Protein–RNA interactions for Protein: Q61069

Usf1, Upstream stimulatory factor 1, mousemouse

Predictions only

Length 310 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Usf1Q61069 Slbp-201ENSMUST00000057551 1906 ntAPPRIS P3 TSL 1 (best) BASIC17.32■□□□□ 0.36
Usf1Q61069 Tnnt2-202ENSMUST00000112085 1076 ntAPPRIS ALT2 TSL 5 BASIC17.32■□□□□ 0.36
Usf1Q61069 Tnnt2-203ENSMUST00000112086 1094 ntAPPRIS ALT2 TSL 5 BASIC17.32■□□□□ 0.36
Usf1Q61069 Tnnt2-204ENSMUST00000112087 1112 ntAPPRIS ALT2 TSL 5 BASIC17.32■□□□□ 0.36
Usf1Q61069 2900072N19Rik-201ENSMUST00000123840 806 ntTSL 1 (best) BASIC17.32■□□□□ 0.36
Usf1Q61069 Gm16120-201ENSMUST00000127990 808 ntTSL 1 (best) BASIC17.32■□□□□ 0.36
Usf1Q61069 Tnnt2-206ENSMUST00000178854 1076 ntAPPRIS ALT2 TSL 5 BASIC17.32■□□□□ 0.36
Usf1Q61069 Tnnt2-211ENSMUST00000189355 1112 ntAPPRIS ALT2 TSL 5 BASIC17.32■□□□□ 0.36
Usf1Q61069 Tnnt2-212ENSMUST00000189732 1123 ntAPPRIS ALT2 TSL 5 BASIC17.32■□□□□ 0.36
Usf1Q61069 Lamtor5-202ENSMUST00000199317 743 ntAPPRIS P1 TSL 1 (best) BASIC17.32■□□□□ 0.36
Usf1Q61069 Gm4969-202ENSMUST00000141380 1892 ntAPPRIS P1 TSL 5 BASIC17.32■□□□□ 0.36
Usf1Q61069 Dlg3-202ENSMUST00000087984 4956 ntAPPRIS P1 TSL 1 (best) BASIC17.32■□□□□ 0.36
Usf1Q61069 Coq9-201ENSMUST00000034234 1789 ntAPPRIS P1 TSL 1 (best) BASIC17.32■□□□□ 0.36
Usf1Q61069 Lhx2-203ENSMUST00000143783 1696 ntTSL 1 (best) BASIC17.32■□□□□ 0.36
Usf1Q61069 Zmym3-202ENSMUST00000117637 1593 ntTSL 1 (best) BASIC17.32■□□□□ 0.36
Usf1Q61069 Tmem80-206ENSMUST00000133012 1524 ntAPPRIS P1 TSL 1 (best) BASIC17.31■□□□□ 0.36
Usf1Q61069 Spsb3-204ENSMUST00000119829 1955 ntAPPRIS ALT2 TSL 2 BASIC17.31■□□□□ 0.36
Usf1Q61069 Edn2-201ENSMUST00000030384 1462 ntAPPRIS P1 TSL 1 (best) BASIC17.31■□□□□ 0.36
Usf1Q61069 Baiap2-205ENSMUST00000106233 2442 ntAPPRIS ALT2 TSL 5 BASIC17.31■□□□□ 0.36
Usf1Q61069 Chsy1-201ENSMUST00000036372 4176 ntAPPRIS P1 TSL 1 (best) BASIC17.31■□□□□ 0.36
Usf1Q61069 March11-203ENSMUST00000152841 1365 ntAPPRIS ALT2 TSL 1 (best) BASIC17.31■□□□□ 0.36
Usf1Q61069 Noa1-201ENSMUST00000047860 2288 ntAPPRIS P1 TSL 1 (best) BASIC17.31■□□□□ 0.36
Usf1Q61069 Unc5b-201ENSMUST00000077925 5869 ntAPPRIS P1 TSL 1 (best) BASIC17.31■□□□□ 0.36
