Protein–RNA interactions for Protein: Q8BI79

Ccdc40, Coiled-coil domain-containing protein 40, mousemouse

Predictions only

Length 1,192 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Ccdc40Q8BI79 Krtap5-2-201ENSMUST00000067978 937 ntAPPRIS ALT2 TSL 5 BASIC19.75■□□□□ 0.75
Ccdc40Q8BI79 Cacng4-201ENSMUST00000021066 3500 ntAPPRIS P1 TSL 1 (best) BASIC19.75■□□□□ 0.75
Ccdc40Q8BI79 Gm42911-201ENSMUST00000199360 1630 ntBASIC19.75■□□□□ 0.75
Ccdc40Q8BI79 Gm10571-201ENSMUST00000097869 1638 ntBASIC19.75■□□□□ 0.75
Ccdc40Q8BI79 Rhbdd3-202ENSMUST00000101610 2333 ntAPPRIS P1 TSL 1 (best) BASIC19.75■□□□□ 0.75
Ccdc40Q8BI79 Hoxb3os-201ENSMUST00000131275 2315 ntTSL 3 BASIC19.75■□□□□ 0.75
Ccdc40Q8BI79 Ciz1-205ENSMUST00000113338 2666 ntAPPRIS P3 TSL 5 BASIC19.75■□□□□ 0.75
Ccdc40Q8BI79 Cers2-201ENSMUST00000015858 2216 ntAPPRIS P1 TSL 1 (best) BASIC19.75■□□□□ 0.75
Ccdc40Q8BI79 Jade1-202ENSMUST00000163764 5584 ntTSL 1 (best) BASIC19.75■□□□□ 0.75
Ccdc40Q8BI79 Pitx1-201ENSMUST00000021968 2451 ntAPPRIS P1 TSL 1 (best) BASIC19.75■□□□□ 0.75
Ccdc40Q8BI79 Cblc-201ENSMUST00000043822 1662 ntAPPRIS P1 TSL 1 (best) BASIC19.75■□□□□ 0.75
Ccdc40Q8BI79 Pcnp-202ENSMUST00000114444 2295 ntAPPRIS P1 TSL 1 (best) BASIC19.74■□□□□ 0.75
Ccdc40Q8BI79 E4f1-205ENSMUST00000226941 2642 ntAPPRIS ALT2 BASIC19.74■□□□□ 0.75
Ccdc40Q8BI79 Camk1-201ENSMUST00000032409 1496 ntAPPRIS P1 TSL 1 (best) BASIC19.74■□□□□ 0.75
Ccdc40Q8BI79 Fyn-204ENSMUST00000126486 2495 ntTSL 1 (best) BASIC19.74■□□□□ 0.75
Ccdc40Q8BI79 Mrm1-201ENSMUST00000018549 2477 ntAPPRIS P1 TSL 1 (best) BASIC19.74■□□□□ 0.75
Ccdc40Q8BI79 Pkig-204ENSMUST00000126182 762 ntAPPRIS P1 TSL 2 BASIC19.74■□□□□ 0.75
Ccdc40Q8BI79 Rps2-208ENSMUST00000170715 998 ntAPPRIS P1 TSL 1 (best) BASIC19.74■□□□□ 0.75
Ccdc40Q8BI79 Gon7-201ENSMUST00000173969 1152 ntAPPRIS P1 TSL 1 (best) BASIC19.74■□□□□ 0.75
Ccdc40Q8BI79 Ss18l2-201ENSMUST00000035113 577 ntAPPRIS P1 TSL 1 (best) BASIC19.74■□□□□ 0.75
Ccdc40Q8BI79 Rps2-201ENSMUST00000054289 1094 ntAPPRIS P1 TSL 1 (best) BASIC19.74■□□□□ 0.75
Ccdc40Q8BI79 1700007K13Rik-201ENSMUST00000086370 812 ntAPPRIS P1 TSL 1 (best) BASIC19.74■□□□□ 0.75
Ccdc40Q8BI79 Map2k2-207ENSMUST00000143517 2405 ntAPPRIS P3 TSL 1 (best) BASIC19.74■□□□□ 0.75
