Protein–RNA interactions for Protein: A0A075B5Z8

Trav6-1, T cell receptor alpha variable 6-1 (Fragment), mousemouse

Predictions only

Length 112 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Trav6-1A0A075B5Z8 Rarb-207ENSMUST00000225921 2756 ntBASIC15.19■□□□□ 0.02
Trav6-1A0A075B5Z8 3010003L21Rik-201ENSMUST00000047953 1729 ntTSL 5 BASIC15.19■□□□□ 0.02
Trav6-1A0A075B5Z8 Tgfb1-201ENSMUST00000002678 2175 ntAPPRIS P1 TSL 1 (best) BASIC15.19■□□□□ 0.02
Trav6-1A0A075B5Z8 Pqlc1-207ENSMUST00000140594 2356 ntAPPRIS P3 TSL 1 (best) BASIC15.19■□□□□ 0.02
Trav6-1A0A075B5Z8 Gm28523-201ENSMUST00000190040 1588 ntTSL 1 (best) BASIC15.19■□□□□ 0.02
Trav6-1A0A075B5Z8 Rer1-201ENSMUST00000030914 1596 ntAPPRIS P1 TSL 1 (best) BASIC15.19■□□□□ 0.02
Trav6-1A0A075B5Z8 Tulp1-201ENSMUST00000041819 2017 ntAPPRIS P1 TSL 1 (best) BASIC15.19■□□□□ 0.02
Trav6-1A0A075B5Z8 Arid1a-202ENSMUST00000105897 8175 ntAPPRIS P2 TSL 5 BASIC15.19■□□□□ 0.02
Trav6-1A0A075B5Z8 Anks1b-217ENSMUST00000182550 1868 ntTSL 5 BASIC15.18■□□□□ 0.02
Trav6-1A0A075B5Z8 Cyth2-202ENSMUST00000107729 2519 ntAPPRIS P2 TSL 1 (best) BASIC15.18■□□□□ 0.02
Trav6-1A0A075B5Z8 Gm9828-202ENSMUST00000126622 1446 ntTSL 3 BASIC15.18■□□□□ 0.02
Trav6-1A0A075B5Z8 Ankle2-202ENSMUST00000086674 5025 ntAPPRIS ALT2 TSL 5 BASIC15.18■□□□□ 0.02
Trav6-1A0A075B5Z8 Mpp3-203ENSMUST00000107167 2066 ntTSL 1 (best) BASIC15.18■□□□□ 0.02
Trav6-1A0A075B5Z8 Matk-205ENSMUST00000121205 1841 ntAPPRIS ALT2 TSL 1 (best) BASIC15.18■□□□□ 0.02
Trav6-1A0A075B5Z8 Actl6a-201ENSMUST00000029214 2010 ntAPPRIS P1 TSL 1 (best) BASIC15.18■□□□□ 0.02
Trav6-1A0A075B5Z8 Gm15546-201ENSMUST00000122095 826 ntBASIC15.18■□□□□ 0.02
Trav6-1A0A075B5Z8 Mdfi-201ENSMUST00000035375 1371 ntAPPRIS P1 TSL 1 (best) BASIC15.18■□□□□ 0.02
Trav6-1A0A075B5Z8 Pacsin3-203ENSMUST00000111349 1993 ntAPPRIS P1 TSL 1 (best) BASIC15.18■□□□□ 0.02
Trav6-1A0A075B5Z8 Ppp1r3g-203ENSMUST00000225537 2389 ntAPPRIS P1 BASIC15.18■□□□□ 0.02
Trav6-1A0A075B5Z8 Map4k4-201ENSMUST00000163854 5782 ntAPPRIS ALT2 TSL 5 BASIC15.18■□□□□ 0.02
Trav6-1A0A075B5Z8 Gxylt1-201ENSMUST00000049484 6611 ntAPPRIS P3 TSL 1 (best) BASIC15.17■□□□□ 0.02
Trav6-1A0A075B5Z8 Cnn3-201ENSMUST00000029773 2049 ntAPPRIS P1 TSL 1 (best) BASIC15.17■□□□□ 0.02
Trav6-1A0A075B5Z8 Gorasp2-202ENSMUST00000112201 2417 ntAPPRIS ALT2 TSL 1 (best) BASIC15.17■□□□□ 0.02