Usf1Q61069 Gdf1-201ENSMUST00000207684 1349 ntAPPRIS P1 TSL 1 (best) BASIC17.31■□□□□ 0.36
Usf1Q61069 Ttc7b-201ENSMUST00000062957 3446 ntAPPRIS P1 TSL 1 (best) BASIC17.31■□□□□ 0.36
Usf1Q61069 Gm15378-201ENSMUST00000121894 207 ntBASIC17.31■□□□□ 0.36
Usf1Q61069 Gm10698-201ENSMUST00000182663 604 ntBASIC17.31■□□□□ 0.36
Usf1Q61069 Atp5c1-201ENSMUST00000026887 1060 ntAPPRIS ALT1 TSL 5 BASIC17.31■□□□□ 0.36
Usf1Q61069 Crybb1-201ENSMUST00000031286 882 ntAPPRIS P1 TSL 1 (best) BASIC17.31■□□□□ 0.36
Usf1Q61069 Fezf2-203ENSMUST00000224714 2429 ntAPPRIS P1 BASIC17.31■□□□□ 0.36
Usf1Q61069 Rfx5-205ENSMUST00000107260 2355 ntAPPRIS P1 TSL 5 BASIC17.31■□□□□ 0.36
Usf1Q61069 Gm13042-201ENSMUST00000119244 1955 ntBASIC17.31■□□□□ 0.36
Usf1Q61069 Tcf7-202ENSMUST00000109071 1742 ntAPPRIS P1 TSL 1 (best) BASIC17.3■□□□□ 0.36
Usf1Q61069 Tnfaip8l2-201ENSMUST00000013851 1122 ntAPPRIS P1 TSL 1 (best) BASIC17.3■□□□□ 0.36
Usf1Q61069 Gm12979-201ENSMUST00000145488 405 ntTSL 2 BASIC17.3■□□□□ 0.36
Usf1Q61069 Gm11527-201ENSMUST00000153795 596 ntTSL 2 BASIC17.3■□□□□ 0.36
Usf1Q61069 AI480526-205ENSMUST00000160255 1095 ntTSL 5 BASIC17.3■□□□□ 0.36
Usf1Q61069 Gm26971-201ENSMUST00000182423 1072 ntBASIC17.3■□□□□ 0.36
Usf1Q61069 Gm37055-201ENSMUST00000191866 133 ntBASIC17.3■□□□□ 0.36
Usf1Q61069 Arfip2-212ENSMUST00000209550 1141 ntAPPRIS ALT1 TSL 5 BASIC17.3■□□□□ 0.36
Usf1Q61069 Arfip2-214ENSMUST00000210911 938 ntTSL 5 BASIC17.3■□□□□ 0.36
Usf1Q61069 Wnk2-211ENSMUST00000162581 6628 ntAPPRIS ALT2 TSL 5 BASIC17.3■□□□□ 0.36
Usf1Q61069 Gpr160-202ENSMUST00000108258 2139 ntAPPRIS P1 TSL 1 (best) BASIC17.3■□□□□ 0.36
Usf1Q61069 Hey1-201ENSMUST00000042412 2423 ntAPPRIS P1 TSL 1 (best) BASIC17.3■□□□□ 0.36
Usf1Q61069 Tmem164-206ENSMUST00000112896 5224 ntAPPRIS P1 TSL 1 (best) BASIC17.3■□□□□ 0.36
Usf1Q61069 Atf5-202ENSMUST00000107893 1735 ntAPPRIS P1 TSL 1 (best) BASIC17.3■□□□□ 0.36
Usf1Q61069 Mpg-201ENSMUST00000020528 1737 ntAPPRIS P1 TSL 1 (best) BASIC17.3■□□□□ 0.36
Usf1Q61069 Gm45736-201ENSMUST00000210592 1352 ntAPPRIS P1 TSL 5 BASIC17.29■□□□□ 0.36
Usf1Q61069 Lrg1-201ENSMUST00000041357 1351 ntAPPRIS P1 TSL 1 (best) BASIC17.29■□□□□ 0.36
Usf1Q61069 Arid3c-202ENSMUST00000150809 1327 ntAPPRIS ALT2 TSL 1 (best) BASIC17.29■□□□□ 0.36
