Protein–RNA interactions for Protein: Q8BJF9

Chmp2b, Charged multivesicular body protein 2b, mousemouse

Predictions only

Length 213 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Chmp2bQ8BJF9 Irx3-201ENSMUST00000093312 2610 ntAPPRIS P4 TSL 1 (best) BASIC19.42■□□□□ 0.7
Chmp2bQ8BJF9 Itsn2-201ENSMUST00000062580 5987 ntAPPRIS P2 TSL 5 BASIC19.42■□□□□ 0.7
Chmp2bQ8BJF9 Zc3h14-202ENSMUST00000057000 3046 ntTSL 1 (best) BASIC19.42■□□□□ 0.7
Chmp2bQ8BJF9 Kcne1l-201ENSMUST00000134825 1543 ntAPPRIS P1 BASIC19.42■□□□□ 0.7
Chmp2bQ8BJF9 C230037L18Rik-201ENSMUST00000136218 1886 ntTSL 1 (best) BASIC19.42■□□□□ 0.7
Chmp2bQ8BJF9 Tada2b-201ENSMUST00000031097 3791 ntAPPRIS P1 TSL 2 BASIC19.42■□□□□ 0.7
Chmp2bQ8BJF9 Tnfsf11-201ENSMUST00000022592 2236 ntAPPRIS P1 TSL 1 (best) BASIC19.42■□□□□ 0.7
Chmp2bQ8BJF9 Gm12922-201ENSMUST00000120626 809 ntBASIC19.42■□□□□ 0.7
Chmp2bQ8BJF9 2310061I04Rik-203ENSMUST00000148482 1193 ntTSL 1 (best) BASIC19.42■□□□□ 0.7
Chmp2bQ8BJF9 Btnl9-202ENSMUST00000066531 1945 ntAPPRIS ALT2 TSL 1 (best) BASIC19.42■□□□□ 0.7
Chmp2bQ8BJF9 Dyrk1b-203ENSMUST00000172761 2018 ntAPPRIS ALT1 TSL 1 (best) BASIC19.42■□□□□ 0.7
Chmp2bQ8BJF9 Trmt11-201ENSMUST00000019927 2359 ntAPPRIS P1 TSL 1 (best) BASIC19.42■□□□□ 0.7
Chmp2bQ8BJF9 BC021767-201ENSMUST00000126387 1716 ntBASIC19.42■□□□□ 0.7
Chmp2bQ8BJF9 Gm11762-201ENSMUST00000135630 1705 ntTSL 1 (best) BASIC19.42■□□□□ 0.7
Chmp2bQ8BJF9 Pgf-204ENSMUST00000223220 2080 ntAPPRIS ALT2 TSL 1 (best) BASIC19.42■□□□□ 0.7
Chmp2bQ8BJF9 Zdhhc13-201ENSMUST00000118927 2410 ntAPPRIS P1 TSL 1 (best) BASIC19.42■□□□□ 0.7
Chmp2bQ8BJF9 Stac3-201ENSMUST00000035839 1790 ntAPPRIS P1 TSL 1 (best) BASIC19.42■□□□□ 0.7
Chmp2bQ8BJF9 Gmpr-201ENSMUST00000000260 1580 ntAPPRIS P1 TSL 1 (best) BASIC19.41■□□□□ 0.7
Chmp2bQ8BJF9 Gm10571-201ENSMUST00000097869 1638 ntBASIC19.41■□□□□ 0.7
Chmp2bQ8BJF9 Snx16-203ENSMUST00000195822 1084 ntTSL 1 (best) BASIC19.41■□□□□ 0.7
Chmp2bQ8BJF9 Chmp7-201ENSMUST00000036381 2649 ntAPPRIS P1 TSL 1 (best) BASIC19.41■□□□□ 0.7
Chmp2bQ8BJF9 Mplkip-201ENSMUST00000049744 2672 ntAPPRIS P1 TSL 1 (best) BASIC19.41■□□□□ 0.7
Chmp2bQ8BJF9 Ezh2-204ENSMUST00000114618 2775 ntTSL 1 (best) BASIC19.41■□□□□ 0.7
Chmp2bQ8BJF9 Nus1-201ENSMUST00000023830 4605 ntAPPRIS P1 TSL 1 (best) BASIC19.41■□□□□ 0.7
