Protein–RNA interactions for Protein: Q9D706

Rpap3, RNA polymerase II-associated protein 3, mousemouse

Predictions only

Length 660 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Rpap3Q9D706 Hs2st1-201ENSMUST00000043325 6177 ntAPPRIS P1 TSL 1 (best) BASIC20.98■□□□□ 0.95
Rpap3Q9D706 6030419C18Rik-201ENSMUST00000085658 2139 ntAPPRIS P1 TSL 1 (best) BASIC20.98■□□□□ 0.95
Rpap3Q9D706 Kcnip2-202ENSMUST00000079431 2302 ntAPPRIS ALT1 TSL 1 (best) BASIC20.98■□□□□ 0.95
Rpap3Q9D706 Gm16262-201ENSMUST00000162306 1751 ntTSL 1 (best) BASIC20.97■□□□□ 0.95
Rpap3Q9D706 Npr3-205ENSMUST00000228603 2437 ntAPPRIS ALT2 BASIC20.97■□□□□ 0.95
Rpap3Q9D706 Cracr2b-201ENSMUST00000053670 1698 ntAPPRIS P2 TSL 1 (best) BASIC20.97■□□□□ 0.95
Rpap3Q9D706 Dsg2-203ENSMUST00000121837 953 ntTSL 1 (best) BASIC20.97■□□□□ 0.95
Rpap3Q9D706 Ndufa12-204ENSMUST00000179990 566 ntTSL 1 (best) BASIC20.97■□□□□ 0.95
Rpap3Q9D706 Gm45890-201ENSMUST00000212043 1026 ntTSL 5 BASIC20.97■□□□□ 0.95
Rpap3Q9D706 AC142113.1-201ENSMUST00000214931 801 ntTSL 5 BASIC20.97■□□□□ 0.95
Rpap3Q9D706 Rasa1-201ENSMUST00000109552 4563 ntAPPRIS P1 TSL 1 (best) BASIC20.97■□□□□ 0.95
Rpap3Q9D706 Kctd2-202ENSMUST00000106533 2649 ntTSL 1 (best) BASIC20.97■□□□□ 0.95
Rpap3Q9D706 Siah1b-201ENSMUST00000037928 1783 ntAPPRIS P1 TSL 1 (best) BASIC20.97■□□□□ 0.95
Rpap3Q9D706 Mprip-204ENSMUST00000116371 8766 ntAPPRIS ALT2 TSL 1 (best) BASIC20.97■□□□□ 0.95
Rpap3Q9D706 Ppm1m-203ENSMUST00000140761 1846 ntAPPRIS P1 TSL 1 (best) BASIC20.97■□□□□ 0.95
Rpap3Q9D706 Ntmt1-201ENSMUST00000041830 1387 ntAPPRIS P1 TSL 1 (best) BASIC20.97■□□□□ 0.95
Rpap3Q9D706 Macrod2-202ENSMUST00000078027 1669 ntAPPRIS P2 TSL 5 BASIC20.96■□□□□ 0.95
Rpap3Q9D706 Smarcd3-208ENSMUST00000195943 1712 ntTSL 5 BASIC20.96■□□□□ 0.95
Rpap3Q9D706 Smarcd3-201ENSMUST00000030791 1735 ntAPPRIS P1 TSL 1 (best) BASIC20.96■□□□□ 0.95
Rpap3Q9D706 Nat9-201ENSMUST00000103038 1143 ntAPPRIS P1 TSL 1 (best) BASIC20.96■□□□□ 0.95
Rpap3Q9D706 Prmt1-205ENSMUST00000207659 945 ntTSL 5 BASIC20.96■□□□□ 0.95
Rpap3Q9D706 Prmt1-201ENSMUST00000045325 1071 ntTSL 5 BASIC20.96■□□□□ 0.95
Rpap3Q9D706 Grrp1-201ENSMUST00000060050 1226 ntAPPRIS P1 TSL 1 (best) BASIC20.96■□□□□ 0.95
