Protein–RNA interactions for Protein: Q8BX13

Ube3d, E3 ubiquitin-protein ligase E3D, mousemouse

Predictions only

Length 368 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Ube3dQ8BX13 Nabp2-201ENSMUST00000026439 1130 ntAPPRIS P1 TSL 1 (best) BASIC16.85■□□□□ 0.29
Ube3dQ8BX13 Ferd3l-201ENSMUST00000061035 886 ntAPPRIS P1 BASIC16.85■□□□□ 0.29
Ube3dQ8BX13 Tmem171-201ENSMUST00000064347 1161 ntAPPRIS P1 TSL 1 (best) BASIC16.85■□□□□ 0.29
Ube3dQ8BX13 Ypel1-202ENSMUST00000090199 631 ntTSL 1 (best) BASIC16.85■□□□□ 0.29
Ube3dQ8BX13 Acvrl1-206ENSMUST00000121718 1906 ntAPPRIS P1 TSL 1 (best) BASIC16.85■□□□□ 0.29
Ube3dQ8BX13 Eml4-203ENSMUST00000112363 5238 ntAPPRIS ALT2 TSL 1 (best) BASIC16.85■□□□□ 0.29
Ube3dQ8BX13 Nsmf-205ENSMUST00000114386 2685 ntTSL 5 BASIC16.85■□□□□ 0.29
Ube3dQ8BX13 Brpf3-201ENSMUST00000004985 5766 ntAPPRIS P1 TSL 1 (best) BASIC16.85■□□□□ 0.29
Ube3dQ8BX13 Fgf3-201ENSMUST00000105898 2299 ntAPPRIS P1 TSL 1 (best) BASIC16.85■□□□□ 0.29
Ube3dQ8BX13 Dtx4-201ENSMUST00000045521 5765 ntAPPRIS P1 TSL 1 (best) BASIC16.85■□□□□ 0.29
Ube3dQ8BX13 Nfe2-201ENSMUST00000075192 1697 ntAPPRIS P1 TSL 1 (best) BASIC16.85■□□□□ 0.29
Ube3dQ8BX13 Purb-201ENSMUST00000179343 8319 ntAPPRIS P1 BASIC16.84■□□□□ 0.29
Ube3dQ8BX13 Gm4969-202ENSMUST00000141380 1892 ntAPPRIS P1 TSL 5 BASIC16.84■□□□□ 0.29
Ube3dQ8BX13 Gfra1-208ENSMUST00000152507 1937 ntAPPRIS P1 TSL 5 BASIC16.84■□□□□ 0.29
Ube3dQ8BX13 Eno1-202ENSMUST00000080926 2027 ntAPPRIS P1 TSL 1 (best) BASIC16.84■□□□□ 0.29
Ube3dQ8BX13 Zfp467-202ENSMUST00000114556 2287 ntTSL 1 (best) BASIC16.84■□□□□ 0.29
Ube3dQ8BX13 Tmem179-201ENSMUST00000066791 2380 ntAPPRIS P1 TSL 1 (best) BASIC16.84■□□□□ 0.29
Ube3dQ8BX13 Fam58b-201ENSMUST00000059468 1224 ntAPPRIS P1 BASIC16.84■□□□□ 0.29
Ube3dQ8BX13 Ugdh-201ENSMUST00000031103 2550 ntAPPRIS P1 TSL 1 (best) BASIC16.84■□□□□ 0.29
Ube3dQ8BX13 Ankrd9-203ENSMUST00000135131 1563 ntAPPRIS P2 TSL 1 (best) BASIC16.84■□□□□ 0.29
Ube3dQ8BX13 Kcnip1-201ENSMUST00000065970 1749 ntAPPRIS P1 TSL 1 (best) BASIC16.84■□□□□ 0.29
Ube3dQ8BX13 Dnajb11-201ENSMUST00000004574 1927 ntAPPRIS P1 TSL 1 (best) BASIC16.84■□□□□ 0.29
Ube3dQ8BX13 Kcnn4-201ENSMUST00000171904 1990 ntAPPRIS P1 TSL 1 (best) BASIC16.84■□□□□ 0.29
