Protein–RNA interactions for Protein: Q9ERG0

Lima1, LIM domain and actin-binding protein 1, mousemouse

Known RBP Predictions only

Length 753 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Lima1Q9ERG0 Mprip-201ENSMUST00000066330 7765 ntAPPRIS ALT2 TSL 5 BASIC18.69■□□□□ 0.58
Lima1Q9ERG0 Gm5540-201ENSMUST00000131852 1848 ntBASIC18.69■□□□□ 0.58
Lima1Q9ERG0 Nmnat3-202ENSMUST00000112937 1898 ntTSL 1 (best) BASIC18.69■□□□□ 0.58
Lima1Q9ERG0 Ttc9-202ENSMUST00000218362 4754 ntAPPRIS P1 TSL 1 (best) BASIC18.69■□□□□ 0.58
Lima1Q9ERG0 Itsn1-206ENSMUST00000113999 5393 ntTSL 5 BASIC18.69■□□□□ 0.58
Lima1Q9ERG0 Azi2-207ENSMUST00000134433 2499 ntTSL 1 (best) BASIC18.68■□□□□ 0.58
Lima1Q9ERG0 Anks6-202ENSMUST00000107747 3980 ntTSL 1 (best) BASIC18.68■□□□□ 0.58
Lima1Q9ERG0 Nsun2-202ENSMUST00000109699 2834 ntAPPRIS P2 TSL 1 (best) BASIC18.68■□□□□ 0.58
Lima1Q9ERG0 Syce3-201ENSMUST00000109314 448 ntAPPRIS P1 TSL 1 (best) BASIC18.68■□□□□ 0.58
Lima1Q9ERG0 Pgam5-202ENSMUST00000112505 2098 ntAPPRIS ALT1 TSL 1 (best) BASIC18.68■□□□□ 0.58
Lima1Q9ERG0 Pparg-202ENSMUST00000171644 2125 ntAPPRIS P1 TSL 1 (best) BASIC18.68■□□□□ 0.58
Lima1Q9ERG0 Htra2-202ENSMUST00000113962 1305 ntTSL 5 BASIC18.68■□□□□ 0.58
Lima1Q9ERG0 Ddx39b-203ENSMUST00000173731 2848 ntAPPRIS P1 TSL 1 (best) BASIC18.68■□□□□ 0.58
Lima1Q9ERG0 Rhno1-203ENSMUST00000112152 2015 ntAPPRIS P1 TSL 1 (best) BASIC18.67■□□□□ 0.58
Lima1Q9ERG0 Vav2-201ENSMUST00000056176 5221 ntAPPRIS P1 TSL 1 (best) BASIC18.67■□□□□ 0.58
Lima1Q9ERG0 Cnot11-201ENSMUST00000003219 3162 ntAPPRIS P1 TSL 1 (best) BASIC18.67■□□□□ 0.58
Lima1Q9ERG0 Hoxa5-201ENSMUST00000048794 1877 ntAPPRIS P1 TSL 1 (best) BASIC18.67■□□□□ 0.58
Lima1Q9ERG0 Nlgn2-202ENSMUST00000108634 5568 ntAPPRIS P1 TSL 1 (best) BASIC18.67■□□□□ 0.58
Lima1Q9ERG0 Ppp1r3f-201ENSMUST00000115742 3066 ntAPPRIS P3 TSL 1 (best) BASIC18.67■□□□□ 0.58
Lima1Q9ERG0 Ankrd9-201ENSMUST00000043459 1706 ntAPPRIS P2 TSL 1 (best) BASIC18.67■□□□□ 0.58
Lima1Q9ERG0 Tor3a-208ENSMUST00000190607 453 ntTSL 3 BASIC18.67■□□□□ 0.58
Lima1Q9ERG0 Mapkapk3-208ENSMUST00000192054 944 ntTSL 1 (best) BASIC18.67■□□□□ 0.58
Lima1Q9ERG0 Gm9207-201ENSMUST00000198773 1115 ntBASIC18.67■□□□□ 0.58