Rpap3Q9D706 Naglu-201ENSMUST00000001802 2560 ntAPPRIS P1 TSL 1 (best) BASIC20.96■□□□□ 0.95
Rpap3Q9D706 Smarcad1-201ENSMUST00000031984 5168 ntAPPRIS P1 TSL 1 (best) BASIC20.96■□□□□ 0.95
Rpap3Q9D706 Gm5540-201ENSMUST00000131852 1848 ntBASIC20.96■□□□□ 0.95
Rpap3Q9D706 Cd24a-201ENSMUST00000058714 1816 ntAPPRIS P2 TSL 1 (best) BASIC20.96■□□□□ 0.95
Rpap3Q9D706 Arrb2-205ENSMUST00000108568 1777 ntTSL 1 (best) BASIC20.95■□□□□ 0.94
Rpap3Q9D706 Baiap2-203ENSMUST00000103021 3398 ntAPPRIS ALT2 TSL 1 (best) BASIC20.95■□□□□ 0.94
Rpap3Q9D706 Lpar3-201ENSMUST00000039164 2464 ntAPPRIS P1 TSL 1 (best) BASIC20.95■□□□□ 0.94
Rpap3Q9D706 Sp3os-201ENSMUST00000123087 583 ntTSL 1 (best) BASIC20.95■□□□□ 0.94
Rpap3Q9D706 2900042K21Rik-201ENSMUST00000194444 653 ntBASIC20.95■□□□□ 0.94
Rpap3Q9D706 Gm44238-201ENSMUST00000203300 353 ntTSL 3 BASIC20.95■□□□□ 0.94
Rpap3Q9D706 1810059H22Rik-205ENSMUST00000204570 690 ntTSL 1 (best) BASIC20.95■□□□□ 0.94
Rpap3Q9D706 Rabac1-203ENSMUST00000205871 986 ntTSL 1 (best) BASIC20.95■□□□□ 0.94
Rpap3Q9D706 Park7-201ENSMUST00000030805 908 ntAPPRIS P1 TSL 1 (best) BASIC20.95■□□□□ 0.94
Rpap3Q9D706 1700018M17Rik-201ENSMUST00000052502 456 ntBASIC20.95■□□□□ 0.94
Rpap3Q9D706 Vgll2-201ENSMUST00000058347 966 ntAPPRIS ALT2 TSL 1 (best) BASIC20.95■□□□□ 0.94
Rpap3Q9D706 E4f1-201ENSMUST00000056032 2574 ntAPPRIS P2 TSL 1 (best) BASIC20.95■□□□□ 0.94
Rpap3Q9D706 Chtop-207ENSMUST00000107346 1321 ntTSL 1 (best) BASIC20.95■□□□□ 0.94
Rpap3Q9D706 Chtop-202ENSMUST00000049937 2012 ntAPPRIS P1 TSL 1 (best) BASIC20.95■□□□□ 0.94
Rpap3Q9D706 Tcf7-202ENSMUST00000109071 1742 ntAPPRIS P1 TSL 1 (best) BASIC20.95■□□□□ 0.94
Rpap3Q9D706 Gal3st3-201ENSMUST00000061169 2421 ntAPPRIS P1 TSL 1 (best) BASIC20.95■□□□□ 0.94
Rpap3Q9D706 Fam105a-201ENSMUST00000100739 2867 ntTSL 1 (best) BASIC20.94■□□□□ 0.94
Rpap3Q9D706 Gm15441-202ENSMUST00000107095 1653 ntTSL 1 (best) BASIC20.94■□□□□ 0.94
Rpap3Q9D706 Aunip-201ENSMUST00000105866 1275 ntAPPRIS P1 TSL 1 (best) BASIC20.94■□□□□ 0.94
Rpap3Q9D706 Fam98c-203ENSMUST00000134176 1189 ntTSL 2 BASIC20.94■□□□□ 0.94
Rpap3Q9D706 Gng2-202ENSMUST00000159028 458 ntAPPRIS P1 TSL 2 BASIC20.94■□□□□ 0.94
Rpap3Q9D706 Gm26524-201ENSMUST00000192339 390 ntBASIC20.94■□□□□ 0.94
