Protein–RNA interactions for Protein: Q04857

Col6a1, Collagen alpha-1(VI) chain, mousemouse

Predictions only

Length 1,025 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Col6a1Q04857 Fam207a-201ENSMUST00000045454 2394 ntAPPRIS P1 TSL 1 (best) BASIC20.95■□□□□ 0.94
Col6a1Q04857 Ccnd3-218ENSMUST00000183177 2060 ntAPPRIS P1 TSL 5 BASIC20.95■□□□□ 0.94
Col6a1Q04857 Rnf8-201ENSMUST00000024817 2077 ntAPPRIS P1 TSL 1 (best) BASIC20.95■□□□□ 0.94
Col6a1Q04857 Arhgap23-201ENSMUST00000093940 2409 ntTSL 1 (best) BASIC20.95■□□□□ 0.94
Col6a1Q04857 Hipk1-201ENSMUST00000029438 4185 ntAPPRIS P1 TSL 1 (best) BASIC20.95■□□□□ 0.94
Col6a1Q04857 Rbm38-201ENSMUST00000029014 1768 ntAPPRIS P1 TSL 1 (best) BASIC20.95■□□□□ 0.94
Col6a1Q04857 Calml3-201ENSMUST00000077698 1421 ntAPPRIS P1 BASIC20.95■□□□□ 0.94
Col6a1Q04857 Slc9a2-201ENSMUST00000027231 5019 ntAPPRIS P1 TSL 1 (best) BASIC20.95■□□□□ 0.94
Col6a1Q04857 Trp73os-201ENSMUST00000143429 2192 ntTSL 1 (best) BASIC20.95■□□□□ 0.94
Col6a1Q04857 Mal2-201ENSMUST00000025356 2950 ntAPPRIS P1 TSL 1 (best) BASIC20.94■□□□□ 0.94
Col6a1Q04857 Cdk13-201ENSMUST00000042365 5202 ntAPPRIS P2 TSL 1 (best) BASIC20.94■□□□□ 0.94
Col6a1Q04857 Sephs1-202ENSMUST00000115019 2933 ntAPPRIS P1 TSL 1 (best) BASIC20.94■□□□□ 0.94
Col6a1Q04857 Sap18-201ENSMUST00000111267 660 ntTSL 2 BASIC20.94■□□□□ 0.94
Col6a1Q04857 Serf1-204ENSMUST00000151821 570 ntTSL 2 BASIC20.94■□□□□ 0.94
Col6a1Q04857 AL672049.1-201ENSMUST00000197943 91 ntBASIC20.94■□□□□ 0.94
Col6a1Q04857 Fam50b-201ENSMUST00000039605 1229 ntAPPRIS P1 TSL 1 (best) BASIC20.94■□□□□ 0.94
Col6a1Q04857 Gtf2h2-201ENSMUST00000066940 1065 ntTSL 1 (best) BASIC20.94■□□□□ 0.94
Col6a1Q04857 Hist2h2ac-201ENSMUST00000090782 520 ntAPPRIS P1 BASIC20.94■□□□□ 0.94
Col6a1Q04857 Lsm12-201ENSMUST00000021297 2256 ntAPPRIS P1 TSL 1 (best) BASIC20.94■□□□□ 0.94
Col6a1Q04857 Gm37563-201ENSMUST00000192580 1513 ntBASIC20.94■□□□□ 0.94
Col6a1Q04857 Dalrd3-201ENSMUST00000019183 1746 ntAPPRIS P1 TSL 1 (best) BASIC20.93■□□□□ 0.94
Col6a1Q04857 Lamtor5-202ENSMUST00000199317 743 ntAPPRIS P1 TSL 1 (best) BASIC20.93■□□□□ 0.94
Col6a1Q04857 Cpne2-202ENSMUST00000109537 2121 ntAPPRIS ALT2 TSL 1 (best) BASIC20.93■□□□□ 0.94