Ube3dQ8BX13 Prcd-201ENSMUST00000106381 724 ntTSL 3 BASIC16.83■□□□□ 0.28
Ube3dQ8BX13 1700030C10Rik-201ENSMUST00000110971 1471 ntBASIC16.83■□□□□ 0.28
Ube3dQ8BX13 Snx21-206ENSMUST00000174070 1446 ntTSL 5 BASIC16.83■□□□□ 0.28
Ube3dQ8BX13 1700012B09Rik-204ENSMUST00000191047 654 ntAPPRIS ALT2 TSL 3 BASIC16.83■□□□□ 0.28
Ube3dQ8BX13 Gm43231-201ENSMUST00000202960 2258 ntBASIC16.83■□□□□ 0.28
Ube3dQ8BX13 Lmo1-202ENSMUST00000207178 912 ntAPPRIS ALT1 TSL 2 BASIC16.83■□□□□ 0.28
Ube3dQ8BX13 AC122828.1-201ENSMUST00000220785 489 ntTSL 3 BASIC16.83■□□□□ 0.28
Ube3dQ8BX13 Wbp1-201ENSMUST00000032111 1419 ntTSL 1 (best) BASIC16.83■□□□□ 0.28
Ube3dQ8BX13 Baz1a-201ENSMUST00000038926 6188 ntAPPRIS ALT2 TSL 5 BASIC16.83■□□□□ 0.28
Ube3dQ8BX13 Chtop-202ENSMUST00000049937 2012 ntAPPRIS P1 TSL 1 (best) BASIC16.83■□□□□ 0.28
Ube3dQ8BX13 Dhps-201ENSMUST00000078665 1333 ntAPPRIS P1 TSL 1 (best) BASIC16.83■□□□□ 0.28
Ube3dQ8BX13 Gatad2a-202ENSMUST00000116463 3363 ntAPPRIS ALT2 TSL 1 (best) BASIC16.83■□□□□ 0.28
Ube3dQ8BX13 Pafah1b1-201ENSMUST00000021091 5803 ntAPPRIS P1 TSL 1 (best) BASIC16.83■□□□□ 0.28
Ube3dQ8BX13 Epn1-202ENSMUST00000098845 2565 ntAPPRIS P2 TSL 1 (best) BASIC16.83■□□□□ 0.28
Ube3dQ8BX13 Fgfr1-215ENSMUST00000179592 5041 ntTSL 5 BASIC16.82■□□□□ 0.28
Ube3dQ8BX13 Snx4-201ENSMUST00000023502 2442 ntAPPRIS P1 TSL 1 (best) BASIC16.82■□□□□ 0.28
Ube3dQ8BX13 Usp21-201ENSMUST00000065941 2219 ntAPPRIS P2 TSL 1 (best) BASIC16.82■□□□□ 0.28
Ube3dQ8BX13 Msx1-201ENSMUST00000063116 1935 ntAPPRIS P1 TSL 1 (best) BASIC16.82■□□□□ 0.28
Ube3dQ8BX13 Mms22l-205ENSMUST00000138567 1350 ntTSL 2 BASIC16.82■□□□□ 0.28
Ube3dQ8BX13 Moap1-201ENSMUST00000173760 1312 ntAPPRIS P1 TSL 2 BASIC16.82■□□□□ 0.28
Ube3dQ8BX13 Mcub-201ENSMUST00000029624 1318 ntAPPRIS P1 TSL 1 (best) BASIC16.82■□□□□ 0.28
Ube3dQ8BX13 AC099934.2-201ENSMUST00000196389 70 ntBASIC16.82■□□□□ 0.28
Ube3dQ8BX13 AC156953.1-201ENSMUST00000196953 70 ntBASIC16.82■□□□□ 0.28
Ube3dQ8BX13 AC157822.2-201ENSMUST00000200291 70 ntBASIC16.82■□□□□ 0.28
Ube3dQ8BX13 AC137127.1-201ENSMUST00000213466 1078 ntBASIC16.82■□□□□ 0.28
Ube3dQ8BX13 Fiz1-204ENSMUST00000207030 2178 ntAPPRIS P1 TSL 1 (best) BASIC16.82■□□□□ 0.28
Ube3dQ8BX13 Lhx8-201ENSMUST00000177846 2076 ntTSL 1 (best) BASIC16.82■□□□□ 0.28
