Protein–RNA interactions for Protein: Q6PFF0

Scaf4, SR-related CTD-associated factor 4, mousemouse

Known RBP Predictions only

Length 1,209 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Scaf4Q6PFF0 Cacul1-203ENSMUST00000166712 5700 ntAPPRIS ALT2 TSL 5 BASIC18.78■□□□□ 0.6
Scaf4Q6PFF0 Anp32e-210ENSMUST00000171368 878 ntTSL 3 BASIC18.78■□□□□ 0.6
Scaf4Q6PFF0 Gm22238-201ENSMUST00000175222 88 ntBASIC18.78■□□□□ 0.6
Scaf4Q6PFF0 Gm5522-201ENSMUST00000189483 1242 ntBASIC18.78■□□□□ 0.6
Scaf4Q6PFF0 5330438D12Rik-201ENSMUST00000064101 2229 ntBASIC18.78■□□□□ 0.6
Scaf4Q6PFF0 Cdkl3-206ENSMUST00000109079 2051 ntAPPRIS ALT2 TSL 5 BASIC18.78■□□□□ 0.6
Scaf4Q6PFF0 Cdkl3-208ENSMUST00000109081 2063 ntAPPRIS ALT2 TSL 5 BASIC18.78■□□□□ 0.6
Scaf4Q6PFF0 Mgme1-203ENSMUST00000110028 2308 ntAPPRIS P1 TSL 1 (best) BASIC18.78■□□□□ 0.6
Scaf4Q6PFF0 Klhl36-201ENSMUST00000034287 2181 ntAPPRIS P1 TSL 1 (best) BASIC18.78■□□□□ 0.6
Scaf4Q6PFF0 Matk-204ENSMUST00000120265 1618 ntAPPRIS ALT2 TSL 5 BASIC18.78■□□□□ 0.6
Scaf4Q6PFF0 Src-203ENSMUST00000109529 2020 ntTSL 1 (best) BASIC18.78■□□□□ 0.6
Scaf4Q6PFF0 Slc25a10-201ENSMUST00000026899 2023 ntAPPRIS P1 TSL 1 (best) BASIC18.78■□□□□ 0.6
Scaf4Q6PFF0 Sec61a2-202ENSMUST00000102981 2448 ntAPPRIS P1 TSL 1 (best) BASIC18.78■□□□□ 0.6
Scaf4Q6PFF0 Gas2l1-203ENSMUST00000109895 2530 ntAPPRIS P3 TSL 1 (best) BASIC18.77■□□□□ 0.6
Scaf4Q6PFF0 Moap1-201ENSMUST00000173760 1312 ntAPPRIS P1 TSL 2 BASIC18.77■□□□□ 0.6
Scaf4Q6PFF0 Col9a3-203ENSMUST00000132527 3046 ntAPPRIS P1 TSL 5 BASIC18.77■□□□□ 0.6
Scaf4Q6PFF0 Dtx4-201ENSMUST00000045521 5765 ntAPPRIS P1 TSL 1 (best) BASIC18.77■□□□□ 0.6
Scaf4Q6PFF0 Tmem39b-201ENSMUST00000102588 1810 ntAPPRIS P1 TSL 1 (best) BASIC18.77■□□□□ 0.6
Scaf4Q6PFF0 Gm5540-201ENSMUST00000131852 1848 ntBASIC18.77■□□□□ 0.6
Scaf4Q6PFF0 Wtap-205ENSMUST00000160781 2442 ntTSL 1 (best) BASIC18.77■□□□□ 0.6
Scaf4Q6PFF0 Gm14424-201ENSMUST00000143191 895 ntTSL 1 (best) BASIC18.77■□□□□ 0.6
Scaf4Q6PFF0 Pgls-205ENSMUST00000143441 1062 ntTSL 3 BASIC18.77■□□□□ 0.6
Scaf4Q6PFF0 Hsd17b3-202ENSMUST00000166224 1286 ntAPPRIS P1 TSL 2 BASIC18.77■□□□□ 0.6
Scaf4Q6PFF0 Gm46212-201ENSMUST00000220256 1003 ntTSL 5 BASIC18.77■□□□□ 0.6
Scaf4Q6PFF0 Fbxo7-202ENSMUST00000117597 1799 ntAPPRIS ALT2 TSL 1 (best) BASIC18.77■□□□□ 0.6