Trav6-1A0A075B5Z8 Cckbr-201ENSMUST00000033189 2573 ntAPPRIS P1 TSL 1 (best) BASIC15.17■□□□□ 0.02
Trav6-1A0A075B5Z8 Gm28417-201ENSMUST00000185218 785 ntTSL 3 BASIC15.17■□□□□ 0.02
Trav6-1A0A075B5Z8 Serbp1-212ENSMUST00000204294 717 ntTSL 5 BASIC15.17■□□□□ 0.02
Trav6-1A0A075B5Z8 Gm44832-201ENSMUST00000208849 2303 ntBASIC15.17■□□□□ 0.02
Trav6-1A0A075B5Z8 AC123834.2-201ENSMUST00000224038 2340 ntBASIC15.17■□□□□ 0.02
Trav6-1A0A075B5Z8 Tgif1-209ENSMUST00000166395 1714 ntTSL 1 (best) BASIC15.17■□□□□ 0.02
Trav6-1A0A075B5Z8 Pip5k1c-202ENSMUST00000105327 2551 ntAPPRIS P3 TSL 1 (best) BASIC15.17■□□□□ 0.02
Trav6-1A0A075B5Z8 Rps6ka3-201ENSMUST00000033671 7244 ntAPPRIS P1 TSL 1 (best) BASIC15.17■□□□□ 0.02
Trav6-1A0A075B5Z8 Rhobtb3-201ENSMUST00000022078 4980 ntAPPRIS P1 TSL 1 (best) BASIC15.16■□□□□ 0.02
Trav6-1A0A075B5Z8 Foxj1-201ENSMUST00000036215 2623 ntAPPRIS P1 TSL 1 (best) BASIC15.16■□□□□ 0.02
Trav6-1A0A075B5Z8 Gm43213-201ENSMUST00000151866 1790 ntBASIC15.16■□□□□ 0.02
Trav6-1A0A075B5Z8 Eid2b-201ENSMUST00000094651 1751 ntAPPRIS P1 BASIC15.16■□□□□ 0.02
Trav6-1A0A075B5Z8 Alg1-201ENSMUST00000049207 1669 ntAPPRIS ALT2 TSL 2 BASIC15.16■□□□□ 0.02
Trav6-1A0A075B5Z8 Ctbp2-201ENSMUST00000033269 2321 ntAPPRIS P1 TSL 1 (best) BASIC15.16■□□□□ 0.02
Trav6-1A0A075B5Z8 Osbpl1a-203ENSMUST00000118313 2893 ntTSL 1 (best) BASIC15.16■□□□□ 0.02
Trav6-1A0A075B5Z8 Adgrv1-211ENSMUST00000146749 1592 ntTSL 1 (best) BASIC15.16■□□□□ 0.02
Trav6-1A0A075B5Z8 4930412F12Rik-201ENSMUST00000211700 1471 ntBASIC15.16■□□□□ 0.02
Trav6-1A0A075B5Z8 Fbxw5-201ENSMUST00000015239 2388 ntAPPRIS P1 TSL 1 (best) BASIC15.16■□□□□ 0.02
Trav6-1A0A075B5Z8 Tekt5-201ENSMUST00000043415 1803 ntAPPRIS ALT2 TSL 1 (best) BASIC15.16■□□□□ 0.02
Trav6-1A0A075B5Z8 Gm10941-201ENSMUST00000105408 708 ntTSL 1 (best) BASIC15.16■□□□□ 0.02
Trav6-1A0A075B5Z8 Kras-202ENSMUST00000111710 1194 ntTSL 5 BASIC15.16■□□□□ 0.02
Trav6-1A0A075B5Z8 Gm12660-201ENSMUST00000123764 664 ntTSL 3 BASIC15.16■□□□□ 0.02
Trav6-1A0A075B5Z8 Cyb5r4-201ENSMUST00000168529 2644 ntAPPRIS P1 TSL 1 (best) BASIC15.16■□□□□ 0.02
Trav6-1A0A075B5Z8 Foxo3-204ENSMUST00000175881 2535 ntAPPRIS P1 TSL 1 (best) BASIC15.16■□□□□ 0.02
Trav6-1A0A075B5Z8 Klhl2-201ENSMUST00000034017 3412 ntAPPRIS P2 TSL 1 (best) BASIC15.16■□□□□ 0.02
Trav6-1A0A075B5Z8 Bicdl1-203ENSMUST00000118576 1874 ntTSL 1 (best) BASIC15.16■□□□□ 0.02
Trav6-1A0A075B5Z8 Nadk2-201ENSMUST00000067760 3731 ntAPPRIS P5 TSL 5 BASIC15.16■□□□□ 0.02
