Protein–RNA interactions for Protein: Q78JW9

Ubfd1, Ubiquitin domain-containing protein UBFD1, mousemouse

Predictions only

Length 368 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Ubfd1Q78JW9 Mpp6-201ENSMUST00000036225 1896 ntTSL 1 (best) BASIC18.57■□□□□ 0.56
Ubfd1Q78JW9 Clta-201ENSMUST00000107845 1031 ntAPPRIS ALT2 TSL 2 BASIC18.57■□□□□ 0.56
Ubfd1Q78JW9 Atraid-201ENSMUST00000013766 966 ntAPPRIS P2 TSL 1 (best) BASIC18.57■□□□□ 0.56
Ubfd1Q78JW9 Ypel3-201ENSMUST00000038614 973 ntAPPRIS P1 TSL 1 (best) BASIC18.57■□□□□ 0.56
Ubfd1Q78JW9 Zfp444-203ENSMUST00000108566 1648 ntAPPRIS P1 TSL 1 (best) BASIC18.56■□□□□ 0.56
Ubfd1Q78JW9 Fam3c-203ENSMUST00000163963 1617 ntTSL 1 (best) BASIC18.56■□□□□ 0.56
Ubfd1Q78JW9 Glipr2-201ENSMUST00000030202 2320 ntAPPRIS P1 TSL 1 (best) BASIC18.56■□□□□ 0.56
Ubfd1Q78JW9 Krt79-201ENSMUST00000023799 2097 ntAPPRIS P1 TSL 1 (best) BASIC18.56■□□□□ 0.56
Ubfd1Q78JW9 St3gal4-201ENSMUST00000034537 2095 ntAPPRIS P1 TSL 1 (best) BASIC18.56■□□□□ 0.56
Ubfd1Q78JW9 Kcne1l-201ENSMUST00000134825 1543 ntAPPRIS P1 BASIC18.56■□□□□ 0.56
Ubfd1Q78JW9 Etv2-201ENSMUST00000108147 1048 ntAPPRIS P1 TSL 1 (best) BASIC18.56■□□□□ 0.56
Ubfd1Q78JW9 3110082J24Rik-201ENSMUST00000127749 327 ntAPPRIS P1 TSL 5 BASIC18.56■□□□□ 0.56
Ubfd1Q78JW9 Anapc13-204ENSMUST00000190279 589 ntAPPRIS P1 TSL 1 (best) BASIC18.56■□□□□ 0.56
Ubfd1Q78JW9 Gm44210-201ENSMUST00000205253 713 ntTSL 3 BASIC18.56■□□□□ 0.56
Ubfd1Q78JW9 Cldn3-201ENSMUST00000094245 1259 ntAPPRIS P1 BASIC18.56■□□□□ 0.56
Ubfd1Q78JW9 2310022B05Rik-201ENSMUST00000034464 3307 ntAPPRIS P1 TSL 1 (best) BASIC18.56■□□□□ 0.56
Ubfd1Q78JW9 Idnk-202ENSMUST00000109868 1462 ntTSL 1 (best) BASIC18.56■□□□□ 0.56
Ubfd1Q78JW9 Pllp-201ENSMUST00000034227 1926 ntAPPRIS P1 TSL 1 (best) BASIC18.56■□□□□ 0.56
Ubfd1Q78JW9 Stau2-217ENSMUST00000162751 3030 ntAPPRIS P1 TSL 1 (best) BASIC18.56■□□□□ 0.56
Ubfd1Q78JW9 Rasgrp2-206ENSMUST00000113472 2124 ntTSL 1 (best) BASIC18.56■□□□□ 0.56
Ubfd1Q78JW9 Rchy1-204ENSMUST00000169948 1417 ntTSL 3 BASIC18.56■□□□□ 0.56
Ubfd1Q78JW9 Akr1a1-201ENSMUST00000030455 1420 ntAPPRIS P1 TSL 1 (best) BASIC18.56■□□□□ 0.56
Ubfd1Q78JW9 Ppm1n-201ENSMUST00000032560 1648 ntAPPRIS P1 TSL 1 (best) BASIC18.56■□□□□ 0.56