Scaf4Q6PFF0 Asphd1-203ENSMUST00000106340 1647 ntAPPRIS ALT2 TSL 1 (best) BASIC18.77■□□□□ 0.6
Scaf4Q6PFF0 Foxp1-230ENSMUST00000177437 2468 ntAPPRIS P2 TSL 1 (best) BASIC18.77■□□□□ 0.59
Scaf4Q6PFF0 1110004F10Rik-201ENSMUST00000032899 1479 ntAPPRIS P1 TSL 1 (best) BASIC18.77■□□□□ 0.59
Scaf4Q6PFF0 Zfp706-201ENSMUST00000078976 4417 ntAPPRIS P1 TSL 1 (best) BASIC18.77■□□□□ 0.59
Scaf4Q6PFF0 Pip5k1c-202ENSMUST00000105327 2551 ntAPPRIS P3 TSL 1 (best) BASIC18.77■□□□□ 0.59
Scaf4Q6PFF0 Kcnb1-201ENSMUST00000059826 4015 ntAPPRIS P1 TSL 1 (best) BASIC18.77■□□□□ 0.59
Scaf4Q6PFF0 Zfp618-201ENSMUST00000030043 1582 ntTSL 1 (best) BASIC18.76■□□□□ 0.59
Scaf4Q6PFF0 Hnrnpab-203ENSMUST00000109103 1437 ntAPPRIS ALT2 TSL 1 (best) BASIC18.76■□□□□ 0.59
Scaf4Q6PFF0 Larp1b-202ENSMUST00000048490 2354 ntAPPRIS P2 TSL 1 (best) BASIC18.76■□□□□ 0.59
Scaf4Q6PFF0 Slc30a4-202ENSMUST00000099457 3170 ntTSL 1 (best) BASIC18.76■□□□□ 0.59
Scaf4Q6PFF0 Mafg-201ENSMUST00000058162 4923 ntAPPRIS P1 TSL 1 (best) BASIC18.76■□□□□ 0.59
Scaf4Q6PFF0 Gm2415-203ENSMUST00000149952 435 ntTSL 5 BASIC18.76■□□□□ 0.59
Scaf4Q6PFF0 Hrasls-204ENSMUST00000162747 854 ntAPPRIS P1 TSL 1 (best) BASIC18.76■□□□□ 0.59
Scaf4Q6PFF0 Dtymk-201ENSMUST00000027503 1003 ntAPPRIS P1 TSL 1 (best) BASIC18.76■□□□□ 0.59
Scaf4Q6PFF0 Shisa7-203ENSMUST00000119433 3481 ntAPPRIS P2 TSL 1 (best) BASIC18.76■□□□□ 0.59
Scaf4Q6PFF0 Snrnp70-201ENSMUST00000074575 1735 ntAPPRIS P1 TSL 1 (best) BASIC18.76■□□□□ 0.59
Scaf4Q6PFF0 Bhlhe22-201ENSMUST00000026120 3344 ntAPPRIS P1 BASIC18.76■□□□□ 0.59
Scaf4Q6PFF0 Ntn5-201ENSMUST00000107742 1574 ntTSL 1 (best) BASIC18.76■□□□□ 0.59
Scaf4Q6PFF0 Plekhm2-202ENSMUST00000084203 4136 ntAPPRIS P3 TSL 5 BASIC18.76■□□□□ 0.59
Scaf4Q6PFF0 Them6-201ENSMUST00000070923 1784 ntAPPRIS P1 TSL 1 (best) BASIC18.76■□□□□ 0.59
Scaf4Q6PFF0 Cdca4-201ENSMUST00000062092 2425 ntAPPRIS P1 TSL 1 (best) BASIC18.75■□□□□ 0.59
Scaf4Q6PFF0 Gas1-201ENSMUST00000065086 2961 ntAPPRIS ALT2 BASIC18.75■□□□□ 0.59
Scaf4Q6PFF0 Cyth2-202ENSMUST00000107729 2519 ntAPPRIS P2 TSL 1 (best) BASIC18.75■□□□□ 0.59
Scaf4Q6PFF0 Cacul1-202ENSMUST00000111460 5561 ntAPPRIS ALT2 TSL 1 (best) BASIC18.75■□□□□ 0.59
Scaf4Q6PFF0 Cckbr-201ENSMUST00000033189 2573 ntAPPRIS P1 TSL 1 (best) BASIC18.75■□□□□ 0.59
