Protein–RNA interactions for Protein: Q8R1F9

Rpp40, Ribonuclease P protein subunit p40, mousemouse

Predictions only

Length 363 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Rpp40Q8R1F9 Unc50-201ENSMUST00000027285 1414 ntAPPRIS P1 TSL 1 (best) BASIC20.47■□□□□ 0.87
Rpp40Q8R1F9 Rchy1-201ENSMUST00000031345 1967 ntAPPRIS P1 TSL 1 (best) BASIC20.47■□□□□ 0.87
Rpp40Q8R1F9 Nfe2l3-203ENSMUST00000160133 1125 ntTSL 1 (best) BASIC20.47■□□□□ 0.87
Rpp40Q8R1F9 Rian-206ENSMUST00000182119 329 ntTSL 3 BASIC20.47■□□□□ 0.87
Rpp40Q8R1F9 Plin1-202ENSMUST00000178257 1841 ntAPPRIS P1 TSL 1 (best) BASIC20.47■□□□□ 0.87
Rpp40Q8R1F9 Dcbld1-201ENSMUST00000069004 3024 ntAPPRIS P1 TSL 1 (best) BASIC20.47■□□□□ 0.87
Rpp40Q8R1F9 Mvb12b-201ENSMUST00000041555 4998 ntAPPRIS P1 TSL 1 (best) BASIC20.47■□□□□ 0.87
Rpp40Q8R1F9 H19-202ENSMUST00000136359 2286 ntTSL 1 (best) BASIC20.46■□□□□ 0.87
Rpp40Q8R1F9 Tmem54-203ENSMUST00000106064 1066 ntAPPRIS P3 TSL 1 (best) BASIC20.46■□□□□ 0.87
Rpp40Q8R1F9 Stx6-209ENSMUST00000195302 955 ntTSL 1 (best) BASIC20.46■□□□□ 0.87
Rpp40Q8R1F9 Gm45121-201ENSMUST00000205396 1153 ntTSL 5 BASIC20.46■□□□□ 0.87
Rpp40Q8R1F9 Hoxa10-202ENSMUST00000125581 2565 ntTSL 1 (best) BASIC20.46■□□□□ 0.87
Rpp40Q8R1F9 Golph3-202ENSMUST00000226517 2359 ntBASIC20.46■□□□□ 0.87
Rpp40Q8R1F9 Neo1-202ENSMUST00000214547 5414 ntAPPRIS ALT2 TSL 1 (best) BASIC20.46■□□□□ 0.87
Rpp40Q8R1F9 Krt24-201ENSMUST00000017255 1847 ntAPPRIS P1 TSL 1 (best) BASIC20.46■□□□□ 0.87
Rpp40Q8R1F9 Slc25a4-201ENSMUST00000034049 1925 ntAPPRIS P1 TSL 1 (best) BASIC20.45■□□□□ 0.86
Rpp40Q8R1F9 Lgi2-202ENSMUST00000199942 6273 ntAPPRIS ALT2 TSL 1 (best) BASIC20.45■□□□□ 0.86
Rpp40Q8R1F9 1700003E16Rik-201ENSMUST00000032106 2020 ntAPPRIS P1 TSL 5 BASIC20.45■□□□□ 0.86
Rpp40Q8R1F9 Slc35a2-203ENSMUST00000115663 1527 ntAPPRIS P4 TSL 2 BASIC20.45■□□□□ 0.86
Rpp40Q8R1F9 Zfp444-202ENSMUST00000108565 849 ntTSL 3 BASIC20.45■□□□□ 0.86
Rpp40Q8R1F9 Speg-206ENSMUST00000122266 917 ntTSL 1 (best) BASIC20.45■□□□□ 0.86
Rpp40Q8R1F9 Tmem234-215ENSMUST00000173758 453 ntTSL 2 BASIC20.45■□□□□ 0.86
Rpp40Q8R1F9 Med30-201ENSMUST00000037115 1007 ntAPPRIS P1 TSL 1 (best) BASIC20.45■□□□□ 0.86
Rpp40Q8R1F9 Snrpc-201ENSMUST00000071006 870 ntAPPRIS P1 TSL 1 (best) BASIC20.45■□□□□ 0.86
