Protein–RNA interactions for Protein: Q8CEI3

Ccdc28a, Coiled-coil domain-containing 28A, mousemouse

Predictions only

Length 192 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Ccdc28aQ8CEI3 Mex3b-201ENSMUST00000082237 3355 ntAPPRIS P1 TSL 2 BASIC20.07■□□□□ 0.8
Ccdc28aQ8CEI3 Irx5-201ENSMUST00000034184 2450 ntAPPRIS P1 TSL 1 (best) BASIC20.07■□□□□ 0.8
Ccdc28aQ8CEI3 Faim-202ENSMUST00000112911 803 ntAPPRIS ALT1 TSL 2 BASIC20.07■□□□□ 0.8
Ccdc28aQ8CEI3 Rab4b-201ENSMUST00000093040 1192 ntAPPRIS P1 TSL 1 (best) BASIC20.07■□□□□ 0.8
Ccdc28aQ8CEI3 Tmem245-202ENSMUST00000107609 2643 ntAPPRIS P2 TSL 5 BASIC20.07■□□□□ 0.8
Ccdc28aQ8CEI3 Smap1-201ENSMUST00000027339 2289 ntAPPRIS P1 TSL 1 (best) BASIC20.07■□□□□ 0.8
Ccdc28aQ8CEI3 2810474O19Rik-201ENSMUST00000046689 6066 ntAPPRIS P2 TSL 1 (best) BASIC20.07■□□□□ 0.8
Ccdc28aQ8CEI3 St7l-201ENSMUST00000059271 5728 ntAPPRIS P3 TSL 1 (best) BASIC20.07■□□□□ 0.8
Ccdc28aQ8CEI3 Pkp4-210ENSMUST00000168631 4484 ntAPPRIS ALT1 TSL 1 (best) BASIC20.07■□□□□ 0.8
Ccdc28aQ8CEI3 Mchr1-201ENSMUST00000166855 2188 ntAPPRIS P1 TSL 1 (best) BASIC20.07■□□□□ 0.8
Ccdc28aQ8CEI3 Fzd5-202ENSMUST00000116133 2895 ntAPPRIS P1 TSL 1 (best) BASIC20.06■□□□□ 0.8
Ccdc28aQ8CEI3 Fbxw2-206ENSMUST00000113080 1923 ntAPPRIS P1 TSL 1 (best) BASIC20.06■□□□□ 0.8
Ccdc28aQ8CEI3 Fam129b-201ENSMUST00000028135 3714 ntAPPRIS P1 TSL 1 (best) BASIC20.06■□□□□ 0.8
Ccdc28aQ8CEI3 Lypla2-202ENSMUST00000105852 1588 ntAPPRIS P1 TSL 1 (best) BASIC20.06■□□□□ 0.8
Ccdc28aQ8CEI3 Kras-202ENSMUST00000111710 1194 ntTSL 5 BASIC20.06■□□□□ 0.8
Ccdc28aQ8CEI3 2310061I04Rik-203ENSMUST00000148482 1193 ntTSL 1 (best) BASIC20.06■□□□□ 0.8
Ccdc28aQ8CEI3 Crhr1-201ENSMUST00000093925 2460 ntAPPRIS P1 TSL 1 (best) BASIC20.06■□□□□ 0.8
Ccdc28aQ8CEI3 Mcu-202ENSMUST00000020312 2872 ntAPPRIS P1 TSL 5 BASIC20.06■□□□□ 0.8
Ccdc28aQ8CEI3 Tob1-201ENSMUST00000041589 2288 ntAPPRIS P1 TSL 1 (best) BASIC20.06■□□□□ 0.8
Ccdc28aQ8CEI3 Tmbim1-201ENSMUST00000016309 2378 ntAPPRIS P1 TSL 1 (best) BASIC20.06■□□□□ 0.8
Ccdc28aQ8CEI3 Gm9885-202ENSMUST00000186234 2209 ntBASIC20.06■□□□□ 0.8
Ccdc28aQ8CEI3 Csf1-203ENSMUST00000120243 2097 ntAPPRIS P3 TSL 1 (best) BASIC20.06■□□□□ 0.8
Ccdc28aQ8CEI3 Gm4737-201ENSMUST00000059524 2093 ntAPPRIS P1 BASIC20.06■□□□□ 0.8
Ccdc28aQ8CEI3 Jag1-201ENSMUST00000028735 5612 ntAPPRIS P1 TSL 1 (best) BASIC20.05■□□□□ 0.8
