Protein–RNA interactions for Protein: Q8BZT2

Sh3rf2, Putative E3 ubiquitin-protein ligase SH3RF2, mousemouse

Predictions only

Length 735 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Sh3rf2Q8BZT2 Rex1bd-206ENSMUST00000136913 671 ntAPPRIS ALT2 TSL 5 BASIC19.28■□□□□ 0.68
Sh3rf2Q8BZT2 Gm10653-202ENSMUST00000139570 835 ntBASIC19.28■□□□□ 0.68
Sh3rf2Q8BZT2 Gm45890-201ENSMUST00000212043 1026 ntTSL 5 BASIC19.28■□□□□ 0.68
Sh3rf2Q8BZT2 3110062M04Rik-202ENSMUST00000115006 1501 ntAPPRIS ALT2 TSL 1 (best) BASIC19.28■□□□□ 0.68
Sh3rf2Q8BZT2 Vim-206ENSMUST00000193675 1777 ntAPPRIS ALT2 TSL 5 BASIC19.28■□□□□ 0.68
Sh3rf2Q8BZT2 Cyp4f13-201ENSMUST00000075253 1752 ntAPPRIS P1 TSL 1 (best) BASIC19.28■□□□□ 0.68
Sh3rf2Q8BZT2 Matk-204ENSMUST00000120265 1618 ntAPPRIS ALT2 TSL 5 BASIC19.28■□□□□ 0.68
Sh3rf2Q8BZT2 Ctf1-201ENSMUST00000047393 1352 ntAPPRIS P1 TSL 1 (best) BASIC19.28■□□□□ 0.68
Sh3rf2Q8BZT2 Sema6d-204ENSMUST00000078621 6372 ntTSL 5 BASIC19.28■□□□□ 0.68
Sh3rf2Q8BZT2 Eefsec-206ENSMUST00000205179 2208 ntTSL 1 (best) BASIC19.28■□□□□ 0.68
Sh3rf2Q8BZT2 Ghitm-201ENSMUST00000042564 2573 ntAPPRIS P1 TSL 1 (best) BASIC19.28■□□□□ 0.68
Sh3rf2Q8BZT2 Mprip-202ENSMUST00000072031 8718 ntAPPRIS P4 TSL 1 (best) BASIC19.27■□□□□ 0.68
Sh3rf2Q8BZT2 Cers2-201ENSMUST00000015858 2216 ntAPPRIS P1 TSL 1 (best) BASIC19.27■□□□□ 0.68
Sh3rf2Q8BZT2 2310068J16Rik-201ENSMUST00000188271 1124 ntBASIC19.27■□□□□ 0.68
Sh3rf2Q8BZT2 6430500D05Rik-201ENSMUST00000198286 1176 ntBASIC19.27■□□□□ 0.68
Sh3rf2Q8BZT2 Jsrp1-201ENSMUST00000020435 955 ntAPPRIS ALT2 TSL 2 BASIC19.27■□□□□ 0.68
Sh3rf2Q8BZT2 Selenom-201ENSMUST00000094469 707 ntAPPRIS P1 TSL 1 (best) BASIC19.27■□□□□ 0.68
Sh3rf2Q8BZT2 Mvb12b-201ENSMUST00000041555 4998 ntAPPRIS P1 TSL 1 (best) BASIC19.27■□□□□ 0.68
Sh3rf2Q8BZT2 Zfp3-201ENSMUST00000060444 2061 ntAPPRIS P1 TSL 1 (best) BASIC19.27■□□□□ 0.68
Sh3rf2Q8BZT2 Fkbp9-201ENSMUST00000031795 3009 ntAPPRIS P1 TSL 1 (best) BASIC19.27■□□□□ 0.67
Sh3rf2Q8BZT2 Lhx2-203ENSMUST00000143783 1696 ntTSL 1 (best) BASIC19.27■□□□□ 0.67
Sh3rf2Q8BZT2 9430060I03Rik-201ENSMUST00000191563 1689 ntTSL 1 (best) BASIC19.27■□□□□ 0.67
Sh3rf2Q8BZT2 1810010K12Rik-201ENSMUST00000070378 1324 ntBASIC19.26■□□□□ 0.67
Sh3rf2Q8BZT2 Mpp6-201ENSMUST00000036225 1896 ntTSL 1 (best) BASIC19.26■□□□□ 0.67
