Protein–RNA interactions for Protein: Q9R1C7

Prpf40a, Pre-mRNA-processing factor 40 homolog A, mousemouse

Known RBP Predictions only

Length 953 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Prpf40aQ9R1C7 Sra1-201ENSMUST00000001415 2061 ntAPPRIS P4 TSL 5 BASIC20.8■□□□□ 0.92
Prpf40aQ9R1C7 Nr2f1-201ENSMUST00000091458 3207 ntAPPRIS P1 TSL 1 (best) BASIC20.8■□□□□ 0.92
Prpf40aQ9R1C7 Rnaseh1-201ENSMUST00000020959 1455 ntAPPRIS P1 TSL 1 (best) BASIC20.8■□□□□ 0.92
Prpf40aQ9R1C7 Donson-202ENSMUST00000114031 2147 ntAPPRIS ALT2 TSL 5 BASIC20.8■□□□□ 0.92
Prpf40aQ9R1C7 Gas2-203ENSMUST00000107591 2232 ntAPPRIS P1 TSL 1 (best) BASIC20.8■□□□□ 0.92
Prpf40aQ9R1C7 Ttc39a-203ENSMUST00000106619 1778 ntTSL 1 (best) BASIC20.8■□□□□ 0.92
Prpf40aQ9R1C7 Tal1-204ENSMUST00000162489 2894 ntAPPRIS P1 TSL 1 (best) BASIC20.79■□□□□ 0.92
Prpf40aQ9R1C7 E2f1-202ENSMUST00000103145 2732 ntAPPRIS P3 TSL 1 (best) BASIC20.79■□□□□ 0.92
Prpf40aQ9R1C7 Gramd1a-201ENSMUST00000001280 2713 ntAPPRIS P2 TSL 1 (best) BASIC20.79■□□□□ 0.92
Prpf40aQ9R1C7 Cd24a-201ENSMUST00000058714 1816 ntAPPRIS P2 TSL 1 (best) BASIC20.79■□□□□ 0.92
Prpf40aQ9R1C7 Fbxl21-202ENSMUST00000121095 798 ntTSL 1 (best) BASIC20.79■□□□□ 0.92
Prpf40aQ9R1C7 Plac9b-203ENSMUST00000184142 1040 ntAPPRIS P1 TSL 1 (best) BASIC20.79■□□□□ 0.92
Prpf40aQ9R1C7 Slc37a3-211ENSMUST00000202749 434 ntTSL 5 BASIC20.79■□□□□ 0.92
Prpf40aQ9R1C7 Sdf2l1-201ENSMUST00000023453 1108 ntAPPRIS P1 TSL 1 (best) BASIC20.79■□□□□ 0.92
Prpf40aQ9R1C7 Ferd3l-201ENSMUST00000061035 886 ntAPPRIS P1 BASIC20.79■□□□□ 0.92
Prpf40aQ9R1C7 Dlg1-202ENSMUST00000064477 4663 ntAPPRIS P3 TSL 1 (best) BASIC20.79■□□□□ 0.92
Prpf40aQ9R1C7 Ank1-207ENSMUST00000118733 8201 ntAPPRIS ALT2 TSL 1 (best) BASIC20.79■□□□□ 0.92
Prpf40aQ9R1C7 Gm3667-201ENSMUST00000171906 2053 ntAPPRIS P1 TSL 5 BASIC20.79■□□□□ 0.92
Prpf40aQ9R1C7 Prss16-201ENSMUST00000006341 2155 ntAPPRIS P1 TSL 1 (best) BASIC20.79■□□□□ 0.92
Prpf40aQ9R1C7 Nus1-201ENSMUST00000023830 4605 ntAPPRIS P1 TSL 1 (best) BASIC20.79■□□□□ 0.92
Prpf40aQ9R1C7 Grtp1-207ENSMUST00000211128 1416 ntTSL 1 (best) BASIC20.78■□□□□ 0.92
Prpf40aQ9R1C7 Memo1-201ENSMUST00000078459 1513 ntAPPRIS P1 TSL 1 (best) BASIC20.78■□□□□ 0.92
Prpf40aQ9R1C7 Tril-201ENSMUST00000127748 5363 ntAPPRIS P1 BASIC20.78■□□□□ 0.92
