Protein–RNA interactions for Protein: Q8CEG5

Ccdc28b, Coiled-coil domain-containing protein 28B, mousemouse

Predictions only

Length 200 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Ccdc28bQ8CEG5 Eml2-203ENSMUST00000120595 2255 ntAPPRIS ALT2 TSL 1 (best) BASIC18.74■□□□□ 0.59
Ccdc28bQ8CEG5 Naa30-205ENSMUST00000153488 4446 ntAPPRIS P2 TSL 1 (best) BASIC18.73■□□□□ 0.59
Ccdc28bQ8CEG5 Vgll2-202ENSMUST00000163017 1650 ntAPPRIS P3 TSL 1 (best) BASIC18.73■□□□□ 0.59
Ccdc28bQ8CEG5 Fmnl2-201ENSMUST00000049483 5461 ntTSL 5 BASIC18.73■□□□□ 0.59
Ccdc28bQ8CEG5 Klhl25-202ENSMUST00000171155 3403 ntAPPRIS P1 TSL 1 (best) BASIC18.73■□□□□ 0.59
Ccdc28bQ8CEG5 D830050J10Rik-202ENSMUST00000203858 1813 ntBASIC18.73■□□□□ 0.59
Ccdc28bQ8CEG5 AC154266.1-201ENSMUST00000223190 503 ntBASIC18.73■□□□□ 0.59
Ccdc28bQ8CEG5 Igfbp7-201ENSMUST00000046746 1116 ntAPPRIS ALT2 TSL 1 (best) BASIC18.73■□□□□ 0.59
Ccdc28bQ8CEG5 Rps19bp1-201ENSMUST00000052499 830 ntAPPRIS P1 TSL 1 (best) BASIC18.73■□□□□ 0.59
Ccdc28bQ8CEG5 Col4a3bp-202ENSMUST00000109444 5285 ntTSL 1 (best) BASIC18.73■□□□□ 0.59
Ccdc28bQ8CEG5 D830036C21Rik-202ENSMUST00000208263 1548 ntBASIC18.73■□□□□ 0.59
Ccdc28bQ8CEG5 Ubtd1-201ENSMUST00000026170 1527 ntAPPRIS P1 TSL 1 (best) BASIC18.73■□□□□ 0.59
Ccdc28bQ8CEG5 Mrpl38-201ENSMUST00000106439 1411 ntAPPRIS P1 TSL 1 (best) BASIC18.73■□□□□ 0.59
Ccdc28bQ8CEG5 Ube2d2a-201ENSMUST00000167406 2393 ntAPPRIS P1 TSL 5 BASIC18.73■□□□□ 0.59
Ccdc28bQ8CEG5 S1pr4-201ENSMUST00000053646 2386 ntAPPRIS P1 BASIC18.73■□□□□ 0.59
Ccdc28bQ8CEG5 Khdrbs2-201ENSMUST00000027226 2281 ntAPPRIS P1 TSL 1 (best) BASIC18.72■□□□□ 0.59
Ccdc28bQ8CEG5 Dhx15-205ENSMUST00000199321 2550 ntTSL 1 (best) BASIC18.72■□□□□ 0.59
Ccdc28bQ8CEG5 Plppr3-207ENSMUST00000167250 3063 ntAPPRIS ALT2 TSL 2 BASIC18.72■□□□□ 0.59
Ccdc28bQ8CEG5 Armc10-202ENSMUST00000095495 2700 ntTSL 1 (best) BASIC18.72■□□□□ 0.59
Ccdc28bQ8CEG5 Mtm1-204ENSMUST00000101501 770 ntTSL 1 (best) BASIC18.72■□□□□ 0.59
Ccdc28bQ8CEG5 Gm16253-201ENSMUST00000148290 550 ntAPPRIS P1 TSL 1 (best) BASIC18.72■□□□□ 0.59
Ccdc28bQ8CEG5 Vegfa-211ENSMUST00000167860 975 ntTSL 1 (best) BASIC18.72■□□□□ 0.59
Ccdc28bQ8CEG5 A930002H24Rik-201ENSMUST00000050753 492 ntAPPRIS P1 BASIC18.72■□□□□ 0.59
Ccdc28bQ8CEG5 Selenof-201ENSMUST00000082437 1514 ntAPPRIS P1 TSL 1 (best) BASIC18.72■□□□□ 0.59