Ccdc28aQ8CEI3 Gm38342-201ENSMUST00000195710 2980 ntBASIC20.05■□□□□ 0.8
Ccdc28aQ8CEI3 Sorcs2-201ENSMUST00000037370 5707 ntAPPRIS P1 TSL 1 (best) BASIC20.05■□□□□ 0.8
Ccdc28aQ8CEI3 Shc2-201ENSMUST00000020564 3243 ntAPPRIS P1 TSL 5 BASIC20.05■□□□□ 0.8
Ccdc28aQ8CEI3 D16Ertd472e-202ENSMUST00000114219 1576 ntAPPRIS P1 TSL 1 (best) BASIC20.05■□□□□ 0.8
Ccdc28aQ8CEI3 4930439D14Rik-201ENSMUST00000186765 359 ntBASIC20.05■□□□□ 0.8
Ccdc28aQ8CEI3 Cd47-201ENSMUST00000084838 5277 ntAPPRIS P1 TSL 1 (best) BASIC20.05■□□□□ 0.8
Ccdc28aQ8CEI3 Cacnb3-201ENSMUST00000003442 2819 ntAPPRIS P1 TSL 1 (best) BASIC20.05■□□□□ 0.8
Ccdc28aQ8CEI3 Nubp1-201ENSMUST00000023146 2121 ntAPPRIS P1 TSL 1 (best) BASIC20.05■□□□□ 0.8
Ccdc28aQ8CEI3 Kcns3-201ENSMUST00000055673 2933 ntAPPRIS P1 TSL 1 (best) BASIC20.04■□□□□ 0.8
Ccdc28aQ8CEI3 Mtmr14-201ENSMUST00000113146 2676 ntAPPRIS P2 TSL 1 (best) BASIC20.04■□□□□ 0.8
Ccdc28aQ8CEI3 Chmp7-201ENSMUST00000036381 2649 ntAPPRIS P1 TSL 1 (best) BASIC20.04■□□□□ 0.8
Ccdc28aQ8CEI3 Pno1-201ENSMUST00000020317 1544 ntAPPRIS P1 TSL 1 (best) BASIC20.04■□□□□ 0.8
Ccdc28aQ8CEI3 Gm11586-201ENSMUST00000123060 566 ntTSL 2 BASIC20.04■□□□□ 0.8
Ccdc28aQ8CEI3 Alyref2-201ENSMUST00000081527 1273 ntAPPRIS P1 BASIC20.04■□□□□ 0.8
Ccdc28aQ8CEI3 Rabgap1l-201ENSMUST00000028049 2748 ntAPPRIS P1 TSL 1 (best) BASIC20.04■□□□□ 0.8
Ccdc28aQ8CEI3 Matk-204ENSMUST00000120265 1618 ntAPPRIS ALT2 TSL 5 BASIC20.04■□□□□ 0.8
Ccdc28aQ8CEI3 Phf23-204ENSMUST00000133485 1607 ntTSL 5 BASIC20.04■□□□□ 0.8
Ccdc28aQ8CEI3 Mprip-203ENSMUST00000108751 4021 ntAPPRIS ALT2 TSL 1 (best) BASIC20.04■□□□□ 0.8
Ccdc28aQ8CEI3 Hsdl1-201ENSMUST00000036049 3141 ntAPPRIS P1 TSL 1 (best) BASIC20.04■□□□□ 0.8
Ccdc28aQ8CEI3 Plin1-201ENSMUST00000032762 1916 ntAPPRIS P1 TSL 5 BASIC20.04■□□□□ 0.8
Ccdc28aQ8CEI3 Tmem260-209ENSMUST00000226422 6333 ntAPPRIS ALT2 BASIC20.04■□□□□ 0.8
Ccdc28aQ8CEI3 Kcng3-201ENSMUST00000051482 3356 ntAPPRIS P1 TSL 1 (best) BASIC20.03■□□□□ 0.8
Ccdc28aQ8CEI3 Nipa2-202ENSMUST00000117812 3039 ntAPPRIS P1 TSL 2 BASIC20.03■□□□□ 0.8
Ccdc28aQ8CEI3 Mfsd14a-201ENSMUST00000029570 2782 ntAPPRIS P1 TSL 1 (best) BASIC20.03■□□□□ 0.8
Ccdc28aQ8CEI3 Gfi1-201ENSMUST00000031205 2860 ntAPPRIS P3 TSL 1 (best) BASIC20.03■□□□□ 0.8
Ccdc28aQ8CEI3 Dnpep-204ENSMUST00000185797 2510 ntAPPRIS ALT2 TSL 1 (best) BASIC20.03■□□□□ 0.8