Ube3dQ8BX13 Srsf1-201ENSMUST00000079866 2948 ntTSL 1 (best) BASIC16.82■□□□□ 0.28
Ube3dQ8BX13 Bcl11b-203ENSMUST00000109891 2888 ntAPPRIS ALT2 TSL 1 (best) BASIC16.82■□□□□ 0.28
Ube3dQ8BX13 Zfp692-202ENSMUST00000153510 1887 ntAPPRIS P1 TSL 5 BASIC16.82■□□□□ 0.28
Ube3dQ8BX13 Elac2-201ENSMUST00000071891 2771 ntAPPRIS P2 TSL 1 (best) BASIC16.82■□□□□ 0.28
Ube3dQ8BX13 Stac3-201ENSMUST00000035839 1790 ntAPPRIS P1 TSL 1 (best) BASIC16.82■□□□□ 0.28
Ube3dQ8BX13 Tpst2-202ENSMUST00000071455 1741 ntAPPRIS P1 TSL 1 (best) BASIC16.82■□□□□ 0.28
Ube3dQ8BX13 Pnldc1-201ENSMUST00000163394 1689 ntAPPRIS P1 TSL 1 (best) BASIC16.81■□□□□ 0.28
Ube3dQ8BX13 Krtap5-3-202ENSMUST00000187512 1652 ntAPPRIS P2 BASIC16.81■□□□□ 0.28
Ube3dQ8BX13 Irx5-201ENSMUST00000034184 2450 ntAPPRIS P1 TSL 1 (best) BASIC16.81■□□□□ 0.28
Ube3dQ8BX13 B3gnt9-201ENSMUST00000093217 2325 ntAPPRIS P1 TSL 2 BASIC16.81■□□□□ 0.28
Ube3dQ8BX13 Stx2-201ENSMUST00000031378 2939 ntAPPRIS P3 TSL 1 (best) BASIC16.81■□□□□ 0.28
Ube3dQ8BX13 AC161052.2-201ENSMUST00000220969 1375 ntTSL 5 BASIC16.81■□□□□ 0.28
Ube3dQ8BX13 Mex3b-201ENSMUST00000082237 3355 ntAPPRIS P1 TSL 2 BASIC16.81■□□□□ 0.28
Ube3dQ8BX13 Chmp7-201ENSMUST00000036381 2649 ntAPPRIS P1 TSL 1 (best) BASIC16.81■□□□□ 0.28
Ube3dQ8BX13 Kl-201ENSMUST00000078856 5118 ntAPPRIS P1 TSL 1 (best) BASIC16.81■□□□□ 0.28
Ube3dQ8BX13 Gm13067-201ENSMUST00000134236 404 ntTSL 5 BASIC16.81■□□□□ 0.28
Ube3dQ8BX13 Gm20421-201ENSMUST00000153344 672 ntTSL 3 BASIC16.81■□□□□ 0.28
Ube3dQ8BX13 Plac9b-203ENSMUST00000184142 1040 ntAPPRIS P1 TSL 1 (best) BASIC16.81■□□□□ 0.28
Ube3dQ8BX13 C230037L18Rik-201ENSMUST00000136218 1886 ntTSL 1 (best) BASIC16.81■□□□□ 0.28
Ube3dQ8BX13 Meis3-201ENSMUST00000002495 1731 ntAPPRIS P1 TSL 1 (best) BASIC16.81■□□□□ 0.28
Ube3dQ8BX13 Aen-202ENSMUST00000107423 2230 ntAPPRIS P3 TSL 5 BASIC16.81■□□□□ 0.28
Ube3dQ8BX13 Rrad-201ENSMUST00000034351 1577 ntAPPRIS P1 TSL 1 (best) BASIC16.81■□□□□ 0.28
Ube3dQ8BX13 Fzd2-201ENSMUST00000057893 3663 ntAPPRIS P1 BASIC16.81■□□□□ 0.28
Ube3dQ8BX13 Fam118a-201ENSMUST00000023069 2543 ntAPPRIS P1 TSL 1 (best) BASIC16.8■□□□□ 0.28
Ube3dQ8BX13 Rbm15b-201ENSMUST00000055843 6511 ntAPPRIS P1 BASIC16.8■□□□□ 0.28