Lima1Q9ERG0 Bcl2l10-201ENSMUST00000034709 1220 ntAPPRIS P1 TSL 1 (best) BASIC18.67■□□□□ 0.58
Lima1Q9ERG0 Pxdc1-202ENSMUST00000053459 2684 ntAPPRIS P1 TSL 1 (best) BASIC18.67■□□□□ 0.58
Lima1Q9ERG0 Sox30-201ENSMUST00000049038 2997 ntAPPRIS P1 TSL 1 (best) BASIC18.67■□□□□ 0.58
Lima1Q9ERG0 Cyth2-202ENSMUST00000107729 2519 ntAPPRIS P2 TSL 1 (best) BASIC18.67■□□□□ 0.58
Lima1Q9ERG0 Med14-201ENSMUST00000076016 2561 ntAPPRIS ALT2 TSL 1 (best) BASIC18.67■□□□□ 0.58
Lima1Q9ERG0 Rasl10b-202ENSMUST00000108140 3156 ntAPPRIS P1 TSL 2 BASIC18.67■□□□□ 0.58
Lima1Q9ERG0 A730056A06Rik-201ENSMUST00000181299 2689 ntTSL 1 (best) BASIC18.67■□□□□ 0.58
Lima1Q9ERG0 Dixdc1-207ENSMUST00000121634 2420 ntTSL 5 BASIC18.66■□□□□ 0.58
Lima1Q9ERG0 Zfp710-204ENSMUST00000206039 2194 ntAPPRIS ALT2 TSL 1 (best) BASIC18.66■□□□□ 0.58
Lima1Q9ERG0 Gm42939-201ENSMUST00000197514 2205 ntBASIC18.66■□□□□ 0.58
Lima1Q9ERG0 Gm6085-201ENSMUST00000182774 1470 ntBASIC18.66■□□□□ 0.58
Lima1Q9ERG0 1110004F10Rik-201ENSMUST00000032899 1479 ntAPPRIS P1 TSL 1 (best) BASIC18.66■□□□□ 0.58
Lima1Q9ERG0 BC017158-201ENSMUST00000033044 2627 ntAPPRIS P1 TSL 1 (best) BASIC18.66■□□□□ 0.58
Lima1Q9ERG0 Ankra2-205ENSMUST00000150916 1028 ntTSL 1 (best) BASIC18.66■□□□□ 0.58
Lima1Q9ERG0 1110065P20Rik-206ENSMUST00000185036 1223 ntTSL 2 BASIC18.66■□□□□ 0.58
Lima1Q9ERG0 Gm4553-202ENSMUST00000210925 1044 ntAPPRIS P5 BASIC18.66■□□□□ 0.58
Lima1Q9ERG0 Hagh-201ENSMUST00000024974 1101 ntAPPRIS ALT1 TSL 5 BASIC18.66■□□□□ 0.58
Lima1Q9ERG0 Dbnl-201ENSMUST00000020769 1638 ntAPPRIS ALT2 TSL 1 (best) BASIC18.66■□□□□ 0.58
Lima1Q9ERG0 Mgme1-203ENSMUST00000110028 2308 ntAPPRIS P1 TSL 1 (best) BASIC18.66■□□□□ 0.58
Lima1Q9ERG0 Tulp1-201ENSMUST00000041819 2017 ntAPPRIS P1 TSL 1 (best) BASIC18.66■□□□□ 0.58
Lima1Q9ERG0 Syt6-205ENSMUST00000121834 1710 ntAPPRIS P1 TSL 1 (best) BASIC18.66■□□□□ 0.58
Lima1Q9ERG0 Dleu2-203ENSMUST00000182259 1437 ntTSL 1 (best) BASIC18.66■□□□□ 0.58
Lima1Q9ERG0 Inppl1-202ENSMUST00000165052 4730 ntAPPRIS P1 TSL 1 (best) BASIC18.65■□□□□ 0.58
Lima1Q9ERG0 Gm45606-201ENSMUST00000209836 2795 ntBASIC18.65■□□□□ 0.58
Lima1Q9ERG0 Kcnt1-203ENSMUST00000114172 5219 ntAPPRIS ALT2 TSL 1 (best) BASIC18.65■□□□□ 0.58
Lima1Q9ERG0 Stk3-201ENSMUST00000018476 2914 ntAPPRIS P2 TSL 1 (best) BASIC18.65■□□□□ 0.58