Rpap3Q9D706 Lbx2-201ENSMUST00000041265 817 ntAPPRIS P1 TSL 1 (best) BASIC20.94■□□□□ 0.94
Rpap3Q9D706 Gm10065-201ENSMUST00000076238 345 ntAPPRIS P1 BASIC20.94■□□□□ 0.94
Rpap3Q9D706 1700028I16Rik-201ENSMUST00000076984 1048 ntTSL 5 BASIC20.94■□□□□ 0.94
Rpap3Q9D706 Paip1-201ENSMUST00000026520 2551 ntAPPRIS P3 TSL 1 (best) BASIC20.94■□□□□ 0.94
Rpap3Q9D706 Arpc5-202ENSMUST00000097536 1737 ntTSL 1 (best) BASIC20.94■□□□□ 0.94
Rpap3Q9D706 Eif1-201ENSMUST00000049385 1322 ntAPPRIS P1 TSL 1 (best) BASIC20.94■□□□□ 0.94
Rpap3Q9D706 Slc26a10-201ENSMUST00000095270 2215 ntAPPRIS P2 TSL 5 BASIC20.94■□□□□ 0.94
Rpap3Q9D706 Metrn-202ENSMUST00000165838 1363 ntAPPRIS P1 TSL 1 (best) BASIC20.94■□□□□ 0.94
Rpap3Q9D706 Pitx3-201ENSMUST00000026259 1380 ntAPPRIS P1 TSL 1 (best) BASIC20.94■□□□□ 0.94
Rpap3Q9D706 Spint1-203ENSMUST00000110817 2323 ntAPPRIS P1 TSL 1 (best) BASIC20.94■□□□□ 0.94
Rpap3Q9D706 Trabd-206ENSMUST00000169891 1422 ntAPPRIS ALT2 TSL 1 (best) BASIC20.94■□□□□ 0.94
Rpap3Q9D706 Siah2-201ENSMUST00000070368 2511 ntAPPRIS P1 TSL 1 (best) BASIC20.94■□□□□ 0.94
Rpap3Q9D706 Gm37563-201ENSMUST00000192580 1513 ntBASIC20.94■□□□□ 0.94
Rpap3Q9D706 Gm37352-201ENSMUST00000193908 2181 ntBASIC20.93■□□□□ 0.94
Rpap3Q9D706 Slc9a2-201ENSMUST00000027231 5019 ntAPPRIS P1 TSL 1 (best) BASIC20.93■□□□□ 0.94
Rpap3Q9D706 H19-202ENSMUST00000136359 2286 ntTSL 1 (best) BASIC20.93■□□□□ 0.94
Rpap3Q9D706 Dmrt1-201ENSMUST00000025755 2340 ntAPPRIS P1 TSL 1 (best) BASIC20.93■□□□□ 0.94
Rpap3Q9D706 Map2k2-207ENSMUST00000143517 2405 ntAPPRIS P3 TSL 1 (best) BASIC20.93■□□□□ 0.94
Rpap3Q9D706 Plin1-202ENSMUST00000178257 1841 ntAPPRIS P1 TSL 1 (best) BASIC20.93■□□□□ 0.94
Rpap3Q9D706 Gpc3-202ENSMUST00000114857 1880 ntTSL 1 (best) BASIC20.93■□□□□ 0.94
Rpap3Q9D706 Acot8-202ENSMUST00000103094 1152 ntAPPRIS P1 TSL 1 (best) BASIC20.93■□□□□ 0.94
Rpap3Q9D706 Acot8-201ENSMUST00000017451 1055 ntTSL 1 (best) BASIC20.93■□□□□ 0.94
Rpap3Q9D706 Smn1-201ENSMUST00000022147 1222 ntAPPRIS P1 TSL 1 (best) BASIC20.93■□□□□ 0.94
Rpap3Q9D706 AC122769.4-201ENSMUST00000228166 901 ntBASIC20.93■□□□□ 0.94
Rpap3Q9D706 1110004E09Rik-201ENSMUST00000023694 1143 ntAPPRIS P1 TSL 1 (best) BASIC20.93■□□□□ 0.94
Rpap3Q9D706 Tcp11-201ENSMUST00000042692 1984 ntAPPRIS P3 TSL 1 (best) BASIC20.93■□□□□ 0.94