Ubfd1Q78JW9 Coq9-201ENSMUST00000034234 1789 ntAPPRIS P1 TSL 1 (best) BASIC18.55■□□□□ 0.56
Ubfd1Q78JW9 Kdm1a-203ENSMUST00000116273 3008 ntAPPRIS P3 TSL 1 (best) BASIC18.55■□□□□ 0.56
Ubfd1Q78JW9 Socs2-213ENSMUST00000170690 2195 ntAPPRIS P1 TSL 3 BASIC18.55■□□□□ 0.56
Ubfd1Q78JW9 Schip1-205ENSMUST00000182532 2059 ntTSL 1 (best) BASIC18.55■□□□□ 0.56
Ubfd1Q78JW9 Nfe2-201ENSMUST00000075192 1697 ntAPPRIS P1 TSL 1 (best) BASIC18.55■□□□□ 0.56
Ubfd1Q78JW9 Nt5c-201ENSMUST00000021082 858 ntAPPRIS P1 TSL 1 (best) BASIC18.55■□□□□ 0.56
Ubfd1Q78JW9 AC175538.2-202ENSMUST00000224997 1057 ntAPPRIS P1 BASIC18.55■□□□□ 0.56
Ubfd1Q78JW9 Nudt14-201ENSMUST00000002881 734 ntTSL 2 BASIC18.55■□□□□ 0.56
Ubfd1Q78JW9 a-201ENSMUST00000029123 731 ntAPPRIS P1 TSL 1 (best) BASIC18.55■□□□□ 0.56
Ubfd1Q78JW9 Gm30003-201ENSMUST00000200700 1433 ntTSL 1 (best) BASIC18.55■□□□□ 0.56
Ubfd1Q78JW9 Rbfox3-202ENSMUST00000069343 1553 ntTSL 1 (best) BASIC18.55■□□□□ 0.56
Ubfd1Q78JW9 Slc35a3-201ENSMUST00000029569 5725 ntAPPRIS P1 TSL 1 (best) BASIC18.54■□□□□ 0.56
Ubfd1Q78JW9 Nkx2-1-202ENSMUST00000178477 2242 ntAPPRIS P1 TSL 1 (best) BASIC18.54■□□□□ 0.56
Ubfd1Q78JW9 Fbxw8-201ENSMUST00000049474 5000 ntAPPRIS P1 TSL 1 (best) BASIC18.54■□□□□ 0.56
Ubfd1Q78JW9 Chst12-201ENSMUST00000043050 2331 ntAPPRIS P1 TSL 1 (best) BASIC18.54■□□□□ 0.56
Ubfd1Q78JW9 Smim27-201ENSMUST00000129758 1044 ntAPPRIS P1 TSL 1 (best) BASIC18.54■□□□□ 0.56
Ubfd1Q78JW9 Gm3807-201ENSMUST00000193520 1168 ntBASIC18.54■□□□□ 0.56
Ubfd1Q78JW9 A930018P22Rik-201ENSMUST00000040374 822 ntAPPRIS P1 TSL 1 (best) BASIC18.54■□□□□ 0.56
Ubfd1Q78JW9 Psenen-201ENSMUST00000043898 708 ntAPPRIS P1 TSL 1 (best) BASIC18.54■□□□□ 0.56
Ubfd1Q78JW9 Adap2-201ENSMUST00000021050 1785 ntAPPRIS P1 TSL 1 (best) BASIC18.54■□□□□ 0.56
Ubfd1Q78JW9 Slc35f4-201ENSMUST00000074368 1931 ntAPPRIS P1 TSL 1 (best) BASIC18.54■□□□□ 0.56
Ubfd1Q78JW9 D16Ertd472e-202ENSMUST00000114219 1576 ntAPPRIS P1 TSL 1 (best) BASIC18.54■□□□□ 0.56
Ubfd1Q78JW9 Pigt-202ENSMUST00000117066 1712 ntAPPRIS ALT2 TSL 1 (best) BASIC18.54■□□□□ 0.56
Ubfd1Q78JW9 Rell2-210ENSMUST00000176104 2150 ntAPPRIS P1 TSL 5 BASIC18.54■□□□□ 0.56
Ubfd1Q78JW9 Hmx2-202ENSMUST00000183219 1546 ntAPPRIS P1 TSL 1 (best) BASIC18.54■□□□□ 0.56
Ubfd1Q78JW9 Sigmar1-201ENSMUST00000059354 1640 ntAPPRIS P1 TSL 1 (best) BASIC18.53■□□□□ 0.56