Lima1Q9ERG0 Ubtf-204ENSMUST00000107117 3258 ntAPPRIS ALT2 TSL 5 BASIC18.65■□□□□ 0.58
Lima1Q9ERG0 Nfatc2-201ENSMUST00000029057 2310 ntTSL 1 (best) BASIC18.65■□□□□ 0.58
Lima1Q9ERG0 Wnk2-201ENSMUST00000035538 6630 ntAPPRIS ALT2 TSL 1 (best) BASIC18.65■□□□□ 0.58
Lima1Q9ERG0 H2-Q7-204ENSMUST00000116598 1134 ntTSL 5 BASIC18.65■□□□□ 0.58
Lima1Q9ERG0 Ly6h-206ENSMUST00000156032 752 ntAPPRIS P3 TSL 3 BASIC18.65■□□□□ 0.58
Lima1Q9ERG0 Gm20522-201ENSMUST00000173576 784 ntTSL 1 (best) BASIC18.65■□□□□ 0.58
Lima1Q9ERG0 D630002J18Rik-201ENSMUST00000181854 1115 ntBASIC18.65■□□□□ 0.58
Lima1Q9ERG0 Cyc1-201ENSMUST00000023210 1194 ntAPPRIS P1 TSL 1 (best) BASIC18.65■□□□□ 0.58
Lima1Q9ERG0 Ly6h-201ENSMUST00000023241 906 ntAPPRIS ALT1 TSL 2 BASIC18.65■□□□□ 0.58
Lima1Q9ERG0 Gm4737-201ENSMUST00000059524 2093 ntAPPRIS P1 BASIC18.65■□□□□ 0.58
Lima1Q9ERG0 Coq10b-201ENSMUST00000027125 1733 ntAPPRIS ALT2 TSL 1 (best) BASIC18.65■□□□□ 0.58
Lima1Q9ERG0 Wnk2-202ENSMUST00000049265 6738 ntAPPRIS ALT2 TSL 5 BASIC18.65■□□□□ 0.58
Lima1Q9ERG0 Nudt10-201ENSMUST00000103006 1775 ntAPPRIS P1 TSL 1 (best) BASIC18.65■□□□□ 0.58
Lima1Q9ERG0 Cetn4-205ENSMUST00000140956 2981 ntTSL 1 (best) BASIC18.65■□□□□ 0.58
Lima1Q9ERG0 S1pr4-201ENSMUST00000053646 2386 ntAPPRIS P1 BASIC18.64■□□□□ 0.58
Lima1Q9ERG0 Dlgap2-209ENSMUST00000152652 3842 ntAPPRIS P4 TSL 1 (best) BASIC18.64■□□□□ 0.58
Lima1Q9ERG0 Atxn7-203ENSMUST00000223880 2946 ntAPPRIS P2 BASIC18.64■□□□□ 0.58
Lima1Q9ERG0 Rrad-201ENSMUST00000034351 1577 ntAPPRIS P1 TSL 1 (best) BASIC18.64■□□□□ 0.58
Lima1Q9ERG0 Nol4l-201ENSMUST00000035346 6399 ntAPPRIS P1 TSL 1 (best) BASIC18.64■□□□□ 0.57
Lima1Q9ERG0 Exog-202ENSMUST00000164213 2627 ntTSL 1 (best) BASIC18.64■□□□□ 0.57
Lima1Q9ERG0 Gm10575-201ENSMUST00000097947 1671 ntTSL 1 (best) BASIC18.64■□□□□ 0.57
Lima1Q9ERG0 Gmds-201ENSMUST00000041859 1713 ntAPPRIS P1 TSL 1 (best) BASIC18.64■□□□□ 0.57
Lima1Q9ERG0 Ythdc1-202ENSMUST00000119339 3222 ntAPPRIS ALT2 TSL 5 BASIC18.64■□□□□ 0.57
Lima1Q9ERG0 Sstr1-202ENSMUST00000110671 1752 ntAPPRIS P1 TSL 2 BASIC18.64■□□□□ 0.57
Lima1Q9ERG0 1700016H13Rik-203ENSMUST00000120108 797 ntAPPRIS P1 TSL 2 BASIC18.64■□□□□ 0.57
Lima1Q9ERG0 Dmwd-202ENSMUST00000108479 2388 ntAPPRIS ALT2 TSL 5 BASIC18.64■□□□□ 0.57