Chmp2bQ8BJF9 Mfsd14a-201ENSMUST00000029570 2782 ntAPPRIS P1 TSL 1 (best) BASIC19.41■□□□□ 0.7
Chmp2bQ8BJF9 Hnrnpab-203ENSMUST00000109103 1437 ntAPPRIS ALT2 TSL 1 (best) BASIC19.41■□□□□ 0.7
Chmp2bQ8BJF9 Cnih3-202ENSMUST00000161880 1995 ntTSL 1 (best) BASIC19.41■□□□□ 0.7
Chmp2bQ8BJF9 Phldb3-204ENSMUST00000206422 2564 ntAPPRIS P1 TSL 5 BASIC19.4■□□□□ 0.7
Chmp2bQ8BJF9 Sox12-201ENSMUST00000063332 4169 ntAPPRIS P1 TSL 2 BASIC19.4■□□□□ 0.7
Chmp2bQ8BJF9 Ttyh3-201ENSMUST00000042661 4658 ntAPPRIS P1 TSL 1 (best) BASIC19.4■□□□□ 0.7
Chmp2bQ8BJF9 Dtymk-202ENSMUST00000112890 1055 ntTSL 1 (best) BASIC19.4■□□□□ 0.7
Chmp2bQ8BJF9 Bex1-202ENSMUST00000113118 754 ntAPPRIS P1 TSL 2 BASIC19.4■□□□□ 0.7
Chmp2bQ8BJF9 Ubxn1-202ENSMUST00000166407 1032 ntAPPRIS P1 TSL 1 (best) BASIC19.4■□□□□ 0.7
Chmp2bQ8BJF9 Gm3448-203ENSMUST00000179539 787 ntAPPRIS ALT2 TSL 1 (best) BASIC19.4■□□□□ 0.7
Chmp2bQ8BJF9 Slc25a41-201ENSMUST00000058661 1225 ntAPPRIS P3 TSL 1 (best) BASIC19.4■□□□□ 0.7
Chmp2bQ8BJF9 Gm3448-201ENSMUST00000097399 787 ntAPPRIS P5 TSL 1 (best) BASIC19.4■□□□□ 0.7
Chmp2bQ8BJF9 Tmem79-203ENSMUST00000107553 2053 ntAPPRIS P1 TSL 1 (best) BASIC19.4■□□□□ 0.7
Chmp2bQ8BJF9 Golga7b-202ENSMUST00000122375 2836 ntAPPRIS P1 TSL 1 (best) BASIC19.4■□□□□ 0.7
Chmp2bQ8BJF9 Pxk-201ENSMUST00000036682 2812 ntAPPRIS ALT2 TSL 1 (best) BASIC19.4■□□□□ 0.7
Chmp2bQ8BJF9 Pdp1-206ENSMUST00000108302 2525 ntTSL 3 BASIC19.4■□□□□ 0.7
Chmp2bQ8BJF9 Hirip3-201ENSMUST00000037248 2766 ntAPPRIS P1 TSL 1 (best) BASIC19.39■□□□□ 0.7
Chmp2bQ8BJF9 Nbn-201ENSMUST00000029879 2533 ntAPPRIS P1 TSL 1 (best) BASIC19.39■□□□□ 0.69
Chmp2bQ8BJF9 Pnkd-204ENSMUST00000113805 740 ntTSL 1 (best) BASIC19.39■□□□□ 0.69
Chmp2bQ8BJF9 D630036H23Rik-201ENSMUST00000171007 940 ntAPPRIS P1 BASIC19.39■□□□□ 0.69
Chmp2bQ8BJF9 Gm20522-201ENSMUST00000173576 784 ntTSL 1 (best) BASIC19.39■□□□□ 0.69
Chmp2bQ8BJF9 Copz2-201ENSMUST00000018816 930 ntAPPRIS P1 TSL 1 (best) BASIC19.39■□□□□ 0.69
Chmp2bQ8BJF9 Zfp580-202ENSMUST00000208570 693 ntAPPRIS ALT2 TSL 1 (best) BASIC19.39■□□□□ 0.69
Chmp2bQ8BJF9 Gm10645-201ENSMUST00000098605 1090 ntAPPRIS P1 BASIC19.39■□□□□ 0.69
Chmp2bQ8BJF9 Mgll-202ENSMUST00000113581 1308 ntTSL 5 BASIC19.39■□□□□ 0.69
Chmp2bQ8BJF9 Rap1b-201ENSMUST00000064667 2724 ntAPPRIS P1 TSL 1 (best) BASIC19.39■□□□□ 0.69