Ccdc28aQ8CEI3 Kcnma1-215ENSMUST00000190339 890 ntTSL 5 BASIC20.03■□□□□ 0.8
Ccdc28aQ8CEI3 P2ry2-204ENSMUST00000207916 2372 ntAPPRIS P1 TSL 1 (best) BASIC20.03■□□□□ 0.8
Ccdc28aQ8CEI3 Plin5-202ENSMUST00000113072 1986 ntAPPRIS P1 TSL 1 (best) BASIC20.03■□□□□ 0.8
Ccdc28aQ8CEI3 Chst3-202ENSMUST00000135158 6108 ntAPPRIS P2 TSL 5 BASIC20.03■□□□□ 0.8
Ccdc28aQ8CEI3 Hnrnpab-203ENSMUST00000109103 1437 ntAPPRIS ALT2 TSL 1 (best) BASIC20.02■□□□□ 0.8
Ccdc28aQ8CEI3 Sirt1-202ENSMUST00000105442 3740 ntAPPRIS ALT2 TSL 1 (best) BASIC20.02■□□□□ 0.8
Ccdc28aQ8CEI3 Serbp1-212ENSMUST00000204294 717 ntTSL 5 BASIC20.02■□□□□ 0.8
Ccdc28aQ8CEI3 Rnf44-208ENSMUST00000128257 1689 ntTSL 5 BASIC20.02■□□□□ 0.8
Ccdc28aQ8CEI3 Kcnb1-201ENSMUST00000059826 4015 ntAPPRIS P1 TSL 1 (best) BASIC20.02■□□□□ 0.79
Ccdc28aQ8CEI3 Pxk-201ENSMUST00000036682 2812 ntAPPRIS ALT2 TSL 1 (best) BASIC20.02■□□□□ 0.79
Ccdc28aQ8CEI3 Usp21-201ENSMUST00000065941 2219 ntAPPRIS P2 TSL 1 (best) BASIC20.02■□□□□ 0.79
Ccdc28aQ8CEI3 Gm10209-201ENSMUST00000203397 1607 ntBASIC20.02■□□□□ 0.79
Ccdc28aQ8CEI3 Sox12-201ENSMUST00000063332 4169 ntAPPRIS P1 TSL 2 BASIC20.02■□□□□ 0.79
Ccdc28aQ8CEI3 Zmynd10-201ENSMUST00000010188 1765 ntAPPRIS P1 TSL 1 (best) BASIC20.01■□□□□ 0.79
Ccdc28aQ8CEI3 Oxct2a-201ENSMUST00000102640 1760 ntAPPRIS P1 BASIC20.01■□□□□ 0.79
Ccdc28aQ8CEI3 Itsn2-215ENSMUST00000220311 6080 ntAPPRIS ALT2 TSL 1 (best) BASIC20.01■□□□□ 0.79
Ccdc28aQ8CEI3 Ankle1-201ENSMUST00000119976 2136 ntAPPRIS P3 TSL 1 (best) BASIC20.01■□□□□ 0.79
Ccdc28aQ8CEI3 Kmt5b-201ENSMUST00000005518 1283 ntAPPRIS ALT2 TSL 5 BASIC20.01■□□□□ 0.79
Ccdc28aQ8CEI3 Bcl11b-203ENSMUST00000109891 2888 ntAPPRIS ALT2 TSL 1 (best) BASIC20.01■□□□□ 0.79
Ccdc28aQ8CEI3 Klhl2-201ENSMUST00000034017 3412 ntAPPRIS P2 TSL 1 (best) BASIC20.01■□□□□ 0.79
Ccdc28aQ8CEI3 Fxr2-201ENSMUST00000018909 2951 ntAPPRIS P1 TSL 1 (best) BASIC20.01■□□□□ 0.79
Ccdc28aQ8CEI3 Nfatc2-201ENSMUST00000029057 2310 ntTSL 1 (best) BASIC20.01■□□□□ 0.79
Ccdc28aQ8CEI3 Coq9-201ENSMUST00000034234 1789 ntAPPRIS P1 TSL 1 (best) BASIC20■□□□□ 0.79
Ccdc28aQ8CEI3 Shisa4-201ENSMUST00000041240 1763 ntAPPRIS P1 TSL 1 (best) BASIC20■□□□□ 0.79
Ccdc28aQ8CEI3 Marcks-201ENSMUST00000092584 4048 ntAPPRIS P1 TSL 1 (best) BASIC20■□□□□ 0.79