Rpp40Q8R1F9 Adgrv1-211ENSMUST00000146749 1592 ntTSL 1 (best) BASIC20.45■□□□□ 0.86
Rpp40Q8R1F9 Cacna2d2-205ENSMUST00000168532 5807 ntAPPRIS ALT2 TSL 1 (best) BASIC20.45■□□□□ 0.86
Rpp40Q8R1F9 Gfi1-203ENSMUST00000159164 2648 ntAPPRIS P3 TSL 1 (best) BASIC20.44■□□□□ 0.86
Rpp40Q8R1F9 Mgat2-201ENSMUST00000060579 2614 ntAPPRIS P1 BASIC20.44■□□□□ 0.86
Rpp40Q8R1F9 Plekha1-211ENSMUST00000151119 2397 ntTSL 1 (best) BASIC20.44■□□□□ 0.86
Rpp40Q8R1F9 Strn3-201ENSMUST00000013130 3046 ntAPPRIS P1 TSL 1 (best) BASIC20.44■□□□□ 0.86
Rpp40Q8R1F9 A730056A06Rik-202ENSMUST00000206959 526 ntTSL 3 BASIC20.44■□□□□ 0.86
Rpp40Q8R1F9 Gm26571-205ENSMUST00000223215 591 ntTSL 3 BASIC20.44■□□□□ 0.86
Rpp40Q8R1F9 Tmem53-201ENSMUST00000062824 991 ntAPPRIS P1 TSL 1 (best) BASIC20.44■□□□□ 0.86
Rpp40Q8R1F9 Cbfb-202ENSMUST00000109392 2891 ntAPPRIS ALT1 TSL 1 (best) BASIC20.44■□□□□ 0.86
Rpp40Q8R1F9 Ltk-202ENSMUST00000082130 2767 ntAPPRIS ALT2 TSL 1 (best) BASIC20.44■□□□□ 0.86
Rpp40Q8R1F9 Ciapin1-201ENSMUST00000034233 1807 ntAPPRIS P1 TSL 5 BASIC20.43■□□□□ 0.86
Rpp40Q8R1F9 Slc11a1-211ENSMUST00000187516 1893 ntAPPRIS ALT2 TSL 5 BASIC20.43■□□□□ 0.86
Rpp40Q8R1F9 AC123857.1-201ENSMUST00000181053 2312 ntTSL 1 (best) BASIC20.43■□□□□ 0.86
Rpp40Q8R1F9 En2-201ENSMUST00000036177 3539 ntAPPRIS P1 TSL 1 (best) BASIC20.43■□□□□ 0.86
Rpp40Q8R1F9 A830035A12Rik-201ENSMUST00000147445 861 ntTSL 1 (best) BASIC20.43■□□□□ 0.86
Rpp40Q8R1F9 4930413G21Rik-201ENSMUST00000205998 993 ntBASIC20.43■□□□□ 0.86
Rpp40Q8R1F9 C230062I16Rik-202ENSMUST00000207746 1022 ntTSL 1 (best) BASIC20.43■□□□□ 0.86
Rpp40Q8R1F9 E030030I06Rik-201ENSMUST00000069372 876 ntAPPRIS ALT2 TSL 1 (best) BASIC20.43■□□□□ 0.86
Rpp40Q8R1F9 Smad2-205ENSMUST00000168423 2857 ntAPPRIS P3 TSL 1 (best) BASIC20.43■□□□□ 0.86
Rpp40Q8R1F9 Runx1-203ENSMUST00000168195 1985 ntAPPRIS ALT2 TSL 1 (best) BASIC20.43■□□□□ 0.86
Rpp40Q8R1F9 Scn1b-203ENSMUST00000211945 1501 ntAPPRIS P1 TSL 5 BASIC20.43■□□□□ 0.86
Rpp40Q8R1F9 Rora-202ENSMUST00000113624 2591 ntAPPRIS P1 TSL 1 (best) BASIC20.42■□□□□ 0.86
Rpp40Q8R1F9 Ift57-201ENSMUST00000046777 2601 ntAPPRIS P1 TSL 1 (best) BASIC20.42■□□□□ 0.86
Rpp40Q8R1F9 9430060I03Rik-201ENSMUST00000191563 1689 ntTSL 1 (best) BASIC20.42■□□□□ 0.86
