 2413 ntAPPRIS ALT2 TSL 1 (best) BASIC17.02■□□□□ 0.32
Lmx1bO88609 Golga7-201ENSMUST00000051094 1792 ntAPPRIS P1 TSL 1 (best) BASIC17.02■□□□□ 0.32
Lmx1bO88609 Kirrel-201ENSMUST00000041732 2160 ntAPPRIS ALT2 TSL 1 (best) BASIC17.02■□□□□ 0.32
Lmx1bO88609 Tssk6-201ENSMUST00000050373 1335 ntAPPRIS P1 BASIC17.02■□□□□ 0.32
Lmx1bO88609 Bmpr1b-202ENSMUST00000098568 1910 ntAPPRIS P1 TSL 1 (best) BASIC17.02■□□□□ 0.32
Lmx1bO88609 Foxa2-201ENSMUST00000047315 2128 ntAPPRIS P3 TSL 1 (best) BASIC17.02■□□□□ 0.32
Lmx1bO88609 Nfe2-201ENSMUST00000075192 1697 ntAPPRIS P1 TSL 1 (best) BASIC17.02■□□□□ 0.32
Lmx1bO88609 Gm12669-201ENSMUST00000122162 1009 ntBASIC17.02■□□□□ 0.32
Lmx1bO88609 1700003N22Rik-201ENSMUST00000194834 808 ntBASIC17.02■□□□□ 0.32
Lmx1bO88609 Foxk1-202ENSMUST00000198422 687 ntTSL 3 BASIC17.02■□□□□ 0.32
Lmx1bO88609 Ap4s1-201ENSMUST00000021338 1035 ntAPPRIS P1 TSL 1 (best) BASIC17.02■□□□□ 0.32
Lmx1bO88609 Tbc1d25-204ENSMUST00000172020 2441 ntAPPRIS ALT2 TSL 1 (best) BASIC17.02■□□□□ 0.32
Lmx1bO88609 Ralgps2-205ENSMUST00000185198 2229 ntTSL 1 (best) BASIC17.02■□□□□ 0.32
Lmx1bO88609 Lmtk3-201ENSMUST00000072580 4807 ntAPPRIS P2 TSL 1 (best) BASIC17.02■□□□□ 0.31
Lmx1bO88609 Matn4-203ENSMUST00000109358 2056 ntTSL 5 BASIC17.01■□□□□ 0.31
Lmx1bO88609 Gpatch2-201ENSMUST00000044812 1639 ntTSL 1 (best) BASIC17.01■□□□□ 0.31
Lmx1bO88609 A830035A12Rik-201ENSMUST00000147445 861 ntTSL 1 (best) BASIC17.01■□□□□ 0.31
Lmx1bO88609 Map1lc3b-203ENSMUST00000181521 775 ntTSL 3 BASIC17.01■□□□□ 0.31
Lmx1bO88609 Gm45121-201ENSMUST00000205396 1153 ntTSL 5 BASIC17.01■□□□□ 0.31
Lmx1bO88609 Nudt14-202ENSMUST00000221397 1241 ntAPPRIS P1 TSL 1 (best) BASIC17.01■□□□□ 0.31
Lmx1bO88609 Ndufa5-201ENSMUST00000023851 875 ntAPPRIS P1 TSL 1 (best) BASIC17.01■□□□□ 0.31
Lmx1bO88609 Nudt14-201ENSMUST00000002881 734 ntTSL 2 BASIC17.01■□□□□ 0.31
Lmx1bO88609 Vax2-201ENSMUST00000037807 1242 ntAPPRIS P1 TSL 1 (best) BASIC17.01■□□□□ 0.31
Lmx1bO88609 Auh-203ENSMUST00000119311 2627 ntTSL 1 (best) BASIC17.01■□□□□ 0.31
Lmx1bO88609 Nol9-202ENSMUST00000103197 2271 ntAPPRIS P3 TSL 1 (best) BASIC17.01■□□□□ 0.31
Lmx1bO88609 Akr1a1-201ENSMUST00000030455 1420 ntAPPRIS P1 TSL 1 (best) BASIC17.01■□□□□ 0.31
Retrieved 100 of 76,532 protein–RNA pairs in 45.6 ms