Prpf40aQ9R1C7 Hoxa11os-201ENSMUST00000134512 1839 ntTSL 1 (best) BASIC20.78■□□□□ 0.92
Prpf40aQ9R1C7 Eefsec-206ENSMUST00000205179 2208 ntTSL 1 (best) BASIC20.78■□□□□ 0.92
Prpf40aQ9R1C7 Fblim1-202ENSMUST00000105784 3036 ntAPPRIS P1 TSL 5 BASIC20.78■□□□□ 0.92
Prpf40aQ9R1C7 Chst3-202ENSMUST00000135158 6108 ntAPPRIS P2 TSL 5 BASIC20.78■□□□□ 0.92
Prpf40aQ9R1C7 Antxr1-201ENSMUST00000042025 5253 ntAPPRIS P2 TSL 1 (best) BASIC20.78■□□□□ 0.92
Prpf40aQ9R1C7 Gm12524-201ENSMUST00000143109 1583 ntTSL 1 (best) BASIC20.78■□□□□ 0.92
Prpf40aQ9R1C7 Mtmr1-202ENSMUST00000114601 4640 ntAPPRIS ALT2 TSL 5 BASIC20.78■□□□□ 0.92
Prpf40aQ9R1C7 AV026068-208ENSMUST00000189098 286 ntTSL 5 BASIC20.78■□□□□ 0.92
Prpf40aQ9R1C7 Sept7-201ENSMUST00000115272 2533 ntAPPRIS ALT1 TSL 5 BASIC20.78■□□□□ 0.92
Prpf40aQ9R1C7 Trim72-202ENSMUST00000106248 2134 ntAPPRIS P1 TSL 5 BASIC20.78■□□□□ 0.92
Prpf40aQ9R1C7 Zswim8-208ENSMUST00000224751 5951 ntAPPRIS ALT2 BASIC20.78■□□□□ 0.92
Prpf40aQ9R1C7 0610038B21Rik-202ENSMUST00000184762 1524 ntBASIC20.78■□□□□ 0.92
Prpf40aQ9R1C7 Ankle2-202ENSMUST00000086674 5025 ntAPPRIS ALT2 TSL 5 BASIC20.78■□□□□ 0.92
Prpf40aQ9R1C7 Tmem121b-201ENSMUST00000178687 4869 ntAPPRIS P1 BASIC20.77■□□□□ 0.92
Prpf40aQ9R1C7 Larp1-201ENSMUST00000071487 6614 ntAPPRIS ALT2 TSL 5 BASIC20.77■□□□□ 0.92
Prpf40aQ9R1C7 Mall-201ENSMUST00000028856 2006 ntAPPRIS P1 TSL 1 (best) BASIC20.77■□□□□ 0.92
Prpf40aQ9R1C7 Gm45015-201ENSMUST00000207943 1364 ntAPPRIS P1 TSL 5 BASIC20.77■□□□□ 0.92
Prpf40aQ9R1C7 Rab5a-201ENSMUST00000017975 2357 ntAPPRIS P1 TSL 1 (best) BASIC20.77■□□□□ 0.92
Prpf40aQ9R1C7 Sumo3-209ENSMUST00000174113 512 ntAPPRIS P1 TSL 2 BASIC20.77■□□□□ 0.92
Prpf40aQ9R1C7 Tspan17-202ENSMUST00000099503 822 ntAPPRIS ALT1 TSL 5 BASIC20.77■□□□□ 0.92
Prpf40aQ9R1C7 Csnk1a1-210ENSMUST00000170862 2259 ntAPPRIS ALT1 TSL 5 BASIC20.77■□□□□ 0.92
Prpf40aQ9R1C7 Aire-203ENSMUST00000105396 1749 ntAPPRIS ALT2 TSL 1 (best) BASIC20.77■□□□□ 0.92
Prpf40aQ9R1C7 Aire-214ENSMUST00000154374 1712 ntAPPRIS ALT2 TSL 1 (best) BASIC20.77■□□□□ 0.92
Prpf40aQ9R1C7 Aire-215ENSMUST00000155021 1737 ntAPPRIS ALT2 TSL 1 (best) BASIC20.77■□□□□ 0.92
Prpf40aQ9R1C7 Vapa-201ENSMUST00000024897 1640 ntAPPRIS P1 TSL 1 (best) BASIC20.77■□□□□ 0.92
Prpf40aQ9R1C7 Stoml1-201ENSMUST00000034883 1984 ntAPPRIS P1 TSL 1 (best) BASIC20.77■□□□□ 0.92