Sh3rf2Q8BZT2 Fgfr2-217ENSMUST00000124096 2425 ntTSL 5 BASIC19.26■□□□□ 0.67
Sh3rf2Q8BZT2 Rpl26-202ENSMUST00000101014 657 ntAPPRIS ALT1 TSL 5 BASIC19.26■□□□□ 0.67
Sh3rf2Q8BZT2 Adgrv1-211ENSMUST00000146749 1592 ntTSL 1 (best) BASIC19.26■□□□□ 0.67
Sh3rf2Q8BZT2 Vgf-202ENSMUST00000186451 2277 ntAPPRIS P1 TSL 5 BASIC19.26■□□□□ 0.67
Sh3rf2Q8BZT2 Flot2-203ENSMUST00000100784 2699 ntTSL 1 (best) BASIC19.26■□□□□ 0.67
Sh3rf2Q8BZT2 Phospho1-201ENSMUST00000054173 1910 ntAPPRIS P1 TSL 2 BASIC19.25■□□□□ 0.67
Sh3rf2Q8BZT2 Nab2-202ENSMUST00000099157 2311 ntTSL 1 (best) BASIC19.25■□□□□ 0.67
Sh3rf2Q8BZT2 Cnnm4-201ENSMUST00000153128 4547 ntAPPRIS P1 TSL 1 (best) BASIC19.25■□□□□ 0.67
Sh3rf2Q8BZT2 Kifc3-201ENSMUST00000034240 3277 ntAPPRIS P4 TSL 1 (best) BASIC19.25■□□□□ 0.67
Sh3rf2Q8BZT2 N4bp1-201ENSMUST00000034074 6469 ntAPPRIS P1 TSL 1 (best) BASIC19.25■□□□□ 0.67
Sh3rf2Q8BZT2 Gm26971-201ENSMUST00000182423 1072 ntBASIC19.25■□□□□ 0.67
Sh3rf2Q8BZT2 Oaf-201ENSMUST00000034512 2526 ntAPPRIS P1 TSL 1 (best) BASIC19.25■□□□□ 0.67
Sh3rf2Q8BZT2 Zbed3-202ENSMUST00000221807 1945 ntAPPRIS P1 TSL 1 (best) BASIC19.25■□□□□ 0.67
Sh3rf2Q8BZT2 Cradd-205ENSMUST00000220279 1613 ntAPPRIS P1 TSL 1 (best) BASIC19.25■□□□□ 0.67
Sh3rf2Q8BZT2 Trabd-206ENSMUST00000169891 1422 ntAPPRIS ALT2 TSL 1 (best) BASIC19.25■□□□□ 0.67
Sh3rf2Q8BZT2 Baiap2-203ENSMUST00000103021 3398 ntAPPRIS ALT2 TSL 1 (best) BASIC19.24■□□□□ 0.67
Sh3rf2Q8BZT2 Cenpb-201ENSMUST00000089510 4886 ntAPPRIS P1 BASIC19.24■□□□□ 0.67
Sh3rf2Q8BZT2 Macrod2-202ENSMUST00000078027 1669 ntAPPRIS P2 TSL 5 BASIC19.24■□□□□ 0.67
Sh3rf2Q8BZT2 Ube2d2a-202ENSMUST00000170693 2483 ntAPPRIS P1 TSL 1 (best) BASIC19.24■□□□□ 0.67
Sh3rf2Q8BZT2 Dmrta2-201ENSMUST00000061187 2922 ntAPPRIS P1 TSL 1 (best) BASIC19.24■□□□□ 0.67
Sh3rf2Q8BZT2 Nat9-201ENSMUST00000103038 1143 ntAPPRIS P1 TSL 1 (best) BASIC19.24■□□□□ 0.67
Sh3rf2Q8BZT2 Gm12527-201ENSMUST00000117967 564 ntBASIC19.24■□□□□ 0.67
Sh3rf2Q8BZT2 Vkorc1-202ENSMUST00000119922 387 ntTSL 3 BASIC19.24■□□□□ 0.67
Sh3rf2Q8BZT2 Mfap2-201ENSMUST00000071977 1073 ntAPPRIS P1 TSL 1 (best) BASIC19.24■□□□□ 0.67
Sh3rf2Q8BZT2 Gm10065-201ENSMUST00000076238 345 ntAPPRIS P1 BASIC19.24■□□□□ 0.67
Sh3rf2Q8BZT2 E030030I06Rik-202ENSMUST00000179054 2081 ntAPPRIS P4 TSL 1 (best) BASIC19.24■□□□□ 0.67