Ccdc40Q8BI79 Ccdc85c-201ENSMUST00000136175 1302 ntAPPRIS ALT2 TSL 5 BASIC19.74■□□□□ 0.75
Ccdc40Q8BI79 Cachd1-201ENSMUST00000030257 5765 ntAPPRIS P2 TSL 1 (best) BASIC19.74■□□□□ 0.75
Ccdc40Q8BI79 Astn2-202ENSMUST00000084496 4675 ntAPPRIS ALT2 TSL 5 BASIC19.73■□□□□ 0.75
Ccdc40Q8BI79 Pknox2-201ENSMUST00000039674 3632 ntAPPRIS P1 TSL 1 (best) BASIC19.73■□□□□ 0.75
Ccdc40Q8BI79 Hopxos-201ENSMUST00000148568 1661 ntTSL 1 (best) BASIC19.73■□□□□ 0.75
Ccdc40Q8BI79 Srp19-202ENSMUST00000119329 613 ntTSL 2 BASIC19.73■□□□□ 0.75
Ccdc40Q8BI79 Gm8493-201ENSMUST00000196881 489 ntBASIC19.73■□□□□ 0.75
Ccdc40Q8BI79 Med31-201ENSMUST00000021157 1161 ntAPPRIS P1 TSL 1 (best) BASIC19.73■□□□□ 0.75
Ccdc40Q8BI79 D830025C05Rik-201ENSMUST00000059474 976 ntBASIC19.73■□□□□ 0.75
Ccdc40Q8BI79 Gm19439-201ENSMUST00000198195 2273 ntBASIC19.73■□□□□ 0.75
Ccdc40Q8BI79 Def6-201ENSMUST00000002327 2277 ntAPPRIS P1 TSL 1 (best) BASIC19.73■□□□□ 0.75
Ccdc40Q8BI79 Larp6-201ENSMUST00000038407 2440 ntAPPRIS P1 TSL 1 (best) BASIC19.73■□□□□ 0.75
Ccdc40Q8BI79 Cyp4f13-201ENSMUST00000075253 1752 ntAPPRIS P1 TSL 1 (best) BASIC19.72■□□□□ 0.75
Ccdc40Q8BI79 Map4k4-202ENSMUST00000168431 5632 ntAPPRIS ALT2 TSL 5 BASIC19.72■□□□□ 0.75
Ccdc40Q8BI79 Mta1-201ENSMUST00000009099 2826 ntAPPRIS ALT2 TSL 5 BASIC19.72■□□□□ 0.75
Ccdc40Q8BI79 Gna11-201ENSMUST00000043604 3414 ntAPPRIS P1 TSL 1 (best) BASIC19.72■□□□□ 0.75
Ccdc40Q8BI79 Jph1-201ENSMUST00000038382 4809 ntAPPRIS P1 TSL 1 (best) BASIC19.72■□□□□ 0.75
Ccdc40Q8BI79 Cdv3-ps-201ENSMUST00000169632 827 ntBASIC19.72■□□□□ 0.75
Ccdc40Q8BI79 Dnajb2-206ENSMUST00000187058 1732 ntTSL 1 (best) BASIC19.72■□□□□ 0.75
Ccdc40Q8BI79 Gm20163-202ENSMUST00000212288 989 ntTSL 1 (best) BASIC19.72■□□□□ 0.75
Ccdc40Q8BI79 Pla2g12a-201ENSMUST00000029629 1561 ntAPPRIS P1 TSL 1 (best) BASIC19.72■□□□□ 0.75
Ccdc40Q8BI79 Sstr1-201ENSMUST00000044299 2014 ntAPPRIS P1 TSL 1 (best) BASIC19.72■□□□□ 0.75
Ccdc40Q8BI79 Fkbp9-201ENSMUST00000031795 3009 ntAPPRIS P1 TSL 1 (best) BASIC19.72■□□□□ 0.75
Ccdc40Q8BI79 Tmem260-209ENSMUST00000226422 6333 ntAPPRIS ALT2 BASIC19.72■□□□□ 0.75
Ccdc40Q8BI79 Lhx6-205ENSMUST00000112967 3378 ntTSL 1 (best) BASIC19.72■□□□□ 0.75
Ccdc40Q8BI79 Ttc19-201ENSMUST00000050646 3410 ntAPPRIS P3 TSL 1 (best) BASIC19.72■□□□□ 0.75