Prpf40aQ9R1C7 Cox18-202ENSMUST00000118816 1307 ntAPPRIS ALT2 TSL 1 (best) BASIC20.77■□□□□ 0.91
Prpf40aQ9R1C7 Sept4-206ENSMUST00000122067 1303 ntTSL 1 (best) BASIC20.77■□□□□ 0.91
Prpf40aQ9R1C7 Itsn2-215ENSMUST00000220311 6080 ntAPPRIS ALT2 TSL 1 (best) BASIC20.77■□□□□ 0.91
Prpf40aQ9R1C7 Vps26a-201ENSMUST00000092473 2712 ntTSL 1 (best) BASIC20.77■□□□□ 0.91
Prpf40aQ9R1C7 4732440D04Rik-203ENSMUST00000191825 5428 ntBASIC20.76■□□□□ 0.91
Prpf40aQ9R1C7 Acot2-201ENSMUST00000021649 2196 ntAPPRIS P1 TSL 1 (best) BASIC20.76■□□□□ 0.91
Prpf40aQ9R1C7 Hyal2-207ENSMUST00000195752 2062 ntAPPRIS P2 TSL 5 BASIC20.76■□□□□ 0.91
Prpf40aQ9R1C7 Actrt3-201ENSMUST00000047630 1961 ntAPPRIS P1 TSL 1 (best) BASIC20.76■□□□□ 0.91
Prpf40aQ9R1C7 2810474O19Rik-201ENSMUST00000046689 6066 ntAPPRIS P2 TSL 1 (best) BASIC20.76■□□□□ 0.91
Prpf40aQ9R1C7 Nrxn2-204ENSMUST00000113461 5505 ntAPPRIS ALT2 TSL 5 BASIC20.76■□□□□ 0.91
Prpf40aQ9R1C7 Gm14281-201ENSMUST00000121700 1294 ntBASIC20.76■□□□□ 0.91
Prpf40aQ9R1C7 Gm26881-201ENSMUST00000180426 593 ntTSL 1 (best) BASIC20.76■□□□□ 0.91
Prpf40aQ9R1C7 0610010K14Rik-202ENSMUST00000021181 779 ntTSL 1 (best) BASIC20.76■□□□□ 0.91
Prpf40aQ9R1C7 Tmem147-201ENSMUST00000006478 870 ntAPPRIS P1 TSL 1 (best) BASIC20.76■□□□□ 0.91
Prpf40aQ9R1C7 Kcnq2-203ENSMUST00000081528 2382 ntTSL 1 (best) BASIC20.76■□□□□ 0.91
Prpf40aQ9R1C7 Srsf4-202ENSMUST00000053819 2257 ntAPPRIS P1 TSL 1 (best) BASIC20.76■□□□□ 0.91
Prpf40aQ9R1C7 Hoxb3os-201ENSMUST00000131275 2315 ntTSL 3 BASIC20.76■□□□□ 0.91
Prpf40aQ9R1C7 Cldn23-201ENSMUST00000060128 1848 ntAPPRIS P1 BASIC20.76■□□□□ 0.91
Prpf40aQ9R1C7 Rcor3-203ENSMUST00000192128 1578 ntAPPRIS P3 TSL 1 (best) BASIC20.76■□□□□ 0.91
Prpf40aQ9R1C7 Kis2-201ENSMUST00000133214 1717 ntTSL 1 (best) BASIC20.75■□□□□ 0.91
Prpf40aQ9R1C7 Foxa2-201ENSMUST00000047315 2128 ntAPPRIS P3 TSL 1 (best) BASIC20.75■□□□□ 0.91
Prpf40aQ9R1C7 Sumf1-201ENSMUST00000032191 2593 ntAPPRIS P2 TSL 1 (best) BASIC20.75■□□□□ 0.91
Prpf40aQ9R1C7 Pqlc3-201ENSMUST00000054536 1928 ntAPPRIS P1 TSL 1 (best) BASIC20.75■□□□□ 0.91
Prpf40aQ9R1C7 Stum-202ENSMUST00000179826 601 ntAPPRIS ALT1 TSL 5 BASIC20.75■□□□□ 0.91
Prpf40aQ9R1C7 Gm45168-202ENSMUST00000206461 1069 ntTSL 5 BASIC20.75■□□□□ 0.91
Prpf40aQ9R1C7 Tifa-201ENSMUST00000054483 2245 ntAPPRIS P1 TSL 1 (best) BASIC20.75■□□□□ 0.91