Usf1Q61069 Nipa1-201ENSMUST00000052204 3183 ntAPPRIS P1 TSL 1 (best) BASIC17.29■□□□□ 0.36
Usf1Q61069 Trim9-208ENSMUST00000221370 2393 ntTSL 1 (best) BASIC17.29■□□□□ 0.36
Usf1Q61069 Atp6v1b1-206ENSMUST00000206911 1591 ntTSL 1 (best) BASIC17.29■□□□□ 0.36
Usf1Q61069 Hck-202ENSMUST00000109799 2092 ntAPPRIS ALT2 TSL 1 (best) BASIC17.29■□□□□ 0.36
Usf1Q61069 Hck-203ENSMUST00000189688 2090 ntAPPRIS ALT2 TSL 1 (best) BASIC17.29■□□□□ 0.36
Usf1Q61069 Hck-201ENSMUST00000003370 2092 ntAPPRIS ALT2 TSL 1 (best) BASIC17.29■□□□□ 0.36
Usf1Q61069 Ypel1-201ENSMUST00000035682 3322 ntAPPRIS P1 TSL 1 (best) BASIC17.29■□□□□ 0.36
Usf1Q61069 Snca-201ENSMUST00000114268 1280 ntAPPRIS P1 TSL 1 (best) BASIC17.29■□□□□ 0.36
Usf1Q61069 Josd2-205ENSMUST00000120852 727 ntAPPRIS P1 TSL 3 BASIC17.29■□□□□ 0.36
Usf1Q61069 Gm16127-201ENSMUST00000131619 234 ntTSL 5 BASIC17.29■□□□□ 0.36
Usf1Q61069 Plpp1-202ENSMUST00000070951 1272 ntAPPRIS ALT2 TSL 1 (best) BASIC17.29■□□□□ 0.36
Usf1Q61069 Tor2a-201ENSMUST00000009707 1536 ntAPPRIS P1 TSL 1 (best) BASIC17.29■□□□□ 0.36
Usf1Q61069 Gnpnat1-201ENSMUST00000046191 2788 ntAPPRIS P1 TSL 1 (best) BASIC17.29■□□□□ 0.36
Usf1Q61069 Thap11-201ENSMUST00000040445 1819 ntAPPRIS P1 BASIC17.28■□□□□ 0.36
Usf1Q61069 Kif1bp-201ENSMUST00000065887 2472 ntAPPRIS P1 TSL 1 (best) BASIC17.28■□□□□ 0.36
Usf1Q61069 Mprip-201ENSMUST00000066330 7765 ntAPPRIS ALT2 TSL 5 BASIC17.28■□□□□ 0.36
Usf1Q61069 Gm16262-201ENSMUST00000162306 1751 ntTSL 1 (best) BASIC17.28■□□□□ 0.36
Usf1Q61069 Slc35a3-201ENSMUST00000029569 5725 ntAPPRIS P1 TSL 1 (best) BASIC17.28■□□□□ 0.36
Usf1Q61069 Adamts18-201ENSMUST00000093113 5642 ntAPPRIS P1 TSL 1 (best) BASIC17.28■□□□□ 0.36
Usf1Q61069 Slc35f4-201ENSMUST00000074368 1931 ntAPPRIS P1 TSL 1 (best) BASIC17.28■□□□□ 0.36
Usf1Q61069 Gm11643-201ENSMUST00000119578 864 ntBASIC17.28■□□□□ 0.36
Usf1Q61069 Tsen2-203ENSMUST00000130425 638 ntTSL 3 BASIC17.28■□□□□ 0.36
Usf1Q61069 Ost4-201ENSMUST00000132034 576 ntAPPRIS P1 TSL 1 (best) BASIC17.28■□□□□ 0.36
Usf1Q61069 Gm20390-201ENSMUST00000170303 991 ntAPPRIS P1 TSL 5 BASIC17.28■□□□□ 0.36
Usf1Q61069 Fitm1-201ENSMUST00000022826 971 ntAPPRIS P1 TSL 1 (best) BASIC17.28■□□□□ 0.36