Trav6-1A0A075B5Z8 Nptx1-201ENSMUST00000026670 5217 ntAPPRIS P1 TSL 1 (best) BASIC15.16■□□□□ 0.02
Trav6-1A0A075B5Z8 Unc119-201ENSMUST00000002127 1329 ntAPPRIS P1 TSL 1 (best) BASIC15.16■□□□□ 0.02
Trav6-1A0A075B5Z8 Rnf44-208ENSMUST00000128257 1689 ntTSL 5 BASIC15.16■□□□□ 0.02
Trav6-1A0A075B5Z8 Gm3020-202ENSMUST00000167430 1933 ntAPPRIS P1 TSL 1 (best) BASIC15.15■□□□□ 0.02
Trav6-1A0A075B5Z8 Gm10409-201ENSMUST00000170123 1933 ntAPPRIS P1 TSL 1 (best) BASIC15.15■□□□□ 0.02
Trav6-1A0A075B5Z8 Pycr2-201ENSMUST00000027802 1580 ntAPPRIS P1 TSL 1 (best) BASIC15.15■□□□□ 0.02
Trav6-1A0A075B5Z8 Sox30-201ENSMUST00000049038 2997 ntAPPRIS P1 TSL 1 (best) BASIC15.15■□□□□ 0.02
Trav6-1A0A075B5Z8 Kat14-201ENSMUST00000028911 3801 ntAPPRIS P1 TSL 1 (best) BASIC15.15■□□□□ 0.02
Trav6-1A0A075B5Z8 Ppa1-201ENSMUST00000020286 1364 ntAPPRIS P1 TSL 1 (best) BASIC15.15■□□□□ 0.02
Trav6-1A0A075B5Z8 Gpc3-202ENSMUST00000114857 1880 ntTSL 1 (best) BASIC15.15■□□□□ 0.02
Trav6-1A0A075B5Z8 4930539J05Rik-202ENSMUST00000182865 511 ntTSL 2 BASIC15.15■□□□□ 0.02
Trav6-1A0A075B5Z8 Gm9959-201ENSMUST00000068277 390 ntBASIC15.15■□□□□ 0.02
Trav6-1A0A075B5Z8 Rbm15b-201ENSMUST00000055843 6511 ntAPPRIS P1 BASIC15.15■□□□□ 0.02
Trav6-1A0A075B5Z8 Sec61a2-202ENSMUST00000102981 2448 ntAPPRIS P1 TSL 1 (best) BASIC15.15■□□□□ 0.02
Trav6-1A0A075B5Z8 Prdm8-201ENSMUST00000112959 4553 ntAPPRIS P1 TSL 1 (best) BASIC15.15■□□□□ 0.02
Trav6-1A0A075B5Z8 Gm26689-201ENSMUST00000180927 1818 ntTSL 1 (best) BASIC15.15■□□□□ 0.02
Trav6-1A0A075B5Z8 Gm26553-201ENSMUST00000181531 1818 ntTSL 1 (best) BASIC15.15■□□□□ 0.02
Trav6-1A0A075B5Z8 Gm43042-201ENSMUST00000198676 1820 ntTSL 5 BASIC15.15■□□□□ 0.02
Trav6-1A0A075B5Z8 Marcks-201ENSMUST00000092584 4048 ntAPPRIS P1 TSL 1 (best) BASIC15.14■□□□□ 0.01
Trav6-1A0A075B5Z8 Blcap-201ENSMUST00000088494 2108 ntAPPRIS P1 TSL 1 (best) BASIC15.14■□□□□ 0.01
Trav6-1A0A075B5Z8 0610040J01Rik-201ENSMUST00000081747 2008 ntAPPRIS P1 TSL 1 (best) BASIC15.14■□□□□ 0.01
Trav6-1A0A075B5Z8 Ulk2-201ENSMUST00000004920 5743 ntAPPRIS P1 TSL 1 (best) BASIC15.14■□□□□ 0.01
Trav6-1A0A075B5Z8 Sigmar1-202ENSMUST00000071561 1547 ntTSL 1 (best) BASIC15.14■□□□□ 0.01
Trav6-1A0A075B5Z8 Creld1-201ENSMUST00000032422 2306 ntAPPRIS P1 TSL 1 (best) BASIC15.14■□□□□ 0.01
Trav6-1A0A075B5Z8 Prodh-206ENSMUST00000139861 677 ntTSL 1 (best) BASIC15.14■□□□□ 0.01