Sh3rf2Q8BZT2 Schip1-205ENSMUST00000182532 2059 ntTSL 1 (best) BASIC19.24■□□□□ 0.67
Sh3rf2Q8BZT2 Cdo1-201ENSMUST00000035804 1530 ntAPPRIS P1 TSL 1 (best) BASIC19.24■□□□□ 0.67
Sh3rf2Q8BZT2 Slc35a3-201ENSMUST00000029569 5725 ntAPPRIS P1 TSL 1 (best) BASIC19.24■□□□□ 0.67
Sh3rf2Q8BZT2 Aif1l-201ENSMUST00000001920 3117 ntAPPRIS P1 TSL 1 (best) BASIC19.24■□□□□ 0.67
Sh3rf2Q8BZT2 Magi3-201ENSMUST00000064371 6640 ntAPPRIS P3 TSL 1 (best) BASIC19.24■□□□□ 0.67
Sh3rf2Q8BZT2 Zfp105-201ENSMUST00000051667 2010 ntAPPRIS P1 TSL 1 (best) BASIC19.24■□□□□ 0.67
Sh3rf2Q8BZT2 Hoxc6-201ENSMUST00000001711 1581 ntAPPRIS P1 TSL 1 (best) BASIC19.23■□□□□ 0.67
Sh3rf2Q8BZT2 Hras-201ENSMUST00000026572 2828 ntAPPRIS P1 TSL 1 (best) BASIC19.23■□□□□ 0.67
Sh3rf2Q8BZT2 Srxn1-201ENSMUST00000041500 2812 ntAPPRIS P1 TSL 1 (best) BASIC19.23■□□□□ 0.67
Sh3rf2Q8BZT2 Gm26708-203ENSMUST00000208236 1624 ntTSL 5 BASIC19.23■□□□□ 0.67
Sh3rf2Q8BZT2 Adrb1-201ENSMUST00000038949 2491 ntAPPRIS P1 BASIC19.23■□□□□ 0.67
Sh3rf2Q8BZT2 Tsen54-202ENSMUST00000106481 1862 ntAPPRIS ALT2 TSL 1 (best) BASIC19.23■□□□□ 0.67
Sh3rf2Q8BZT2 2610035F20Rik-202ENSMUST00000177306 1149 ntTSL 1 (best) BASIC19.23■□□□□ 0.67
Sh3rf2Q8BZT2 2900042K21Rik-201ENSMUST00000194444 653 ntBASIC19.23■□□□□ 0.67
Sh3rf2Q8BZT2 1810059H22Rik-205ENSMUST00000204570 690 ntTSL 1 (best) BASIC19.23■□□□□ 0.67
Sh3rf2Q8BZT2 Tmem54-201ENSMUST00000030575 1064 ntTSL 1 (best) BASIC19.23■□□□□ 0.67
Sh3rf2Q8BZT2 Sphk1-203ENSMUST00000100201 1800 ntAPPRIS ALT2 TSL 1 (best) BASIC19.23■□□□□ 0.67
Sh3rf2Q8BZT2 9130221H12Rik-201ENSMUST00000169914 1465 ntTSL 1 (best) BASIC19.22■□□□□ 0.67
Sh3rf2Q8BZT2 Agtpbp1-222ENSMUST00000171606 3037 ntTSL 1 (best) BASIC19.22■□□□□ 0.67
Sh3rf2Q8BZT2 Kcne1l-201ENSMUST00000134825 1543 ntAPPRIS P1 BASIC19.22■□□□□ 0.67
Sh3rf2Q8BZT2 Bola3-207ENSMUST00000136501 2312 ntAPPRIS P1 TSL 1 (best) BASIC19.22■□□□□ 0.67
Sh3rf2Q8BZT2 1110004E09Rik-201ENSMUST00000023694 1143 ntAPPRIS P1 TSL 1 (best) BASIC19.22■□□□□ 0.67
Sh3rf2Q8BZT2 Psmd3-201ENSMUST00000017365 2148 ntAPPRIS P1 TSL 1 (best) BASIC19.22■□□□□ 0.67
Sh3rf2Q8BZT2 Stx4a-201ENSMUST00000033075 1456 ntAPPRIS P1 TSL 1 (best) BASIC19.22■□□□□ 0.67
Sh3rf2Q8BZT2 Cerk-201ENSMUST00000044332 4518 ntAPPRIS P1 TSL 1 (best) BASIC19.21■□□□□ 0.67