Col6a1Q04857 AC152827.1-201ENSMUST00000221143 2189 ntBASIC20.93■□□□□ 0.94
Col6a1Q04857 Slc35a2-203ENSMUST00000115663 1527 ntAPPRIS P4 TSL 2 BASIC20.93■□□□□ 0.94
Col6a1Q04857 Paip1-201ENSMUST00000026520 2551 ntAPPRIS P3 TSL 1 (best) BASIC20.92■□□□□ 0.94
Col6a1Q04857 Bcl3-201ENSMUST00000120537 1850 ntAPPRIS P1 TSL 1 (best) BASIC20.92■□□□□ 0.94
Col6a1Q04857 Spint1-202ENSMUST00000110816 1913 ntAPPRIS P1 TSL 5 BASIC20.92■□□□□ 0.94
Col6a1Q04857 Stau2-217ENSMUST00000162751 3030 ntAPPRIS P1 TSL 1 (best) BASIC20.92■□□□□ 0.94
Col6a1Q04857 Kif27-203ENSMUST00000225388 5121 ntAPPRIS P1 BASIC20.92■□□□□ 0.94
Col6a1Q04857 Gm12896-201ENSMUST00000118430 226 ntBASIC20.92■□□□□ 0.94
Col6a1Q04857 Ccnd2-202ENSMUST00000201066 983 ntTSL 2 BASIC20.92■□□□□ 0.94
Col6a1Q04857 Thoc6-201ENSMUST00000047436 1504 ntAPPRIS P1 TSL 1 (best) BASIC20.92■□□□□ 0.94
Col6a1Q04857 Capzb-204ENSMUST00000102508 1674 ntAPPRIS ALT1 TSL 1 (best) BASIC20.92■□□□□ 0.94
Col6a1Q04857 Zbtb7a-203ENSMUST00000119606 1841 ntAPPRIS P1 TSL 1 (best) BASIC20.92■□□□□ 0.94
Col6a1Q04857 Dbf4-201ENSMUST00000002368 2401 ntAPPRIS ALT2 TSL 1 (best) BASIC20.92■□□□□ 0.94
Col6a1Q04857 L3mbtl4-201ENSMUST00000093007 2445 ntAPPRIS P1 TSL 5 BASIC20.92■□□□□ 0.94
Col6a1Q04857 Adrb1-201ENSMUST00000038949 2491 ntAPPRIS P1 BASIC20.92■□□□□ 0.94
Col6a1Q04857 Zfp777-202ENSMUST00000114583 3111 ntAPPRIS P3 TSL 5 BASIC20.91■□□□□ 0.94
Col6a1Q04857 Paqr6-204ENSMUST00000147991 1670 ntAPPRIS P1 TSL 1 (best) BASIC20.91■□□□□ 0.94
Col6a1Q04857 Gm13563-202ENSMUST00000150375 851 ntTSL 3 BASIC20.91■□□□□ 0.94
Col6a1Q04857 Dleu2-210ENSMUST00000183054 722 ntTSL 5 BASIC20.91■□□□□ 0.94
Col6a1Q04857 1810059H22Rik-205ENSMUST00000204570 690 ntTSL 1 (best) BASIC20.91■□□□□ 0.94
Col6a1Q04857 Ap4s1-201ENSMUST00000021338 1035 ntAPPRIS P1 TSL 1 (best) BASIC20.91■□□□□ 0.94
Col6a1Q04857 Lgi2-202ENSMUST00000199942 6273 ntAPPRIS ALT2 TSL 1 (best) BASIC20.91■□□□□ 0.94
Col6a1Q04857 Qsox2-201ENSMUST00000036187 2559 ntAPPRIS P1 TSL 5 BASIC20.91■□□□□ 0.94
Col6a1Q04857 Rfx8-202ENSMUST00000151913 2008 ntAPPRIS P1 TSL 1 (best) BASIC20.9■□□□□ 0.94
Col6a1Q04857 Rell2-202ENSMUST00000091932 1995 ntTSL 2 BASIC20.9■□□□□ 0.94
Col6a1Q04857 AC122428.2-201ENSMUST00000216321 1832 ntBASIC20.9■□□□□ 0.94