Chmp2bQ8BJF9 4930412F12Rik-201ENSMUST00000211700 1471 ntBASIC19.39■□□□□ 0.69
Chmp2bQ8BJF9 Ripply3-201ENSMUST00000023660 1531 ntAPPRIS P1 TSL 1 (best) BASIC19.39■□□□□ 0.69
Chmp2bQ8BJF9 Runx2-210ENSMUST00000162373 1565 ntAPPRIS ALT2 TSL 5 BASIC19.39■□□□□ 0.69
Chmp2bQ8BJF9 Coq10b-201ENSMUST00000027125 1733 ntAPPRIS ALT2 TSL 1 (best) BASIC19.39■□□□□ 0.69
Chmp2bQ8BJF9 Arpc5-202ENSMUST00000097536 1737 ntTSL 1 (best) BASIC19.39■□□□□ 0.69
Chmp2bQ8BJF9 Hpca-204ENSMUST00000116444 1847 ntAPPRIS P1 TSL 5 BASIC19.39■□□□□ 0.69
Chmp2bQ8BJF9 Marcks-201ENSMUST00000092584 4048 ntAPPRIS P1 TSL 1 (best) BASIC19.38■□□□□ 0.69
Chmp2bQ8BJF9 Vav2-201ENSMUST00000056176 5221 ntAPPRIS P1 TSL 1 (best) BASIC19.38■□□□□ 0.69
Chmp2bQ8BJF9 Smox-205ENSMUST00000110182 985 ntTSL 1 (best) BASIC19.38■□□□□ 0.69
Chmp2bQ8BJF9 Htra2-202ENSMUST00000113962 1305 ntTSL 5 BASIC19.38■□□□□ 0.69
Chmp2bQ8BJF9 Rbm18-201ENSMUST00000028251 2617 ntAPPRIS P1 TSL 1 (best) BASIC19.38■□□□□ 0.69
Chmp2bQ8BJF9 Pxmp2-201ENSMUST00000031472 1041 ntAPPRIS P1 TSL 1 (best) BASIC19.38■□□□□ 0.69
Chmp2bQ8BJF9 Hspb1-201ENSMUST00000005077 903 ntAPPRIS P1 TSL 1 (best) BASIC19.38■□□□□ 0.69
Chmp2bQ8BJF9 Ccdc84-201ENSMUST00000053286 1725 ntAPPRIS P1 TSL 1 (best) BASIC19.38■□□□□ 0.69
Chmp2bQ8BJF9 Kat14-201ENSMUST00000028911 3801 ntAPPRIS P1 TSL 1 (best) BASIC19.38■□□□□ 0.69
Chmp2bQ8BJF9 Hdhd5-201ENSMUST00000075303 1928 ntAPPRIS P1 TSL 1 (best) BASIC19.37■□□□□ 0.69
Chmp2bQ8BJF9 Hopxos-201ENSMUST00000148568 1661 ntTSL 1 (best) BASIC19.37■□□□□ 0.69
Chmp2bQ8BJF9 Dap3-201ENSMUST00000090938 4760 ntAPPRIS P2 TSL 1 (best) BASIC19.37■□□□□ 0.69
Chmp2bQ8BJF9 Vrk1-202ENSMUST00000072040 1509 ntAPPRIS ALT2 TSL 1 (best) BASIC19.37■□□□□ 0.69
Chmp2bQ8BJF9 Dennd2a-201ENSMUST00000036877 4468 ntAPPRIS P1 TSL 1 (best) BASIC19.37■□□□□ 0.69
Chmp2bQ8BJF9 Vps9d1-203ENSMUST00000122363 2952 ntAPPRIS P3 TSL 1 (best) BASIC19.37■□□□□ 0.69
Chmp2bQ8BJF9 Panx1-202ENSMUST00000164273 5732 ntAPPRIS P1 TSL 1 (best) BASIC19.37■□□□□ 0.69
Chmp2bQ8BJF9 Kcnk1-202ENSMUST00000212831 1309 ntTSL 5 BASIC19.37■□□□□ 0.69
Chmp2bQ8BJF9 AB124611-202ENSMUST00000086361 1310 ntAPPRIS ALT2 TSL 1 (best) BASIC19.37■□□□□ 0.69
Chmp2bQ8BJF9 Gal3st3-201ENSMUST00000061169 2421 ntAPPRIS P1 TSL 1 (best) BASIC19.37■□□□□ 0.69
Chmp2bQ8BJF9 E030030I06Rik-202ENSMUST00000179054 2081 ntAPPRIS P4 TSL 1 (best) BASIC19.37■□□□□ 0.69