Scaf4Q6PFF0 Mfsd6-205ENSMUST00000156876 4932 ntAPPRIS P4 TSL 5 BASIC18.75■□□□□ 0.59
Scaf4Q6PFF0 Maff-201ENSMUST00000096350 1933 ntAPPRIS P1 TSL 1 (best) BASIC18.75■□□□□ 0.59
Scaf4Q6PFF0 Rnf187-202ENSMUST00000217262 711 ntAPPRIS P2 TSL 1 (best) BASIC18.75■□□□□ 0.59
Scaf4Q6PFF0 Slc35a2-209ENSMUST00000208397 1374 ntAPPRIS ALT2 TSL 5 BASIC18.75■□□□□ 0.59
Scaf4Q6PFF0 Tial1-201ENSMUST00000033135 1580 ntAPPRIS ALT1 TSL 1 (best) BASIC18.75■□□□□ 0.59
Scaf4Q6PFF0 Gxylt1-201ENSMUST00000049484 6611 ntAPPRIS P3 TSL 1 (best) BASIC18.75■□□□□ 0.59
Scaf4Q6PFF0 Ncor1-203ENSMUST00000069456 3171 ntTSL 1 (best) BASIC18.75■□□□□ 0.59
Scaf4Q6PFF0 Soga1-201ENSMUST00000069098 7864 ntAPPRIS P1 TSL 1 (best) BASIC18.75■□□□□ 0.59
Scaf4Q6PFF0 Nkiras2-203ENSMUST00000107376 1727 ntAPPRIS P1 TSL 5 BASIC18.74■□□□□ 0.59
Scaf4Q6PFF0 Ssc4d-203ENSMUST00000111152 2745 ntAPPRIS P1 TSL 5 BASIC18.74■□□□□ 0.59
Scaf4Q6PFF0 Cyp4f15-204ENSMUST00000168171 2168 ntAPPRIS P3 TSL 1 (best) BASIC18.74■□□□□ 0.59
Scaf4Q6PFF0 Taf4b-201ENSMUST00000169862 5149 ntAPPRIS P1 TSL 5 BASIC18.74■□□□□ 0.59
Scaf4Q6PFF0 March11-202ENSMUST00000140840 1558 ntAPPRIS P3 TSL 2 BASIC18.74■□□□□ 0.59
Scaf4Q6PFF0 Gm14486-201ENSMUST00000144704 644 ntTSL 3 BASIC18.74■□□□□ 0.59
Scaf4Q6PFF0 2310061I04Rik-203ENSMUST00000148482 1193 ntTSL 1 (best) BASIC18.74■□□□□ 0.59
Scaf4Q6PFF0 Ly6h-206ENSMUST00000156032 752 ntAPPRIS P3 TSL 3 BASIC18.74■□□□□ 0.59
Scaf4Q6PFF0 Hoxd3os1-204ENSMUST00000156342 796 ntTSL 1 (best) BASIC18.74■□□□□ 0.59
Scaf4Q6PFF0 A730098A19Rik-201ENSMUST00000188193 978 ntTSL 1 (best) BASIC18.74■□□□□ 0.59
Scaf4Q6PFF0 Sec24d-208ENSMUST00000200333 307 ntTSL 1 (best) BASIC18.74■□□□□ 0.59
Scaf4Q6PFF0 Ly6h-201ENSMUST00000023241 906 ntAPPRIS ALT1 TSL 2 BASIC18.74■□□□□ 0.59
Scaf4Q6PFF0 Dolk-201ENSMUST00000100219 2104 ntAPPRIS P1 BASIC18.74■□□□□ 0.59
Scaf4Q6PFF0 Mpg-201ENSMUST00000020528 1737 ntAPPRIS P1 TSL 1 (best) BASIC18.74■□□□□ 0.59
Scaf4Q6PFF0 Foxo3-202ENSMUST00000105501 1316 ntTSL 1 (best) BASIC18.74■□□□□ 0.59
Scaf4Q6PFF0 Impdh2-201ENSMUST00000081111 1858 ntAPPRIS P1 TSL 1 (best) BASIC18.73■□□□□ 0.59
Scaf4Q6PFF0 Lrrc43-201ENSMUST00000094327 2046 ntAPPRIS P3 TSL 1 (best) BASIC18.73■□□□□ 0.59