Ube3dQ8BX13 Grb14-201ENSMUST00000028252 1986 ntAPPRIS P1 TSL 1 (best) BASIC16.8■□□□□ 0.28
Ube3dQ8BX13 Cdkn1c-201ENSMUST00000037287 1901 ntAPPRIS P3 TSL 1 (best) BASIC16.8■□□□□ 0.28
Ube3dQ8BX13 Gspt1-201ENSMUST00000080030 2898 ntAPPRIS P3 TSL 1 (best) BASIC16.8■□□□□ 0.28
Ube3dQ8BX13 P2ry2-204ENSMUST00000207916 2372 ntAPPRIS P1 TSL 1 (best) BASIC16.8■□□□□ 0.28
Ube3dQ8BX13 Gm10129-202ENSMUST00000193100 1316 ntBASIC16.8■□□□□ 0.28
Ube3dQ8BX13 Col9a3-203ENSMUST00000132527 3046 ntAPPRIS P1 TSL 5 BASIC16.8■□□□□ 0.28
Ube3dQ8BX13 Rfc5-202ENSMUST00000111953 772 ntTSL 1 (best) BASIC16.8■□□□□ 0.28
Ube3dQ8BX13 Wnt16-203ENSMUST00000148639 1168 ntTSL 1 (best) BASIC16.8■□□□□ 0.28
Ube3dQ8BX13 Hes3-202ENSMUST00000218045 962 ntAPPRIS ALT2 TSL 5 BASIC16.8■□□□□ 0.28
Ube3dQ8BX13 Zfp428-201ENSMUST00000071361 1182 ntAPPRIS P3 TSL 1 (best) BASIC16.8■□□□□ 0.28
Ube3dQ8BX13 Enah-203ENSMUST00000111025 3385 ntAPPRIS ALT2 TSL 5 BASIC16.8■□□□□ 0.28
Ube3dQ8BX13 Gxylt1-201ENSMUST00000049484 6611 ntAPPRIS P3 TSL 1 (best) BASIC16.8■□□□□ 0.28
Ube3dQ8BX13 Trmt11-201ENSMUST00000019927 2359 ntAPPRIS P1 TSL 1 (best) BASIC16.8■□□□□ 0.28
Ube3dQ8BX13 Mprip-201ENSMUST00000066330 7765 ntAPPRIS ALT2 TSL 5 BASIC16.8■□□□□ 0.28
Ube3dQ8BX13 Slc3a2-201ENSMUST00000010239 1819 ntAPPRIS P3 TSL 1 (best) BASIC16.8■□□□□ 0.28
Ube3dQ8BX13 Ndfip2-206ENSMUST00000181969 2532 ntAPPRIS P1 TSL 1 (best) BASIC16.79■□□□□ 0.28
Ube3dQ8BX13 Hnrnpab-203ENSMUST00000109103 1437 ntAPPRIS ALT2 TSL 1 (best) BASIC16.79■□□□□ 0.28
Ube3dQ8BX13 Rin3-202ENSMUST00000101114 2394 ntTSL 1 (best) BASIC16.79■□□□□ 0.28
Ube3dQ8BX13 Gm38399-201ENSMUST00000112103 1645 ntTSL 2 BASIC16.79■□□□□ 0.28
Ube3dQ8BX13 Gm16076-201ENSMUST00000140116 480 ntTSL 3 BASIC16.79■□□□□ 0.28
Ube3dQ8BX13 Pianp-204ENSMUST00000160704 1116 ntAPPRIS P2 TSL 1 (best) BASIC16.79■□□□□ 0.28
Ube3dQ8BX13 Tmbim4-201ENSMUST00000020446 904 ntAPPRIS P1 TSL 1 (best) BASIC16.79■□□□□ 0.28
Ube3dQ8BX13 Spaca1-201ENSMUST00000029927 1197 ntAPPRIS P3 TSL 1 (best) BASIC16.79■□□□□ 0.28
Ube3dQ8BX13 Spaca1-202ENSMUST00000084734 1149 ntAPPRIS ALT2 TSL 1 (best) BASIC16.79■□□□□ 0.28
Ube3dQ8BX13 Slc25a16-201ENSMUST00000044977 3145 ntAPPRIS P1 TSL 1 (best) BASIC16.79■□□□□ 0.28
Retrieved 100 of 76,532 protein–RNA pairs in 17.9 ms