Sh3rf2Q8BZT2 Foxj3-209ENSMUST00000162267 1391 ntAPPRIS ALT2 TSL 1 (best) BASIC19.21■□□□□ 0.67
Sh3rf2Q8BZT2 Snapc2-201ENSMUST00000011981 1536 ntAPPRIS P1 TSL 1 (best) BASIC19.21■□□□□ 0.67
Sh3rf2Q8BZT2 Barx2-201ENSMUST00000116615 1968 ntAPPRIS P1 TSL 1 (best) BASIC19.21■□□□□ 0.67
Sh3rf2Q8BZT2 H19-202ENSMUST00000136359 2286 ntTSL 1 (best) BASIC19.21■□□□□ 0.67
Sh3rf2Q8BZT2 Aunip-201ENSMUST00000105866 1275 ntAPPRIS P1 TSL 1 (best) BASIC19.21■□□□□ 0.67
Sh3rf2Q8BZT2 Ndufb2-202ENSMUST00000119379 455 ntAPPRIS P1 TSL 1 (best) BASIC19.21■□□□□ 0.67
Sh3rf2Q8BZT2 AC123857.1-201ENSMUST00000181053 2312 ntTSL 1 (best) BASIC19.21■□□□□ 0.67
Sh3rf2Q8BZT2 Cd37-209ENSMUST00000211373 1428 ntAPPRIS ALT2 TSL 1 (best) BASIC19.21■□□□□ 0.67
Sh3rf2Q8BZT2 AC122769.4-201ENSMUST00000228166 901 ntBASIC19.21■□□□□ 0.67
Sh3rf2Q8BZT2 Lmtk3-201ENSMUST00000072580 4807 ntAPPRIS P2 TSL 1 (best) BASIC19.21■□□□□ 0.67
Sh3rf2Q8BZT2 Wtap-204ENSMUST00000159986 3187 ntTSL 1 (best) BASIC19.21■□□□□ 0.67
Sh3rf2Q8BZT2 Desi2-204ENSMUST00000161075 2590 ntTSL 1 (best) BASIC19.21■□□□□ 0.67
Sh3rf2Q8BZT2 1700065D16Rik-204ENSMUST00000189348 1540 ntTSL 2 BASIC19.2■□□□□ 0.66
Sh3rf2Q8BZT2 Gm37563-201ENSMUST00000192580 1513 ntBASIC19.2■□□□□ 0.66
Sh3rf2Q8BZT2 Wdr20-205ENSMUST00000193053 1351 ntTSL 1 (best) BASIC19.2■□□□□ 0.66
Sh3rf2Q8BZT2 Gm45640-201ENSMUST00000210665 1896 ntBASIC19.2■□□□□ 0.66
Sh3rf2Q8BZT2 Pigt-202ENSMUST00000117066 1712 ntAPPRIS ALT2 TSL 1 (best) BASIC19.2■□□□□ 0.66
Sh3rf2Q8BZT2 Gprc5c-201ENSMUST00000021071 2200 ntAPPRIS P3 TSL 1 (best) BASIC19.2■□□□□ 0.66
Sh3rf2Q8BZT2 5730522E02Rik-201ENSMUST00000109511 1162 ntAPPRIS P5 TSL 1 (best) BASIC19.2■□□□□ 0.66
Sh3rf2Q8BZT2 AC142113.1-201ENSMUST00000214931 801 ntTSL 5 BASIC19.2■□□□□ 0.66
Sh3rf2Q8BZT2 D130020L05Rik-202ENSMUST00000220889 769 ntTSL 3 BASIC19.2■□□□□ 0.66
Sh3rf2Q8BZT2 Smn1-201ENSMUST00000022147 1222 ntAPPRIS P1 TSL 1 (best) BASIC19.2■□□□□ 0.66
Sh3rf2Q8BZT2 Nt5c3b-204ENSMUST00000107398 1635 ntTSL 1 (best) BASIC19.2■□□□□ 0.66
Sh3rf2Q8BZT2 Henmt1-202ENSMUST00000098680 1466 ntAPPRIS ALT2 TSL 1 (best) BASIC19.2■□□□□ 0.66
Sh3rf2Q8BZT2 Lgmn-202ENSMUST00000110020 1835 ntAPPRIS P1 TSL 1 (best) BASIC19.2■□□□□ 0.66
Retrieved 100 of 76,532 protein–RNA pairs in 158 ms