Scaf4Q6PFF0 Larp1-203ENSMUST00000178636 6617 ntAPPRIS P2 TSL 5 BASIC18.73■□□□□ 0.59
Scaf4Q6PFF0 Mprip-203ENSMUST00000108751 4021 ntAPPRIS ALT2 TSL 1 (best) BASIC18.73■□□□□ 0.59
Scaf4Q6PFF0 Fbxw5-201ENSMUST00000015239 2388 ntAPPRIS P1 TSL 1 (best) BASIC18.73■□□□□ 0.59
Scaf4Q6PFF0 Camk2n2-201ENSMUST00000052939 1291 ntAPPRIS P1 TSL 1 (best) BASIC18.73■□□□□ 0.59
Scaf4Q6PFF0 Gltpd2-201ENSMUST00000057685 1216 ntAPPRIS P2 TSL 1 (best) BASIC18.73■□□□□ 0.59
Scaf4Q6PFF0 Agpat3-201ENSMUST00000001240 5980 ntAPPRIS P1 TSL 1 (best) BASIC18.73■□□□□ 0.59
Scaf4Q6PFF0 Traf3-203ENSMUST00000117269 6972 ntTSL 1 (best) BASIC18.73■□□□□ 0.59
Scaf4Q6PFF0 Gm15853-202ENSMUST00000195518 2041 ntBASIC18.73■□□□□ 0.59
Scaf4Q6PFF0 Pqlc1-207ENSMUST00000140594 2356 ntAPPRIS P3 TSL 1 (best) BASIC18.73■□□□□ 0.59
Scaf4Q6PFF0 Gm26694-201ENSMUST00000180868 1902 ntTSL 1 (best) BASIC18.72■□□□□ 0.59
Scaf4Q6PFF0 Gp5-201ENSMUST00000061190 2196 ntAPPRIS P1 TSL 1 (best) BASIC18.72■□□□□ 0.59
Scaf4Q6PFF0 Trim58-201ENSMUST00000075084 2192 ntAPPRIS P1 TSL 1 (best) BASIC18.72■□□□□ 0.59
Scaf4Q6PFF0 Ica1-203ENSMUST00000115519 1706 ntAPPRIS ALT2 TSL 5 BASIC18.72■□□□□ 0.59
Scaf4Q6PFF0 Syncrip-205ENSMUST00000173801 2944 ntAPPRIS ALT1 TSL 1 (best) BASIC18.72■□□□□ 0.59
Scaf4Q6PFF0 Hotairm1-201ENSMUST00000129546 409 ntTSL 1 (best) BASIC18.72■□□□□ 0.59
Scaf4Q6PFF0 Tor3a-208ENSMUST00000190607 453 ntTSL 3 BASIC18.72■□□□□ 0.59
Scaf4Q6PFF0 Mapkapk3-208ENSMUST00000192054 944 ntTSL 1 (best) BASIC18.72■□□□□ 0.59
Scaf4Q6PFF0 Fkbp1b-201ENSMUST00000020964 976 ntAPPRIS P1 TSL 1 (best) BASIC18.72■□□□□ 0.59
Scaf4Q6PFF0 C1ql4-201ENSMUST00000064462 874 ntAPPRIS P1 TSL 1 (best) BASIC18.72■□□□□ 0.59
Scaf4Q6PFF0 Vat1-201ENSMUST00000040430 2766 ntAPPRIS P1 TSL 1 (best) BASIC18.72■□□□□ 0.59
Scaf4Q6PFF0 Atxn2-201ENSMUST00000051950 4472 ntAPPRIS P1 TSL 1 (best) BASIC18.72■□□□□ 0.59
Scaf4Q6PFF0 Fam129b-201ENSMUST00000028135 3714 ntAPPRIS P1 TSL 1 (best) BASIC18.72■□□□□ 0.59
Scaf4Q6PFF0 Nr4a1-201ENSMUST00000023779 2474 ntAPPRIS P1 TSL 1 (best) BASIC18.72■□□□□ 0.59
Scaf4Q6PFF0 Ddx41-201ENSMUST00000021956 2205 ntAPPRIS P1 TSL 1 (best) BASIC18.72■□□□□ 0.59
Scaf4Q6PFF0 Ppp1r3g-203ENSMUST00000225537 2389 ntAPPRIS P1 BASIC18.71■□□□□ 0.59
Retrieved 100 of 76,532 protein–RNA pairs in 26.8 ms