Rpp40Q8R1F9 Cwh43-202ENSMUST00000065543 2316 ntTSL 1 (best) BASIC20.42■□□□□ 0.86
Rpp40Q8R1F9 Sept7-201ENSMUST00000115272 2533 ntAPPRIS ALT1 TSL 5 BASIC20.42■□□□□ 0.86
Rpp40Q8R1F9 Gm11627-201ENSMUST00000107080 585 ntAPPRIS P1 TSL 1 (best) BASIC20.42■□□□□ 0.86
Rpp40Q8R1F9 Psmb5-201ENSMUST00000022803 899 ntAPPRIS P1 TSL 1 (best) BASIC20.42■□□□□ 0.86
Rpp40Q8R1F9 Fcrlb-201ENSMUST00000094337 1284 ntAPPRIS P1 TSL 1 (best) BASIC20.42■□□□□ 0.86
Rpp40Q8R1F9 Gm43545-201ENSMUST00000196765 2779 ntBASIC20.41■□□□□ 0.86
Rpp40Q8R1F9 Zfp3-201ENSMUST00000060444 2061 ntAPPRIS P1 TSL 1 (best) BASIC20.41■□□□□ 0.86
Rpp40Q8R1F9 S100a6-201ENSMUST00000001051 731 ntAPPRIS P1 TSL 1 (best) BASIC20.41■□□□□ 0.86
Rpp40Q8R1F9 Mpig6b-202ENSMUST00000174190 729 ntAPPRIS P1 TSL 1 (best) BASIC20.41■□□□□ 0.86
Rpp40Q8R1F9 Gm44732-201ENSMUST00000208055 635 ntTSL 3 BASIC20.41■□□□□ 0.86
Rpp40Q8R1F9 Gm44899-202ENSMUST00000209433 511 ntTSL 5 BASIC20.41■□□□□ 0.86
Rpp40Q8R1F9 Numbl-201ENSMUST00000079258 2760 ntAPPRIS P1 TSL 1 (best) BASIC20.41■□□□□ 0.86
Rpp40Q8R1F9 Dao-201ENSMUST00000086599 1525 ntTSL 1 (best) BASIC20.41■□□□□ 0.86
Rpp40Q8R1F9 Lfng-201ENSMUST00000031555 2305 ntAPPRIS P1 TSL 1 (best) BASIC20.41■□□□□ 0.86
Rpp40Q8R1F9 Cadps-202ENSMUST00000112657 5455 ntAPPRIS ALT2 TSL 5 BASIC20.4■□□□□ 0.86
Rpp40Q8R1F9 Gm20634-201ENSMUST00000090779 2956 ntBASIC20.4■□□□□ 0.86
Rpp40Q8R1F9 Gdf11-201ENSMUST00000026408 4062 ntAPPRIS P1 TSL 1 (best) BASIC20.4■□□□□ 0.86
Rpp40Q8R1F9 Gm15155-201ENSMUST00000112542 1009 ntAPPRIS P1 TSL 1 (best) BASIC20.4■□□□□ 0.86
Rpp40Q8R1F9 Snhg6-203ENSMUST00000182580 473 ntTSL 1 (best) BASIC20.4■□□□□ 0.86
Rpp40Q8R1F9 Gm6420-201ENSMUST00000193885 723 ntBASIC20.4■□□□□ 0.86
Rpp40Q8R1F9 Gab1-201ENSMUST00000034150 4870 ntAPPRIS P1 TSL 1 (best) BASIC20.4■□□□□ 0.86
Rpp40Q8R1F9 Jkamp-201ENSMUST00000057257 1292 ntAPPRIS P3 TSL 1 (best) BASIC20.4■□□□□ 0.86
Rpp40Q8R1F9 Gm10655-201ENSMUST00000098658 1397 ntBASIC20.4■□□□□ 0.86
Rpp40Q8R1F9 Ptpmt1-203ENSMUST00000125001 3183 ntTSL 1 (best) BASIC20.4■□□□□ 0.86
Rpp40Q8R1F9 Aif1l-201ENSMUST00000001920 3117 ntAPPRIS P1 TSL 1 (best) BASIC20.4■□□□□ 0.86
Rpp40Q8R1F9 Agap2-202ENSMUST00000217941 5573 ntAPPRIS ALT2 TSL 1 (best) BASIC20.4■□□□□ 0.86