Col6a1Q04857 Wnt16-201ENSMUST00000031681 1663 ntAPPRIS P1 TSL 1 (best) BASIC20.9■□□□□ 0.94
Col6a1Q04857 Nrxn2-208ENSMUST00000137166 6314 ntAPPRIS ALT2 TSL 5 BASIC20.9■□□□□ 0.94
Col6a1Q04857 Pgap3-205ENSMUST00000128897 1264 ntTSL 5 BASIC20.9■□□□□ 0.94
Col6a1Q04857 Rex1bd-206ENSMUST00000136913 671 ntAPPRIS ALT2 TSL 5 BASIC20.9■□□□□ 0.94
Col6a1Q04857 Gm16998-201ENSMUST00000181899 1230 ntTSL 1 (best) BASIC20.9■□□□□ 0.94
Col6a1Q04857 Meg3-207ENSMUST00000143836 1896 ntTSL 1 (best) BASIC20.9■□□□□ 0.94
Col6a1Q04857 En2-201ENSMUST00000036177 3539 ntAPPRIS P1 TSL 1 (best) BASIC20.9■□□□□ 0.94
Col6a1Q04857 Supv3l1-201ENSMUST00000020273 2604 ntAPPRIS P1 TSL 1 (best) BASIC20.9■□□□□ 0.94
Col6a1Q04857 Ppm1n-201ENSMUST00000032560 1648 ntAPPRIS P1 TSL 1 (best) BASIC20.89■□□□□ 0.94
Col6a1Q04857 Psme4-201ENSMUST00000041231 6491 ntAPPRIS P1 TSL 1 (best) BASIC20.89■□□□□ 0.94
Col6a1Q04857 Syap1-201ENSMUST00000033723 2087 ntAPPRIS P1 TSL 1 (best) BASIC20.89■□□□□ 0.93
Col6a1Q04857 Wdr20-205ENSMUST00000193053 1351 ntTSL 1 (best) BASIC20.89■□□□□ 0.93
Col6a1Q04857 Gm11627-202ENSMUST00000107081 818 ntAPPRIS P1 TSL 2 BASIC20.89■□□□□ 0.93
Col6a1Q04857 Gm11643-201ENSMUST00000119578 864 ntBASIC20.89■□□□□ 0.93
Col6a1Q04857 Gm45890-201ENSMUST00000212043 1026 ntTSL 5 BASIC20.89■□□□□ 0.93
Col6a1Q04857 Tcf7l1-201ENSMUST00000069536 3042 ntAPPRIS P3 TSL 1 (best) BASIC20.89■□□□□ 0.93
Col6a1Q04857 Cfap36-201ENSMUST00000020754 1664 ntAPPRIS P1 TSL 1 (best) BASIC20.89■□□□□ 0.93
Col6a1Q04857 Gramd1a-202ENSMUST00000085636 2543 ntAPPRIS ALT2 TSL 5 BASIC20.88■□□□□ 0.93
Col6a1Q04857 Dedd-203ENSMUST00000111299 2322 ntAPPRIS P1 TSL 1 (best) BASIC20.88■□□□□ 0.93
Col6a1Q04857 Naxd-201ENSMUST00000033901 1359 ntTSL 2 BASIC20.88■□□□□ 0.93
Col6a1Q04857 Gnas-205ENSMUST00000109083 730 ntTSL 2 BASIC20.88■□□□□ 0.93
Col6a1Q04857 Tnnt2-202ENSMUST00000112085 1076 ntAPPRIS ALT2 TSL 5 BASIC20.88■□□□□ 0.93
Col6a1Q04857 Tnnt2-203ENSMUST00000112086 1094 ntAPPRIS ALT2 TSL 5 BASIC20.88■□□□□ 0.93
Col6a1Q04857 Tnnt2-204ENSMUST00000112087 1112 ntAPPRIS ALT2 TSL 5 BASIC20.88■□□□□ 0.93
Col6a1Q04857 Tnnt2-206ENSMUST00000178854 1076 ntAPPRIS ALT2 TSL 5 BASIC20.88■□□□□ 0.93
Col6a1Q04857 Tnnt2-211ENSMUST00000189355 1112 ntAPPRIS ALT2 TSL 5 BASIC20.88■□□□□ 0.93