Usf1Q61069 Grrp1-201ENSMUST00000060050 1226 ntAPPRIS P1 TSL 1 (best) BASIC17.28■□□□□ 0.36
Usf1Q61069 Tsc22d1-214ENSMUST00000177207 1476 ntTSL 3 BASIC17.28■□□□□ 0.36
Usf1Q61069 Stx4a-201ENSMUST00000033075 1456 ntAPPRIS P1 TSL 1 (best) BASIC17.28■□□□□ 0.36
Usf1Q61069 Sox12-202ENSMUST00000182625 4453 ntAPPRIS P1 BASIC17.28■□□□□ 0.36
Usf1Q61069 Ubl3-202ENSMUST00000164904 2001 ntAPPRIS P1 TSL 1 (best) BASIC17.28■□□□□ 0.36
Usf1Q61069 Gga1-201ENSMUST00000041587 3034 ntAPPRIS P1 TSL 1 (best) BASIC17.28■□□□□ 0.36
Usf1Q61069 Ank1-202ENSMUST00000084038 8147 ntAPPRIS P3 TSL 1 (best) BASIC17.28■□□□□ 0.36
Usf1Q61069 Etv4-212ENSMUST00000164750 2336 ntAPPRIS P3 TSL 1 (best) BASIC17.27■□□□□ 0.36
Usf1Q61069 Tmem230-206ENSMUST00000180286 1531 ntAPPRIS P1 TSL 2 BASIC17.27■□□□□ 0.36
Usf1Q61069 Slc35b3-209ENSMUST00000225432 2216 ntAPPRIS P3 BASIC17.27■□□□□ 0.36
Usf1Q61069 Gm2399-201ENSMUST00000104944 225 ntBASIC17.27■□□□□ 0.36
Usf1Q61069 Klf13-204ENSMUST00000185175 487 ntTSL 2 BASIC17.27■□□□□ 0.36
Usf1Q61069 AC122465.1-201ENSMUST00000220813 1209 ntTSL 1 (best) BASIC17.27■□□□□ 0.36
Usf1Q61069 Dxo-211ENSMUST00000180043 1447 ntAPPRIS P1 TSL 5 BASIC17.27■□□□□ 0.35
Usf1Q61069 Plk5-202ENSMUST00000105351 2100 ntAPPRIS ALT2 TSL 1 (best) BASIC17.27■□□□□ 0.35
Usf1Q61069 Plk5-201ENSMUST00000039836 2112 ntAPPRIS P3 TSL 2 BASIC17.27■□□□□ 0.35
Usf1Q61069 Cbx6-203ENSMUST00000109627 5806 ntAPPRIS P2 TSL 1 (best) BASIC17.27■□□□□ 0.35
Usf1Q61069 Mfsd4b2-201ENSMUST00000045526 2285 ntAPPRIS P1 TSL 1 (best) BASIC17.27■□□□□ 0.35
Usf1Q61069 Lgr4-201ENSMUST00000046548 5060 ntAPPRIS P1 TSL 2 BASIC17.27■□□□□ 0.35
Usf1Q61069 Gga2-201ENSMUST00000033160 4915 ntAPPRIS P1 TSL 1 (best) BASIC17.26■□□□□ 0.35
Usf1Q61069 1700065D16Rik-204ENSMUST00000189348 1540 ntTSL 2 BASIC17.26■□□□□ 0.35
Usf1Q61069 Slc10a3-201ENSMUST00000037967 2023 ntAPPRIS P2 TSL 1 (best) BASIC17.26■□□□□ 0.35
Usf1Q61069 Fip1l1-202ENSMUST00000113534 2140 ntAPPRIS ALT2 TSL 1 (best) BASIC17.26■□□□□ 0.35
Usf1Q61069 Ttc39a-203ENSMUST00000106619 1778 ntTSL 1 (best) BASIC17.26■□□□□ 0.35
Usf1Q61069 D1Ertd622e-203ENSMUST00000149927 2703 ntAPPRIS P1 TSL 1 (best) BASIC17.26■□□□□ 0.35
Retrieved 100 of 76,532 protein–RNA pairs in 48.3 ms