Prpf40aQ9R1C7 Gnpda1-201ENSMUST00000063814 2289 ntAPPRIS P1 TSL 1 (best) BASIC20.75■□□□□ 0.91
Prpf40aQ9R1C7 Zdhhc14-201ENSMUST00000089185 3115 ntAPPRIS P1 TSL 1 (best) BASIC20.75■□□□□ 0.91
Prpf40aQ9R1C7 AW047730-202ENSMUST00000181406 2579 ntTSL 1 (best) BASIC20.75■□□□□ 0.91
Prpf40aQ9R1C7 Itsn1-206ENSMUST00000113999 5393 ntTSL 5 BASIC20.75■□□□□ 0.91
Prpf40aQ9R1C7 Vim-206ENSMUST00000193675 1777 ntAPPRIS ALT2 TSL 5 BASIC20.74■□□□□ 0.91
Prpf40aQ9R1C7 Trim72-201ENSMUST00000081042 1755 ntAPPRIS P1 TSL 1 (best) BASIC20.74■□□□□ 0.91
Prpf40aQ9R1C7 Tmem179-201ENSMUST00000066791 2380 ntAPPRIS P1 TSL 1 (best) BASIC20.74■□□□□ 0.91
Prpf40aQ9R1C7 Tmem11-203ENSMUST00000168218 1511 ntTSL 2 BASIC20.74■□□□□ 0.91
Prpf40aQ9R1C7 Matk-205ENSMUST00000121205 1841 ntAPPRIS ALT2 TSL 1 (best) BASIC20.74■□□□□ 0.91
Prpf40aQ9R1C7 Tcp11-201ENSMUST00000042692 1984 ntAPPRIS P3 TSL 1 (best) BASIC20.74■□□□□ 0.91
Prpf40aQ9R1C7 Zbtb7c-202ENSMUST00000167921 2147 ntAPPRIS P1 TSL 1 (best) BASIC20.74■□□□□ 0.91
Prpf40aQ9R1C7 Irx3-202ENSMUST00000175795 2748 ntAPPRIS ALT2 TSL 1 (best) BASIC20.74■□□□□ 0.91
Prpf40aQ9R1C7 Wdfy1-202ENSMUST00000113510 704 ntTSL 1 (best) BASIC20.74■□□□□ 0.91
Prpf40aQ9R1C7 Wdfy1-203ENSMUST00000113511 704 ntTSL 5 BASIC20.74■□□□□ 0.91
Prpf40aQ9R1C7 Pigt-202ENSMUST00000117066 1712 ntAPPRIS ALT2 TSL 1 (best) BASIC20.74■□□□□ 0.91
Prpf40aQ9R1C7 Sumo2-205ENSMUST00000121185 911 ntTSL 3 BASIC20.74■□□□□ 0.91
Prpf40aQ9R1C7 Mrpl3-205ENSMUST00000149243 2309 ntTSL 1 (best) BASIC20.74■□□□□ 0.91
Prpf40aQ9R1C7 Gm13830-204ENSMUST00000149609 1851 ntTSL 1 (best) BASIC20.74■□□□□ 0.91
Prpf40aQ9R1C7 M5C1000I18Rik-202ENSMUST00000186205 1414 ntTSL 1 (best) BASIC20.74■□□□□ 0.91
Prpf40aQ9R1C7 6430500D05Rik-201ENSMUST00000198286 1176 ntBASIC20.74■□□□□ 0.91
Prpf40aQ9R1C7 AC122828.1-201ENSMUST00000220785 489 ntTSL 3 BASIC20.74■□□□□ 0.91
Prpf40aQ9R1C7 AC124603.1-201ENSMUST00000223843 308 ntBASIC20.74■□□□□ 0.91
Prpf40aQ9R1C7 H2-Ke6-201ENSMUST00000045467 965 ntAPPRIS P1 TSL 1 (best) BASIC20.74■□□□□ 0.91
Prpf40aQ9R1C7 Wdfy1-201ENSMUST00000048820 717 ntTSL 1 (best) BASIC20.74■□□□□ 0.91
Prpf40aQ9R1C7 Tmie-201ENSMUST00000050958 2802 ntAPPRIS P1 TSL 1 (best) BASIC20.74■□□□□ 0.91
Retrieved 100 of 76,532 protein–RNA pairs in 18.8 ms