Trav6-1A0A075B5Z8 Zfp963-202ENSMUST00000154063 640 ntTSL 3 BASIC15.14■□□□□ 0.01
Trav6-1A0A075B5Z8 Kmt5b-201ENSMUST00000005518 1283 ntAPPRIS ALT2 TSL 5 BASIC15.14■□□□□ 0.01
Trav6-1A0A075B5Z8 Exog-202ENSMUST00000164213 2627 ntTSL 1 (best) BASIC15.14■□□□□ 0.01
Trav6-1A0A075B5Z8 Frmd3-202ENSMUST00000098006 2205 ntAPPRIS ALT2 TSL 1 (best) BASIC15.14■□□□□ 0.01
Trav6-1A0A075B5Z8 Hpca-204ENSMUST00000116444 1847 ntAPPRIS P1 TSL 5 BASIC15.14■□□□□ 0.01
Trav6-1A0A075B5Z8 3830408C21Rik-206ENSMUST00000225489 1810 ntBASIC15.14■□□□□ 0.01
Trav6-1A0A075B5Z8 Nat14-204ENSMUST00000207687 1415 ntAPPRIS P1 TSL 1 (best) BASIC15.14■□□□□ 0.01
Trav6-1A0A075B5Z8 Trim67-201ENSMUST00000041106 5694 ntAPPRIS P1 TSL 1 (best) BASIC15.14■□□□□ 0.01
Trav6-1A0A075B5Z8 Slc10a4-201ENSMUST00000031127 2106 ntAPPRIS P1 TSL 1 (best) BASIC15.14■□□□□ 0.01
Trav6-1A0A075B5Z8 Atf5-202ENSMUST00000107893 1735 ntAPPRIS P1 TSL 1 (best) BASIC15.14■□□□□ 0.01
Trav6-1A0A075B5Z8 Brpf1-204ENSMUST00000113122 4773 ntAPPRIS ALT2 TSL 5 BASIC15.14■□□□□ 0.01
Trav6-1A0A075B5Z8 Epn1-202ENSMUST00000098845 2565 ntAPPRIS P2 TSL 1 (best) BASIC15.14■□□□□ 0.01
Trav6-1A0A075B5Z8 Mgll-202ENSMUST00000113581 1308 ntTSL 5 BASIC15.14■□□□□ 0.01
Trav6-1A0A075B5Z8 Vat1-201ENSMUST00000040430 2766 ntAPPRIS P1 TSL 1 (best) BASIC15.13■□□□□ 0.01
Trav6-1A0A075B5Z8 Larp1b-202ENSMUST00000048490 2354 ntAPPRIS P2 TSL 1 (best) BASIC15.13■□□□□ 0.01
Trav6-1A0A075B5Z8 Cldn23-201ENSMUST00000060128 1848 ntAPPRIS P1 BASIC15.13■□□□□ 0.01
Trav6-1A0A075B5Z8 Hoxa1-202ENSMUST00000120363 2043 ntTSL 1 (best) BASIC15.13■□□□□ 0.01
Trav6-1A0A075B5Z8 D630036H23Rik-201ENSMUST00000171007 940 ntAPPRIS P1 BASIC15.13■□□□□ 0.01
Trav6-1A0A075B5Z8 Ddx39b-203ENSMUST00000173731 2848 ntAPPRIS P1 TSL 1 (best) BASIC15.13■□□□□ 0.01
Trav6-1A0A075B5Z8 Nr1h2-202ENSMUST00000107910 1948 ntAPPRIS ALT2 TSL 1 (best) BASIC15.13■□□□□ 0.01
Trav6-1A0A075B5Z8 Cdca4-202ENSMUST00000220899 1994 ntAPPRIS P1 TSL 1 (best) BASIC15.13■□□□□ 0.01
Trav6-1A0A075B5Z8 Smyd2-201ENSMUST00000027897 1680 ntAPPRIS P1 TSL 1 (best) BASIC15.12■□□□□ 0.01
Trav6-1A0A075B5Z8 Col9a3-203ENSMUST00000132527 3046 ntAPPRIS P1 TSL 5 BASIC15.12■□□□□ 0.01
Trav6-1A0A075B5Z8 Gm42939-201ENSMUST00000197514 2205 ntBASIC15.12■□□□□ 0.01
Trav6-1A0A075B5Z8 Chmp6-201ENSMUST00000026434 1557 ntAPPRIS P1 TSL 1 (best) BASIC15.12■□□□□ 0.01
Retrieved 100 of 76,532 protein–RNA pairs in 18.8 ms