Ccdc28bQ8CEG5 Nags-201ENSMUST00000055409 2028 ntAPPRIS P1 TSL 1 (best) BASIC18.72■□□□□ 0.59
Ccdc28bQ8CEG5 Itsn1-206ENSMUST00000113999 5393 ntTSL 5 BASIC18.72■□□□□ 0.59
Ccdc28bQ8CEG5 Fkbp1a-201ENSMUST00000044011 1658 ntAPPRIS P1 TSL 1 (best) BASIC18.72■□□□□ 0.59
Ccdc28bQ8CEG5 Ints8-202ENSMUST00000108318 3169 ntTSL 5 BASIC18.72■□□□□ 0.59
Ccdc28bQ8CEG5 Mon2-202ENSMUST00000073792 9301 ntAPPRIS ALT2 TSL 5 BASIC18.72■□□□□ 0.59
Ccdc28bQ8CEG5 Zfp746-203ENSMUST00000203609 3648 ntAPPRIS ALT2 TSL 5 BASIC18.72■□□□□ 0.59
Ccdc28bQ8CEG5 Lrch2-201ENSMUST00000112819 4892 ntAPPRIS P1 TSL 5 BASIC18.71■□□□□ 0.59
Ccdc28bQ8CEG5 Ttc39a-203ENSMUST00000106619 1778 ntTSL 1 (best) BASIC18.71■□□□□ 0.59
Ccdc28bQ8CEG5 Rapgef1-203ENSMUST00000102872 6402 ntAPPRIS P3 TSL 1 (best) BASIC18.71■□□□□ 0.59
Ccdc28bQ8CEG5 Gpr162-204ENSMUST00000204667 2855 ntAPPRIS P1 TSL 1 (best) BASIC18.71■□□□□ 0.59
Ccdc28bQ8CEG5 Rasgrp2-201ENSMUST00000035716 2219 ntAPPRIS P1 TSL 2 BASIC18.71■□□□□ 0.59
Ccdc28bQ8CEG5 Rnf44-204ENSMUST00000125871 4292 ntAPPRIS P1 TSL 1 (best) BASIC18.71■□□□□ 0.59
Ccdc28bQ8CEG5 Myd88-201ENSMUST00000035092 1960 ntAPPRIS P1 TSL 1 (best) BASIC18.71■□□□□ 0.59
Ccdc28bQ8CEG5 Runx2-210ENSMUST00000162373 1565 ntAPPRIS ALT2 TSL 5 BASIC18.71■□□□□ 0.59
Ccdc28bQ8CEG5 Agpat3-201ENSMUST00000001240 5980 ntAPPRIS P1 TSL 1 (best) BASIC18.71■□□□□ 0.59
Ccdc28bQ8CEG5 Sec61a2-202ENSMUST00000102981 2448 ntAPPRIS P1 TSL 1 (best) BASIC18.71■□□□□ 0.59
Ccdc28bQ8CEG5 Hoxa1-202ENSMUST00000120363 2043 ntTSL 1 (best) BASIC18.71■□□□□ 0.59
Ccdc28bQ8CEG5 1700028E10Rik-201ENSMUST00000181114 2034 ntTSL 1 (best) BASIC18.71■□□□□ 0.59
Ccdc28bQ8CEG5 5033417F24Rik-201ENSMUST00000181575 1787 ntTSL 1 (best) BASIC18.7■□□□□ 0.58
Ccdc28bQ8CEG5 Hpn-202ENSMUST00000108102 1830 ntTSL 1 (best) BASIC18.7■□□□□ 0.58
Ccdc28bQ8CEG5 Dlgap2-203ENSMUST00000133298 4503 ntAPPRIS ALT2 TSL 1 (best) BASIC18.7■□□□□ 0.58
Ccdc28bQ8CEG5 Srsf6-202ENSMUST00000126163 515 ntTSL 5 BASIC18.7■□□□□ 0.58
Ccdc28bQ8CEG5 AB124611-203ENSMUST00000173769 1188 ntAPPRIS P3 TSL 1 (best) BASIC18.7■□□□□ 0.58
Ccdc28bQ8CEG5 Slc11a1-211ENSMUST00000187516 1893 ntAPPRIS ALT2 TSL 5 BASIC18.7■□□□□ 0.58
Ccdc28bQ8CEG5 Sin3b-203ENSMUST00000212095 1257 ntTSL 1 (best) BASIC18.7■□□□□ 0.58
Ccdc28bQ8CEG5 Gmpr-201ENSMUST00000000260 1580 ntAPPRIS P1 TSL 1 (best) BASIC18.7■□□□□ 0.58