Rpp40Q8R1F9 Trim72-202ENSMUST00000106248 2134 ntAPPRIS P1 TSL 5 BASIC20.39■□□□□ 0.86
Rpp40Q8R1F9 Gm5540-201ENSMUST00000131852 1848 ntBASIC20.39■□□□□ 0.86
Rpp40Q8R1F9 Nespas-201ENSMUST00000143738 1083 ntBASIC20.39■□□□□ 0.85
Rpp40Q8R1F9 Gm4881-201ENSMUST00000206705 1152 ntAPPRIS P1 TSL 5 BASIC20.39■□□□□ 0.85
Rpp40Q8R1F9 Gm39115-201ENSMUST00000211350 699 ntAPPRIS P1 BASIC20.39■□□□□ 0.85
Rpp40Q8R1F9 Gas2l1-203ENSMUST00000109895 2530 ntAPPRIS P3 TSL 1 (best) BASIC20.39■□□□□ 0.85
Rpp40Q8R1F9 Fpgs-201ENSMUST00000028148 2273 ntAPPRIS P1 TSL 1 (best) BASIC20.39■□□□□ 0.85
Rpp40Q8R1F9 Psmd3-201ENSMUST00000017365 2148 ntAPPRIS P1 TSL 1 (best) BASIC20.39■□□□□ 0.85
Rpp40Q8R1F9 Gpc3-202ENSMUST00000114857 1880 ntTSL 1 (best) BASIC20.39■□□□□ 0.85
Rpp40Q8R1F9 Slc35d3-201ENSMUST00000059805 2630 ntAPPRIS P1 TSL 1 (best) BASIC20.39■□□□□ 0.85
Rpp40Q8R1F9 Khdc3-201ENSMUST00000034737 1681 ntAPPRIS P3 TSL 1 (best) BASIC20.38■□□□□ 0.85
Rpp40Q8R1F9 Nhlh1-201ENSMUST00000059794 2464 ntAPPRIS P1 TSL 1 (best) BASIC20.38■□□□□ 0.85
Rpp40Q8R1F9 Gm12524-201ENSMUST00000143109 1583 ntTSL 1 (best) BASIC20.38■□□□□ 0.85
Rpp40Q8R1F9 Gmpr-201ENSMUST00000000260 1580 ntAPPRIS P1 TSL 1 (best) BASIC20.38■□□□□ 0.85
Rpp40Q8R1F9 E130307A14Rik-208ENSMUST00000145971 830 ntTSL 3 BASIC20.38■□□□□ 0.85
Rpp40Q8R1F9 Mrpl52-204ENSMUST00000199195 463 ntTSL 1 (best) BASIC20.38■□□□□ 0.85
Rpp40Q8R1F9 Wasl-202ENSMUST00000041737 1298 ntTSL 1 (best) BASIC20.38■□□□□ 0.85
Rpp40Q8R1F9 Cystm1-201ENSMUST00000050584 831 ntAPPRIS ALT2 TSL 1 (best) BASIC20.38■□□□□ 0.85
Rpp40Q8R1F9 Pop5-201ENSMUST00000081497 1025 ntAPPRIS P1 TSL 5 BASIC20.38■□□□□ 0.85
Rpp40Q8R1F9 Lgmn-202ENSMUST00000110020 1835 ntAPPRIS P1 TSL 1 (best) BASIC20.38■□□□□ 0.85
Rpp40Q8R1F9 Csnk1a1-210ENSMUST00000170862 2259 ntAPPRIS ALT1 TSL 5 BASIC20.38■□□□□ 0.85
Rpp40Q8R1F9 Cstf2-202ENSMUST00000113286 2717 ntTSL 1 (best) BASIC20.38■□□□□ 0.85
Rpp40Q8R1F9 Cnbp-208ENSMUST00000204653 2175 ntTSL 1 (best) BASIC20.38■□□□□ 0.85
Rpp40Q8R1F9 Cnbp-201ENSMUST00000032138 2178 ntTSL 1 (best) BASIC20.38■□□□□ 0.85
Rpp40Q8R1F9 Zbtb7c-202ENSMUST00000167921 2147 ntAPPRIS P1 TSL 1 (best) BASIC20.38■□□□□ 0.85
Retrieved 100 of 76,532 protein–RNA pairs in 36.1 ms