Col6a1Q04857 Tnnt2-212ENSMUST00000189732 1123 ntAPPRIS ALT2 TSL 5 BASIC20.88■□□□□ 0.93
Col6a1Q04857 Jsrp1-201ENSMUST00000020435 955 ntAPPRIS ALT2 TSL 2 BASIC20.88■□□□□ 0.93
Col6a1Q04857 Vkorc1-203ENSMUST00000206053 606 ntTSL 3 BASIC20.88■□□□□ 0.93
Col6a1Q04857 Aprt-204ENSMUST00000212093 723 ntTSL 2 BASIC20.88■□□□□ 0.93
Col6a1Q04857 Ccdc107-201ENSMUST00000030181 817 ntAPPRIS P2 TSL 1 (best) BASIC20.88■□□□□ 0.93
Col6a1Q04857 Mrps10-201ENSMUST00000060752 1109 ntTSL 5 BASIC20.88■□□□□ 0.93
Col6a1Q04857 Hist2h2aa2-201ENSMUST00000074976 528 ntAPPRIS P1 BASIC20.88■□□□□ 0.93
Col6a1Q04857 Hist2h2aa1-201ENSMUST00000078756 586 ntAPPRIS P1 BASIC20.88■□□□□ 0.93
Col6a1Q04857 Nat14-201ENSMUST00000047309 1612 ntAPPRIS P1 TSL 1 (best) BASIC20.88■□□□□ 0.93
Col6a1Q04857 Golph3-202ENSMUST00000226517 2359 ntBASIC20.88■□□□□ 0.93
Col6a1Q04857 Atp6v1b1-206ENSMUST00000206911 1591 ntTSL 1 (best) BASIC20.88■□□□□ 0.93
Col6a1Q04857 Mmp24-201ENSMUST00000029141 4306 ntAPPRIS P1 TSL 1 (best) BASIC20.88■□□□□ 0.93
Col6a1Q04857 Hira-201ENSMUST00000004222 4218 ntAPPRIS P1 TSL 1 (best) BASIC20.88■□□□□ 0.93
Col6a1Q04857 Snapc2-201ENSMUST00000011981 1536 ntAPPRIS P1 TSL 1 (best) BASIC20.88■□□□□ 0.93
Col6a1Q04857 Iqck-206ENSMUST00000208658 2891 ntBASIC20.87■□□□□ 0.93
Col6a1Q04857 Csrp2-201ENSMUST00000020403 1384 ntAPPRIS P1 TSL 1 (best) BASIC20.87■□□□□ 0.93
Col6a1Q04857 Hoxb6-202ENSMUST00000173432 1964 ntAPPRIS P1 TSL 5 BASIC20.87■□□□□ 0.93
Col6a1Q04857 Vgf-202ENSMUST00000186451 2277 ntAPPRIS P1 TSL 5 BASIC20.87■□□□□ 0.93
Col6a1Q04857 Gm42911-201ENSMUST00000199360 1630 ntBASIC20.87■□□□□ 0.93
Col6a1Q04857 Fpgs-201ENSMUST00000028148 2273 ntAPPRIS P1 TSL 1 (best) BASIC20.87■□□□□ 0.93
Col6a1Q04857 Gyg-201ENSMUST00000118015 1922 ntAPPRIS ALT2 TSL 1 (best) BASIC20.87■□□□□ 0.93
Col6a1Q04857 Pdcd2-205ENSMUST00000154293 1924 ntTSL 1 (best) BASIC20.87■□□□□ 0.93
Col6a1Q04857 Gm15565-201ENSMUST00000118890 427 ntBASIC20.87■□□□□ 0.93
Col6a1Q04857 Rnf208-201ENSMUST00000060818 1137 ntAPPRIS P1 TSL 1 (best) BASIC20.87■□□□□ 0.93
Col6a1Q04857 Zfp580-201ENSMUST00000069324 1096 ntAPPRIS P2 TSL 1 (best) BASIC20.87■□□□□ 0.93
Retrieved 100 of 76,532 protein–RNA pairs in 21.3 ms