Ubfd1Q78JW9 Eefsec-206ENSMUST00000205179 2208 ntTSL 1 (best) BASIC18.53■□□□□ 0.56
Ubfd1Q78JW9 Adgrv1-211ENSMUST00000146749 1592 ntTSL 1 (best) BASIC18.53■□□□□ 0.56
Ubfd1Q78JW9 Nrg3-203ENSMUST00000173780 2137 ntAPPRIS ALT2 TSL 5 BASIC18.53■□□□□ 0.56
Ubfd1Q78JW9 9430060I03Rik-201ENSMUST00000191563 1689 ntTSL 1 (best) BASIC18.53■□□□□ 0.56
Ubfd1Q78JW9 Tuba3a-201ENSMUST00000088246 1509 ntAPPRIS P1 TSL 1 (best) BASIC18.53■□□□□ 0.56
Ubfd1Q78JW9 Dmwd-202ENSMUST00000108479 2388 ntAPPRIS ALT2 TSL 5 BASIC18.53■□□□□ 0.56
Ubfd1Q78JW9 9130221H12Rik-201ENSMUST00000169914 1465 ntTSL 1 (best) BASIC18.52■□□□□ 0.56
Ubfd1Q78JW9 Sox12-202ENSMUST00000182625 4453 ntAPPRIS P1 BASIC18.52■□□□□ 0.56
Ubfd1Q78JW9 Trp73-204ENSMUST00000105644 5042 ntAPPRIS P3 TSL 1 (best) BASIC18.52■□□□□ 0.56
Ubfd1Q78JW9 Atmin-201ENSMUST00000109099 4877 ntAPPRIS P1 TSL 1 (best) BASIC18.52■□□□□ 0.56
Ubfd1Q78JW9 Ccdc85c-202ENSMUST00000222310 4298 ntAPPRIS P2 TSL 5 BASIC18.52■□□□□ 0.56
Ubfd1Q78JW9 Sphk1-203ENSMUST00000100201 1800 ntAPPRIS ALT2 TSL 1 (best) BASIC18.52■□□□□ 0.56
Ubfd1Q78JW9 A230065N10Rik-201ENSMUST00000172178 1028 ntBASIC18.52■□□□□ 0.56
Ubfd1Q78JW9 Mcl1-202ENSMUST00000178686 858 ntAPPRIS ALT2 TSL 1 (best) BASIC18.52■□□□□ 0.56
Ubfd1Q78JW9 Uqcc2-201ENSMUST00000025045 500 ntAPPRIS P1 TSL 1 (best) BASIC18.52■□□□□ 0.56
Ubfd1Q78JW9 Ankrd37-201ENSMUST00000053558 927 ntAPPRIS P1 TSL 1 (best) BASIC18.52■□□□□ 0.56
Ubfd1Q78JW9 Tcap-201ENSMUST00000008021 948 ntAPPRIS P1 TSL 1 (best) BASIC18.52■□□□□ 0.56
Ubfd1Q78JW9 AC131586.2-201ENSMUST00000228370 1512 ntBASIC18.52■□□□□ 0.56
Ubfd1Q78JW9 Arid3c-204ENSMUST00000171251 1751 ntAPPRIS P3 TSL 5 BASIC18.52■□□□□ 0.55
Ubfd1Q78JW9 Pkmyt1-201ENSMUST00000024701 2039 ntAPPRIS P1 TSL 1 (best) BASIC18.52■□□□□ 0.55
Ubfd1Q78JW9 Map3k21-201ENSMUST00000034316 5693 ntAPPRIS P1 TSL 1 (best) BASIC18.52■□□□□ 0.55
Ubfd1Q78JW9 Elf2-212ENSMUST00000194641 5919 ntAPPRIS P3 TSL 5 BASIC18.51■□□□□ 0.55
Ubfd1Q78JW9 Ube2d-ps-204ENSMUST00000137510 1846 ntTSL 1 (best) BASIC18.51■□□□□ 0.55
Ubfd1Q78JW9 AC123857.1-201ENSMUST00000181053 2312 ntTSL 1 (best) BASIC18.51■□□□□ 0.55
Ubfd1Q78JW9 Mpz-201ENSMUST00000070758 2002 ntAPPRIS P1 TSL 1 (best) BASIC18.51■□□□□ 0.55
Ubfd1Q78JW9 Gm13148-201ENSMUST00000118892 745 ntBASIC18.51■□□□□ 0.55