Rpap3Q9D706 Acot7-201ENSMUST00000030779 1425 ntAPPRIS ALT2 TSL 1 (best) BASIC20.93■□□□□ 0.94
Rpap3Q9D706 Rad1-201ENSMUST00000022856 1514 ntAPPRIS P1 TSL 1 (best) BASIC20.93■□□□□ 0.94
Rpap3Q9D706 AC165249.1-201ENSMUST00000220031 1599 ntTSL 1 (best) BASIC20.93■□□□□ 0.94
Rpap3Q9D706 Khdc3-201ENSMUST00000034737 1681 ntAPPRIS P3 TSL 1 (best) BASIC20.93■□□□□ 0.94
Rpap3Q9D706 Mprip-202ENSMUST00000072031 8718 ntAPPRIS P4 TSL 1 (best) BASIC20.92■□□□□ 0.94
Rpap3Q9D706 Mras-201ENSMUST00000035045 4701 ntAPPRIS P1 TSL 1 (best) BASIC20.92■□□□□ 0.94
Rpap3Q9D706 Kcnq2-203ENSMUST00000081528 2382 ntTSL 1 (best) BASIC20.92■□□□□ 0.94
Rpap3Q9D706 Nhlh1-201ENSMUST00000059794 2464 ntAPPRIS P1 TSL 1 (best) BASIC20.92■□□□□ 0.94
Rpap3Q9D706 5730522E02Rik-201ENSMUST00000109511 1162 ntAPPRIS P5 TSL 1 (best) BASIC20.92■□□□□ 0.94
Rpap3Q9D706 Arl2bp-202ENSMUST00000109527 1133 ntTSL 1 (best) BASIC20.92■□□□□ 0.94
Rpap3Q9D706 2310068J16Rik-201ENSMUST00000188271 1124 ntBASIC20.92■□□□□ 0.94
Rpap3Q9D706 Glrx5-201ENSMUST00000021522 2925 ntAPPRIS P1 TSL 1 (best) BASIC20.92■□□□□ 0.94
Rpap3Q9D706 Sra1-201ENSMUST00000001415 2061 ntAPPRIS P4 TSL 5 BASIC20.92■□□□□ 0.94
Rpap3Q9D706 Sept5-201ENSMUST00000096987 2127 ntAPPRIS P1 TSL 1 (best) BASIC20.92■□□□□ 0.94
Rpap3Q9D706 Clasp2-211ENSMUST00000216817 2234 ntTSL 1 (best) BASIC20.92■□□□□ 0.94
Rpap3Q9D706 Cav2-201ENSMUST00000000058 2733 ntAPPRIS P1 TSL 1 (best) BASIC20.91■□□□□ 0.94
Rpap3Q9D706 Gm11627-202ENSMUST00000107081 818 ntAPPRIS P1 TSL 2 BASIC20.91■□□□□ 0.94
Rpap3Q9D706 Kirrel3-202ENSMUST00000115148 2851 ntAPPRIS P3 TSL 5 BASIC20.91■□□□□ 0.94
Rpap3Q9D706 Snapc2-201ENSMUST00000011981 1536 ntAPPRIS P1 TSL 1 (best) BASIC20.91■□□□□ 0.94
Rpap3Q9D706 Vkorc1-202ENSMUST00000119922 387 ntTSL 3 BASIC20.91■□□□□ 0.94
Rpap3Q9D706 Gm17041-201ENSMUST00000163196 479 ntTSL 3 BASIC20.91■□□□□ 0.94
Rpap3Q9D706 Slc11a1-211ENSMUST00000187516 1893 ntAPPRIS ALT2 TSL 5 BASIC20.91■□□□□ 0.94
Rpap3Q9D706 Wdr20-205ENSMUST00000193053 1351 ntTSL 1 (best) BASIC20.91■□□□□ 0.94
Rpap3Q9D706 1810010K12Rik-201ENSMUST00000070378 1324 ntBASIC20.91■□□□□ 0.94
Rpap3Q9D706 Gm13509-201ENSMUST00000119733 1308 ntBASIC20.9■□□□□ 0.94
Retrieved 100 of 76,532 protein–RNA pairs in 37.7 ms