Ccdc40Q8BI79 Fam105a-203ENSMUST00000226170 3043 ntBASIC19.71■□□□□ 0.75
Ccdc40Q8BI79 Agpat3-201ENSMUST00000001240 5980 ntAPPRIS P1 TSL 1 (best) BASIC19.71■□□□□ 0.75
Ccdc40Q8BI79 Arhgef1-204ENSMUST00000117796 3508 ntAPPRIS ALT2 TSL 1 (best) BASIC19.71■□□□□ 0.75
Ccdc40Q8BI79 Espn-210ENSMUST00000105656 1593 ntTSL 5 BASIC19.71■□□□□ 0.75
Ccdc40Q8BI79 Lypla2-202ENSMUST00000105852 1588 ntAPPRIS P1 TSL 1 (best) BASIC19.71■□□□□ 0.75
Ccdc40Q8BI79 Cdkn2a-202ENSMUST00000107131 895 ntAPPRIS P1 TSL 1 (best) BASIC19.71■□□□□ 0.75
Ccdc40Q8BI79 Tmem9-202ENSMUST00000117950 847 ntAPPRIS P1 TSL 2 BASIC19.71■□□□□ 0.75
Ccdc40Q8BI79 Gm12660-201ENSMUST00000123764 664 ntTSL 3 BASIC19.71■□□□□ 0.75
Ccdc40Q8BI79 Sox8-202ENSMUST00000173447 928 ntAPPRIS ALT2 TSL 1 (best) BASIC19.71■□□□□ 0.75
Ccdc40Q8BI79 Gm43173-201ENSMUST00000202246 593 ntBASIC19.71■□□□□ 0.75
Ccdc40Q8BI79 Erh-201ENSMUST00000021559 1293 ntAPPRIS P1 TSL 1 (best) BASIC19.71■□□□□ 0.75
Ccdc40Q8BI79 Wipi2-202ENSMUST00000110778 1959 ntAPPRIS P1 TSL 5 BASIC19.71■□□□□ 0.75
Ccdc40Q8BI79 Chtop-202ENSMUST00000049937 2012 ntAPPRIS P1 TSL 1 (best) BASIC19.71■□□□□ 0.75
Ccdc40Q8BI79 Fam105a-202ENSMUST00000226145 2950 ntAPPRIS P1 BASIC19.71■□□□□ 0.75
Ccdc40Q8BI79 Gnb5-206ENSMUST00000215875 2105 ntAPPRIS P1 TSL 1 (best) BASIC19.7■□□□□ 0.74
Ccdc40Q8BI79 Kcns1-201ENSMUST00000045196 2712 ntAPPRIS P1 TSL 1 (best) BASIC19.7■□□□□ 0.74
Ccdc40Q8BI79 Armc10-202ENSMUST00000095495 2700 ntTSL 1 (best) BASIC19.7■□□□□ 0.74
Ccdc40Q8BI79 Gas2-203ENSMUST00000107591 2232 ntAPPRIS P1 TSL 1 (best) BASIC19.7■□□□□ 0.74
Ccdc40Q8BI79 Zfp282-201ENSMUST00000061890 5573 ntAPPRIS P1 TSL 1 (best) BASIC19.7■□□□□ 0.74
Ccdc40Q8BI79 AC165080.2-201ENSMUST00000217491 1530 ntBASIC19.7■□□□□ 0.74
Ccdc40Q8BI79 Mex3b-201ENSMUST00000082237 3355 ntAPPRIS P1 TSL 2 BASIC19.7■□□□□ 0.74
Ccdc40Q8BI79 Rock2-201ENSMUST00000020904 7644 ntAPPRIS P1 TSL 5 BASIC19.7■□□□□ 0.74
Ccdc40Q8BI79 Wdr41-202ENSMUST00000159647 2289 ntTSL 5 BASIC19.69■□□□□ 0.74
Ccdc40Q8BI79 Wdr41-206ENSMUST00000167155 2289 ntTSL 1 (best) BASIC19.69■□□□□ 0.74
Ccdc40Q8BI79 Tmem234-201ENSMUST00000102591 1437 ntAPPRIS P1 TSL 1 (best) BASIC19.69■□□□□ 0.74
Ccdc40Q8BI79 Hnrnpab-203ENSMUST00000109103 1437 ntAPPRIS ALT2 TSL 1 (best) BASIC19.69■□□□□ 0.74