Chmp2bQ8BJF9 Mprip-203ENSMUST00000108751 4021 ntAPPRIS ALT2 TSL 1 (best) BASIC19.37■□□□□ 0.69
Chmp2bQ8BJF9 Fbxw2-206ENSMUST00000113080 1923 ntAPPRIS P1 TSL 1 (best) BASIC19.37■□□□□ 0.69
Chmp2bQ8BJF9 Gspt1-201ENSMUST00000080030 2898 ntAPPRIS P3 TSL 1 (best) BASIC19.37■□□□□ 0.69
Chmp2bQ8BJF9 Sphk1-203ENSMUST00000100201 1800 ntAPPRIS ALT2 TSL 1 (best) BASIC19.37■□□□□ 0.69
Chmp2bQ8BJF9 Rabgap1l-201ENSMUST00000028049 2748 ntAPPRIS P1 TSL 1 (best) BASIC19.37■□□□□ 0.69
Chmp2bQ8BJF9 Ndfip2-206ENSMUST00000181969 2532 ntAPPRIS P1 TSL 1 (best) BASIC19.36■□□□□ 0.69
Chmp2bQ8BJF9 Ttc9-202ENSMUST00000218362 4754 ntAPPRIS P1 TSL 1 (best) BASIC19.36■□□□□ 0.69
Chmp2bQ8BJF9 Smap1-201ENSMUST00000027339 2289 ntAPPRIS P1 TSL 1 (best) BASIC19.36■□□□□ 0.69
Chmp2bQ8BJF9 Tmem62-201ENSMUST00000067582 2921 ntAPPRIS P1 TSL 1 (best) BASIC19.36■□□□□ 0.69
Chmp2bQ8BJF9 Nlgn2-202ENSMUST00000108634 5568 ntAPPRIS P1 TSL 1 (best) BASIC19.36■□□□□ 0.69
Chmp2bQ8BJF9 D630002J18Rik-201ENSMUST00000181854 1115 ntBASIC19.36■□□□□ 0.69
Chmp2bQ8BJF9 Galnt14-202ENSMUST00000112591 1843 ntTSL 1 (best) BASIC19.36■□□□□ 0.69
Chmp2bQ8BJF9 Matk-205ENSMUST00000121205 1841 ntAPPRIS ALT2 TSL 1 (best) BASIC19.36■□□□□ 0.69
Chmp2bQ8BJF9 Tmbim1-201ENSMUST00000016309 2378 ntAPPRIS P1 TSL 1 (best) BASIC19.36■□□□□ 0.69
Chmp2bQ8BJF9 Gm6627-201ENSMUST00000218299 2386 ntBASIC19.36■□□□□ 0.69
Chmp2bQ8BJF9 Sstr1-202ENSMUST00000110671 1752 ntAPPRIS P1 TSL 2 BASIC19.36■□□□□ 0.69
Chmp2bQ8BJF9 Eif3b-201ENSMUST00000100507 2945 ntAPPRIS P1 TSL 1 (best) BASIC19.36■□□□□ 0.69
Chmp2bQ8BJF9 Bcl11b-203ENSMUST00000109891 2888 ntAPPRIS ALT2 TSL 1 (best) BASIC19.36■□□□□ 0.69
Chmp2bQ8BJF9 6030419C18Rik-201ENSMUST00000085658 2139 ntAPPRIS P1 TSL 1 (best) BASIC19.36■□□□□ 0.69
Chmp2bQ8BJF9 Zfp579-206ENSMUST00000162731 2489 ntAPPRIS P1 BASIC19.35■□□□□ 0.69
Chmp2bQ8BJF9 Ssx2ip-204ENSMUST00000106153 3446 ntAPPRIS P3 TSL 1 (best) BASIC19.35■□□□□ 0.69
Chmp2bQ8BJF9 Neil2-201ENSMUST00000038229 1932 ntAPPRIS P1 TSL 1 (best) BASIC19.35■□□□□ 0.69
Chmp2bQ8BJF9 Tmem102-201ENSMUST00000051025 1933 ntAPPRIS P1 TSL 1 (best) BASIC19.35■□□□□ 0.69
Chmp2bQ8BJF9 Twist2-201ENSMUST00000007949 1329 ntAPPRIS P1 TSL 1 (best) BASIC19.35■□□□□ 0.69
Retrieved 100 of 76,532 protein–RNA pairs in 26.9 ms