Ubfd1Q78JW9 2300009A05Rik-201ENSMUST00000168665 595 ntAPPRIS P1 TSL 1 (best) BASIC18.51■□□□□ 0.55
Ubfd1Q78JW9 AC167978.1-201ENSMUST00000182488 456 ntTSL 3 BASIC18.51■□□□□ 0.55
Ubfd1Q78JW9 Kcng2-201ENSMUST00000077962 2813 ntAPPRIS P1 TSL 5 BASIC18.51■□□□□ 0.55
Ubfd1Q78JW9 H2afx-201ENSMUST00000052686 1384 ntAPPRIS P1 BASIC18.51■□□□□ 0.55
Ubfd1Q78JW9 Tedc1-201ENSMUST00000049271 2441 ntAPPRIS P1 TSL 1 (best) BASIC18.51■□□□□ 0.55
Ubfd1Q78JW9 Mmp24-201ENSMUST00000029141 4306 ntAPPRIS P1 TSL 1 (best) BASIC18.5■□□□□ 0.55
Ubfd1Q78JW9 Fam19a5-201ENSMUST00000068088 2575 ntAPPRIS P1 TSL 1 (best) BASIC18.5■□□□□ 0.55
Ubfd1Q78JW9 Cers2-201ENSMUST00000015858 2216 ntAPPRIS P1 TSL 1 (best) BASIC18.5■□□□□ 0.55
Ubfd1Q78JW9 Gprc5c-201ENSMUST00000021071 2200 ntAPPRIS P3 TSL 1 (best) BASIC18.5■□□□□ 0.55
Ubfd1Q78JW9 Cd37-209ENSMUST00000211373 1428 ntAPPRIS ALT2 TSL 1 (best) BASIC18.5■□□□□ 0.55
Ubfd1Q78JW9 Zfp523-202ENSMUST00000073534 2654 ntAPPRIS P1 TSL 5 BASIC18.5■□□□□ 0.55
Ubfd1Q78JW9 Rxrb-201ENSMUST00000044858 2623 ntAPPRIS P4 TSL 1 (best) BASIC18.5■□□□□ 0.55
Ubfd1Q78JW9 Gm6211-202ENSMUST00000167849 925 ntBASIC18.5■□□□□ 0.55
Ubfd1Q78JW9 Slc7a6os-201ENSMUST00000035925 1246 ntAPPRIS P1 TSL 1 (best) BASIC18.5■□□□□ 0.55
Ubfd1Q78JW9 Ctf1-201ENSMUST00000047393 1352 ntAPPRIS P1 TSL 1 (best) BASIC18.5■□□□□ 0.55
Ubfd1Q78JW9 Hira-201ENSMUST00000004222 4218 ntAPPRIS P1 TSL 1 (best) BASIC18.5■□□□□ 0.55
Ubfd1Q78JW9 Lhx2-203ENSMUST00000143783 1696 ntTSL 1 (best) BASIC18.5■□□□□ 0.55
Ubfd1Q78JW9 Paqr6-204ENSMUST00000147991 1670 ntAPPRIS P1 TSL 1 (best) BASIC18.5■□□□□ 0.55
Ubfd1Q78JW9 Gm45640-201ENSMUST00000210665 1896 ntBASIC18.5■□□□□ 0.55
Ubfd1Q78JW9 Tssk6-201ENSMUST00000050373 1335 ntAPPRIS P1 BASIC18.49■□□□□ 0.55
Ubfd1Q78JW9 Vgf-202ENSMUST00000186451 2277 ntAPPRIS P1 TSL 5 BASIC18.49■□□□□ 0.55
Ubfd1Q78JW9 Crlf2-203ENSMUST00000200284 1405 ntAPPRIS ALT2 TSL 1 (best) BASIC18.49■□□□□ 0.55
Ubfd1Q78JW9 Metap1-201ENSMUST00000029804 2686 ntAPPRIS P1 TSL 1 (best) BASIC18.49■□□□□ 0.55
Ubfd1Q78JW9 Alg9-201ENSMUST00000034561 2873 ntAPPRIS P1 TSL 1 (best) BASIC18.49■□□□□ 0.55
Ubfd1Q78JW9 Mapre3-202ENSMUST00000200692 1816 ntTSL 5 BASIC18.49■□□□□ 0.55
Retrieved 100 of 76,532 protein–RNA pairs in 29.4 ms