Ccdc28aQ8CEI3 Paics-201ENSMUST00000031160 2482 ntAPPRIS P1 TSL 1 (best) BASIC20■□□□□ 0.79
Ccdc28aQ8CEI3 Cdc14b-201ENSMUST00000039318 5859 ntAPPRIS P3 TSL 1 (best) BASIC20■□□□□ 0.79
Ccdc28aQ8CEI3 Fzr1-205ENSMUST00000140901 3057 ntAPPRIS P1 TSL 1 (best) BASIC20■□□□□ 0.79
Ccdc28aQ8CEI3 Zc3hav1l-201ENSMUST00000058524 6536 ntAPPRIS P1 TSL 1 (best) BASIC20■□□□□ 0.79
Ccdc28aQ8CEI3 Pgam5-202ENSMUST00000112505 2098 ntAPPRIS ALT1 TSL 1 (best) BASIC20■□□□□ 0.79
Ccdc28aQ8CEI3 Zdhhc13-201ENSMUST00000118927 2410 ntAPPRIS P1 TSL 1 (best) BASIC20■□□□□ 0.79
Ccdc28aQ8CEI3 Grb14-201ENSMUST00000028252 1986 ntAPPRIS P1 TSL 1 (best) BASIC20■□□□□ 0.79
Ccdc28aQ8CEI3 Golga7b-202ENSMUST00000122375 2836 ntAPPRIS P1 TSL 1 (best) BASIC20■□□□□ 0.79
Ccdc28aQ8CEI3 Bmpr1b-203ENSMUST00000106230 2147 ntAPPRIS P1 TSL 1 (best) BASIC20■□□□□ 0.79
Ccdc28aQ8CEI3 Smad7-201ENSMUST00000026999 4278 ntAPPRIS P1 TSL 1 (best) BASIC20■□□□□ 0.79
Ccdc28aQ8CEI3 Unc119-201ENSMUST00000002127 1329 ntAPPRIS P1 TSL 1 (best) BASIC20■□□□□ 0.79
Ccdc28aQ8CEI3 Gal3st3-201ENSMUST00000061169 2421 ntAPPRIS P1 TSL 1 (best) BASIC20■□□□□ 0.79
Ccdc28aQ8CEI3 Rbm43-201ENSMUST00000102767 2057 ntAPPRIS P1 TSL 1 (best) BASIC19.99■□□□□ 0.79
Ccdc28aQ8CEI3 Zfp771-201ENSMUST00000052509 1484 ntAPPRIS P1 TSL 1 (best) BASIC19.99■□□□□ 0.79
Ccdc28aQ8CEI3 Slc39a10-201ENSMUST00000027131 5498 ntAPPRIS P1 TSL 1 (best) BASIC19.99■□□□□ 0.79
Ccdc28aQ8CEI3 Satb1-211ENSMUST00000152830 5993 ntAPPRIS P2 TSL 2 BASIC19.99■□□□□ 0.79
Ccdc28aQ8CEI3 Ndfip2-206ENSMUST00000181969 2532 ntAPPRIS P1 TSL 1 (best) BASIC19.99■□□□□ 0.79
Ccdc28aQ8CEI3 Nudt10-201ENSMUST00000103006 1775 ntAPPRIS P1 TSL 1 (best) BASIC19.99■□□□□ 0.79
Ccdc28aQ8CEI3 Slc30a2-203ENSMUST00000105873 1224 ntTSL 5 BASIC19.99■□□□□ 0.79
Ccdc28aQ8CEI3 Pcgf3-202ENSMUST00000112597 2169 ntTSL 1 (best) BASIC19.99■□□□□ 0.79
Ccdc28aQ8CEI3 Pqlc1-201ENSMUST00000070135 1911 ntAPPRIS ALT2 TSL 1 (best) BASIC19.99■□□□□ 0.79
Ccdc28aQ8CEI3 Kat14-201ENSMUST00000028911 3801 ntAPPRIS P1 TSL 1 (best) BASIC19.99■□□□□ 0.79
Ccdc28aQ8CEI3 Nadk2-201ENSMUST00000067760 3731 ntAPPRIS P5 TSL 5 BASIC19.99■□□□□ 0.79
Ccdc28aQ8CEI3 Fcmr-201ENSMUST00000038829 1600 ntAPPRIS P1 TSL 1 (best) BASIC19.98■□□□□ 0.79
Ccdc28aQ8CEI3 Bcl9l-206ENSMUST00000220303 5760 ntAPPRIS ALT2 TSL 1 (best) BASIC19.98■□□□□ 0.79
Retrieved 100 of 76,532 protein–RNA pairs in 16.2 ms