Ccdc28bQ8CEG5 1700030C10Rik-201ENSMUST00000110971 1471 ntBASIC18.7■□□□□ 0.58
Ccdc28bQ8CEG5 Asnsd1-201ENSMUST00000027264 2442 ntAPPRIS P1 TSL 1 (best) BASIC18.7■□□□□ 0.58
Ccdc28bQ8CEG5 Ttc9-202ENSMUST00000218362 4754 ntAPPRIS P1 TSL 1 (best) BASIC18.7■□□□□ 0.58
Ccdc28bQ8CEG5 Kcne1l-201ENSMUST00000134825 1543 ntAPPRIS P1 BASIC18.69■□□□□ 0.58
Ccdc28bQ8CEG5 Dyrk1b-203ENSMUST00000172761 2018 ntAPPRIS ALT1 TSL 1 (best) BASIC18.69■□□□□ 0.58
Ccdc28bQ8CEG5 Nrros-203ENSMUST00000115165 2389 ntAPPRIS ALT2 TSL 1 (best) BASIC18.69■□□□□ 0.58
Ccdc28bQ8CEG5 Cpne7-201ENSMUST00000037900 2398 ntAPPRIS P1 TSL 1 (best) BASIC18.69■□□□□ 0.58
Ccdc28bQ8CEG5 Fbrsl1-206ENSMUST00000198834 2571 ntAPPRIS ALT2 TSL 1 (best) BASIC18.69■□□□□ 0.58
Ccdc28bQ8CEG5 Pdgfa-204ENSMUST00000110897 1287 ntAPPRIS P1 TSL 5 BASIC18.69■□□□□ 0.58
Ccdc28bQ8CEG5 3110082J24Rik-202ENSMUST00000199573 767 ntAPPRIS P1 TSL 1 (best) BASIC18.69■□□□□ 0.58
Ccdc28bQ8CEG5 Krt8-ps-201ENSMUST00000208495 945 ntBASIC18.69■□□□□ 0.58
Ccdc28bQ8CEG5 Cd82-201ENSMUST00000028644 1824 ntAPPRIS P1 TSL 1 (best) BASIC18.69■□□□□ 0.58
Ccdc28bQ8CEG5 Gm37352-201ENSMUST00000193908 2181 ntBASIC18.69■□□□□ 0.58
Ccdc28bQ8CEG5 Sae1-204ENSMUST00000211741 1663 ntTSL 1 (best) BASIC18.69■□□□□ 0.58
Ccdc28bQ8CEG5 AB124611-202ENSMUST00000086361 1310 ntAPPRIS ALT2 TSL 1 (best) BASIC18.69■□□□□ 0.58
Ccdc28bQ8CEG5 Nck2-201ENSMUST00000086421 2772 ntAPPRIS P1 TSL 1 (best) BASIC18.69■□□□□ 0.58
Ccdc28bQ8CEG5 Gm5898-201ENSMUST00000121016 2071 ntBASIC18.69■□□□□ 0.58
Ccdc28bQ8CEG5 Lyrm4-201ENSMUST00000053265 2086 ntAPPRIS P1 TSL 1 (best) BASIC18.69■□□□□ 0.58
Ccdc28bQ8CEG5 Cxxc1-201ENSMUST00000025444 2618 ntAPPRIS P1 TSL 1 (best) BASIC18.69■□□□□ 0.58
Ccdc28bQ8CEG5 Gng12-202ENSMUST00000114222 1354 ntAPPRIS P1 TSL 1 (best) BASIC18.68■□□□□ 0.58
Ccdc28bQ8CEG5 Gm45844-202ENSMUST00000209325 2450 ntAPPRIS ALT2 TSL 1 (best) BASIC18.68■□□□□ 0.58
Ccdc28bQ8CEG5 Klhl36-201ENSMUST00000034287 2181 ntAPPRIS P1 TSL 1 (best) BASIC18.68■□□□□ 0.58
Ccdc28bQ8CEG5 Plekhf2-201ENSMUST00000054776 2977 ntAPPRIS P1 TSL 1 (best) BASIC18.68■□□□□ 0.58
Ccdc28bQ8CEG5 Gm11691-201ENSMUST00000130963 658 ntTSL 2 BASIC18.68■□□□□ 0.58
Ccdc28bQ8CEG5 Hmg20b-202ENSMUST00000105323 1463 ntAPPRIS P1 TSL 1 (best) BASIC18.68■□□□□ 0.58