Ccdc40Q8BI79 Lca5l-201ENSMUST00000054855 2508 ntAPPRIS P2 TSL 1 (best) BASIC19.69■□□□□ 0.74
Ccdc40Q8BI79 Hsf1-204ENSMUST00000226872 2104 ntBASIC19.69■□□□□ 0.74
Ccdc40Q8BI79 Chpt1-203ENSMUST00000117440 4863 ntAPPRIS ALT2 TSL 5 BASIC19.69■□□□□ 0.74
Ccdc40Q8BI79 Fgfr3-202ENSMUST00000087820 2630 ntAPPRIS ALT2 TSL 5 BASIC19.69■□□□□ 0.74
Ccdc40Q8BI79 Prss16-201ENSMUST00000006341 2155 ntAPPRIS P1 TSL 1 (best) BASIC19.69■□□□□ 0.74
Ccdc40Q8BI79 Mgat4b-201ENSMUST00000041725 2429 ntAPPRIS P1 TSL 1 (best) BASIC19.69■□□□□ 0.74
Ccdc40Q8BI79 6430500D05Rik-201ENSMUST00000198286 1176 ntBASIC19.69■□□□□ 0.74
Ccdc40Q8BI79 Gp1bb-201ENSMUST00000051160 645 ntAPPRIS P3 BASIC19.69■□□□□ 0.74
Ccdc40Q8BI79 Hexa-201ENSMUST00000026262 1996 ntAPPRIS P1 TSL 1 (best) BASIC19.69■□□□□ 0.74
Ccdc40Q8BI79 Arl4c-203ENSMUST00000187810 2740 ntAPPRIS P1 TSL 1 (best) BASIC19.69■□□□□ 0.74
Ccdc40Q8BI79 Ehmt2-203ENSMUST00000097342 3934 ntAPPRIS ALT2 TSL 1 (best) BASIC19.69■□□□□ 0.74
Ccdc40Q8BI79 Mprip-203ENSMUST00000108751 4021 ntAPPRIS ALT2 TSL 1 (best) BASIC19.68■□□□□ 0.74
Ccdc40Q8BI79 Ebf3-201ENSMUST00000033378 4838 ntAPPRIS P3 TSL 1 (best) BASIC19.68■□□□□ 0.74
Ccdc40Q8BI79 Gm20100-201ENSMUST00000209418 2272 ntBASIC19.68■□□□□ 0.74
Ccdc40Q8BI79 Ttc39a-203ENSMUST00000106619 1778 ntTSL 1 (best) BASIC19.68■□□□□ 0.74
Ccdc40Q8BI79 5033417F24Rik-201ENSMUST00000181575 1787 ntTSL 1 (best) BASIC19.68■□□□□ 0.74
Ccdc40Q8BI79 Gfi1-203ENSMUST00000159164 2648 ntAPPRIS P3 TSL 1 (best) BASIC19.68■□□□□ 0.74
Ccdc40Q8BI79 Hpca-204ENSMUST00000116444 1847 ntAPPRIS P1 TSL 5 BASIC19.68■□□□□ 0.74
Ccdc40Q8BI79 Psme3-201ENSMUST00000019470 2664 ntAPPRIS P1 TSL 1 (best) BASIC19.68■□□□□ 0.74
Ccdc40Q8BI79 Paip2-204ENSMUST00000115736 857 ntAPPRIS P1 TSL 3 BASIC19.68■□□□□ 0.74
Ccdc40Q8BI79 Smad6-203ENSMUST00000179458 273 ntBASIC19.68■□□□□ 0.74
Ccdc40Q8BI79 Gtsf1-201ENSMUST00000023129 819 ntAPPRIS P1 TSL 1 (best) BASIC19.68■□□□□ 0.74
Ccdc40Q8BI79 Rcor3-203ENSMUST00000192128 1578 ntAPPRIS P3 TSL 1 (best) BASIC19.68■□□□□ 0.74
Ccdc40Q8BI79 Srsf4-202ENSMUST00000053819 2257 ntAPPRIS P1 TSL 1 (best) BASIC19.68■□□□□ 0.74
Ccdc40Q8BI79 Rusc2-201ENSMUST00000035645 5300 ntAPPRIS P1 TSL 1 (best) BASIC19.67■□□□□ 0.74
Retrieved 100 of 76,532 protein–RNA pairs in 16.6 ms