Lima1Q9ERG0 Anks1b-217ENSMUST00000182550 1868 ntTSL 5 BASIC18.64■□□□□ 0.57
Lima1Q9ERG0 Gas2l1-203ENSMUST00000109895 2530 ntAPPRIS P3 TSL 1 (best) BASIC18.64■□□□□ 0.57
Lima1Q9ERG0 Polr3h-201ENSMUST00000023113 2514 ntAPPRIS P1 TSL 1 (best) BASIC18.64■□□□□ 0.57
Lima1Q9ERG0 Ankrd9-204ENSMUST00000140788 1451 ntAPPRIS P2 TSL 3 BASIC18.64■□□□□ 0.57
Lima1Q9ERG0 Arhgap27-202ENSMUST00000092557 1504 ntTSL 2 BASIC18.64■□□□□ 0.57
Lima1Q9ERG0 Adpgk-205ENSMUST00000217570 2484 ntAPPRIS P2 TSL 1 (best) BASIC18.63■□□□□ 0.57
Lima1Q9ERG0 Lrch3-201ENSMUST00000023491 5536 ntAPPRIS P3 TSL 1 (best) BASIC18.63■□□□□ 0.57
Lima1Q9ERG0 Arid1b-201ENSMUST00000092723 7150 ntAPPRIS ALT2 TSL 5 BASIC18.63■□□□□ 0.57
Lima1Q9ERG0 Ssc4d-204ENSMUST00000111153 2745 ntAPPRIS P1 TSL 5 BASIC18.63■□□□□ 0.57
Lima1Q9ERG0 1700003E16Rik-202ENSMUST00000203203 2070 ntTSL 2 BASIC18.63■□□□□ 0.57
Lima1Q9ERG0 Pfdn4-204ENSMUST00000109148 736 ntTSL 3 BASIC18.63■□□□□ 0.57
Lima1Q9ERG0 Hotairm1-201ENSMUST00000129546 409 ntTSL 1 (best) BASIC18.63■□□□□ 0.57
Lima1Q9ERG0 Gm14486-201ENSMUST00000144704 644 ntTSL 3 BASIC18.63■□□□□ 0.57
Lima1Q9ERG0 Gm6569-201ENSMUST00000154520 811 ntAPPRIS P1 TSL 3 BASIC18.63■□□□□ 0.57
Lima1Q9ERG0 Panx1-202ENSMUST00000164273 5732 ntAPPRIS P1 TSL 1 (best) BASIC18.63■□□□□ 0.57
Lima1Q9ERG0 Gm44832-201ENSMUST00000208849 2303 ntBASIC18.63■□□□□ 0.57
Lima1Q9ERG0 Mmp15-201ENSMUST00000034243 5135 ntAPPRIS P1 TSL 1 (best) BASIC18.63■□□□□ 0.57
Lima1Q9ERG0 Gm9828-202ENSMUST00000126622 1446 ntTSL 3 BASIC18.63■□□□□ 0.57
Lima1Q9ERG0 Gm21949-201ENSMUST00000182006 2369 ntAPPRIS P1 TSL 2 BASIC18.63■□□□□ 0.57
Lima1Q9ERG0 Rab40c-207ENSMUST00000167626 2506 ntAPPRIS P1 TSL 1 (best) BASIC18.63■□□□□ 0.57
Lima1Q9ERG0 Sae1-204ENSMUST00000211741 1663 ntTSL 1 (best) BASIC18.63■□□□□ 0.57
Lima1Q9ERG0 Arx-201ENSMUST00000046565 2881 ntAPPRIS P1 TSL 1 (best) BASIC18.63■□□□□ 0.57
Lima1Q9ERG0 Galnt14-202ENSMUST00000112591 1843 ntTSL 1 (best) BASIC18.63■□□□□ 0.57
Lima1Q9ERG0 Slc11a1-211ENSMUST00000187516 1893 ntAPPRIS ALT2 TSL 5 BASIC18.63■□□□□ 0.57
Lima1Q9ERG0 Schip1-201ENSMUST00000029346 2201 ntTSL 1 (best) BASIC18.62■□□□□ 0.57
Retrieved 100 of 76,532 protein–RNA pairs in 27.2 ms