Ccdc28bQ8CEG5 9130221H12Rik-201ENSMUST00000169914 1465 ntTSL 1 (best) BASIC18.68■□□□□ 0.58
Ccdc28bQ8CEG5 Gm11762-201ENSMUST00000135630 1705 ntTSL 1 (best) BASIC18.68■□□□□ 0.58
Ccdc28bQ8CEG5 Dusp28-201ENSMUST00000060913 1314 ntAPPRIS P1 TSL 1 (best) BASIC18.68■□□□□ 0.58
Ccdc28bQ8CEG5 Ube2q2-201ENSMUST00000059555 3456 ntAPPRIS P3 TSL 1 (best) BASIC18.68■□□□□ 0.58
Ccdc28bQ8CEG5 9330111N05Rik-202ENSMUST00000181043 2449 ntTSL 1 (best) BASIC18.68■□□□□ 0.58
Ccdc28bQ8CEG5 Rp2-203ENSMUST00000115391 1398 ntAPPRIS P1 TSL 1 (best) BASIC18.68■□□□□ 0.58
Ccdc28bQ8CEG5 Sri-205ENSMUST00000148633 2251 ntAPPRIS P1 TSL 1 (best) BASIC18.67■□□□□ 0.58
Ccdc28bQ8CEG5 4930540M05Rik-201ENSMUST00000180527 2068 ntTSL 1 (best) BASIC18.67■□□□□ 0.58
Ccdc28bQ8CEG5 2810004N23Rik-201ENSMUST00000034465 2340 ntAPPRIS P1 TSL 1 (best) BASIC18.67■□□□□ 0.58
Ccdc28bQ8CEG5 Six3-203ENSMUST00000176081 3680 ntAPPRIS P2 TSL 1 (best) BASIC18.67■□□□□ 0.58
Ccdc28bQ8CEG5 Cep170b-202ENSMUST00000101018 6641 ntAPPRIS P1 TSL 1 (best) BASIC18.67■□□□□ 0.58
Ccdc28bQ8CEG5 Wnk2-201ENSMUST00000035538 6630 ntAPPRIS ALT2 TSL 1 (best) BASIC18.67■□□□□ 0.58
Ccdc28bQ8CEG5 Coq10b-201ENSMUST00000027125 1733 ntAPPRIS ALT2 TSL 1 (best) BASIC18.67■□□□□ 0.58
Ccdc28bQ8CEG5 Clta-204ENSMUST00000107849 1099 ntAPPRIS ALT2 TSL 1 (best) BASIC18.67■□□□□ 0.58
Ccdc28bQ8CEG5 Clta-205ENSMUST00000107851 1135 ntAPPRIS P4 TSL 2 BASIC18.67■□□□□ 0.58
Ccdc28bQ8CEG5 1700016H13Rik-203ENSMUST00000120108 797 ntAPPRIS P1 TSL 2 BASIC18.67■□□□□ 0.58
Ccdc28bQ8CEG5 Bloc1s4-201ENSMUST00000071949 1273 ntAPPRIS P1 BASIC18.67■□□□□ 0.58
Ccdc28bQ8CEG5 Xkr4-201ENSMUST00000070533 3634 ntAPPRIS P1 TSL 1 (best) BASIC18.67■□□□□ 0.58
Ccdc28bQ8CEG5 Scamp3-202ENSMUST00000098941 1338 ntTSL 1 (best) BASIC18.67■□□□□ 0.58
Ccdc28bQ8CEG5 Baiap2-202ENSMUST00000075180 3518 ntAPPRIS ALT2 TSL 1 (best) BASIC18.67■□□□□ 0.58
Ccdc28bQ8CEG5 Lrrc14-204ENSMUST00000137649 2832 ntAPPRIS P1 TSL 1 (best) BASIC18.67■□□□□ 0.58
Ccdc28bQ8CEG5 Adra2a-201ENSMUST00000036700 3801 ntAPPRIS P1 BASIC18.67■□□□□ 0.58
Ccdc28bQ8CEG5 Gm21949-201ENSMUST00000182006 2369 ntAPPRIS P1 TSL 2 BASIC18.67■□□□□ 0.58
Ccdc28bQ8CEG5 Maf1-205ENSMUST00000160853 1651 ntAPPRIS P2 TSL 1 (best) BASIC18.66■□□□□ 0.58
Ccdc28bQ8CEG5 Slc30a5-205ENSMUST00000225922 2722 ntAPPRIS ALT2 BASIC18.66■□□□□ 0.58
Retrieved 100 of 76,532 protein–RNA pairs in 71.4 ms