Protein–RNA interactions for Protein: Q6P8W9

Hmgb4, High mobility group protein B4, mousemouse

Predictions only

Length 181 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Hmgb4Q6P8W9 Dus1l-203ENSMUST00000106135 1863 ntAPPRIS ALT2 TSL 5 BASIC19.91■□□□□ 0.78
Hmgb4Q6P8W9 Sfmbt2-204ENSMUST00000114864 1901 ntTSL 1 (best) BASIC19.91■□□□□ 0.78
Hmgb4Q6P8W9 Pde1b-201ENSMUST00000023132 3218 ntAPPRIS P2 TSL 1 (best) BASIC19.91■□□□□ 0.78
Hmgb4Q6P8W9 Tbc1d25-201ENSMUST00000039892 2648 ntAPPRIS P3 TSL 1 (best) BASIC19.91■□□□□ 0.78
Hmgb4Q6P8W9 Rgs19-202ENSMUST00000108769 1460 ntTSL 2 BASIC19.91■□□□□ 0.78
Hmgb4Q6P8W9 Gm26682-201ENSMUST00000180850 1729 ntTSL 1 (best) BASIC19.9■□□□□ 0.78
Hmgb4Q6P8W9 Mark2-202ENSMUST00000032557 4488 ntAPPRIS ALT2 TSL 1 (best) BASIC19.9■□□□□ 0.78
Hmgb4Q6P8W9 Six3os1-206ENSMUST00000175921 2737 ntTSL 1 (best) BASIC19.9■□□□□ 0.78
Hmgb4Q6P8W9 Sh3bp1-204ENSMUST00000109698 1923 ntTSL 1 (best) BASIC19.9■□□□□ 0.78
Hmgb4Q6P8W9 Snx5-202ENSMUST00000110030 2512 ntAPPRIS P1 TSL 1 (best) BASIC19.9■□□□□ 0.78
Hmgb4Q6P8W9 Gm12669-201ENSMUST00000122162 1009 ntBASIC19.9■□□□□ 0.78
Hmgb4Q6P8W9 Atraid-201ENSMUST00000013766 966 ntAPPRIS P2 TSL 1 (best) BASIC19.9■□□□□ 0.78
Hmgb4Q6P8W9 Sco2-201ENSMUST00000167643 1143 ntAPPRIS P1 TSL 1 (best) BASIC19.9■□□□□ 0.78
Hmgb4Q6P8W9 Prcd-205ENSMUST00000178875 1227 ntTSL 5 BASIC19.9■□□□□ 0.78
Hmgb4Q6P8W9 Gm45894-201ENSMUST00000211940 651 ntTSL 2 BASIC19.9■□□□□ 0.78
Hmgb4Q6P8W9 Gar1-201ENSMUST00000029643 1271 ntAPPRIS P1 TSL 1 (best) BASIC19.9■□□□□ 0.78
Hmgb4Q6P8W9 Rbks-201ENSMUST00000031018 1042 ntAPPRIS P1 TSL 1 (best) BASIC19.9■□□□□ 0.78
Hmgb4Q6P8W9 Snrpc-201ENSMUST00000071006 870 ntAPPRIS P1 TSL 1 (best) BASIC19.9■□□□□ 0.78
Hmgb4Q6P8W9 Shq1-201ENSMUST00000089245 1638 ntTSL 1 (best) BASIC19.9■□□□□ 0.78
Hmgb4Q6P8W9 Olfm2-204ENSMUST00000217198 2005 ntAPPRIS ALT2 TSL 3 BASIC19.9■□□□□ 0.78
Hmgb4Q6P8W9 Baiap2-205ENSMUST00000106233 2442 ntAPPRIS ALT2 TSL 5 BASIC19.9■□□□□ 0.78
Hmgb4Q6P8W9 Tbc1d25-204ENSMUST00000172020 2441 ntAPPRIS ALT2 TSL 1 (best) BASIC19.9■□□□□ 0.78
Hmgb4Q6P8W9 Tmie-201ENSMUST00000050958 2802 ntAPPRIS P1 TSL 1 (best) BASIC19.89■□□□□ 0.78
Hmgb4Q6P8W9 Tmem54-203ENSMUST00000106064 1066 ntAPPRIS P3 TSL 1 (best) BASIC19.89■□□□□ 0.77
Hmgb4Q6P8W9 E130307A14Rik-208ENSMUST00000145971 830 ntTSL 3 BASIC19.89■□□□□ 0.77
Hmgb4Q6P8W9 Rab6b-202ENSMUST00000189134 716 ntTSL 3 BASIC19.89■□□□□ 0.77
Hmgb4Q6P8W9 Cetn3-201ENSMUST00000022009 1226 ntAPPRIS P1 TSL 1 (best) BASIC19.89■□□□□ 0.77
Hmgb4Q6P8W9 Cnih2-201ENSMUST00000025805 1237 ntAPPRIS P1 TSL 1 (best) BASIC19.89■□□□□ 0.77
Hmgb4Q6P8W9 Uqcrc1-201ENSMUST00000026743 1653 ntAPPRIS P1 TSL 1 (best) BASIC19.89■□□□□ 0.77
Hmgb4Q6P8W9 Cldn23-201ENSMUST00000060128 1848 ntAPPRIS P1 BASIC19.89■□□□□ 0.77
Hmgb4Q6P8W9 Abhd8-201ENSMUST00000008094 1978 ntAPPRIS P1 TSL 1 (best) BASIC19.89■□□□□ 0.77
Hmgb4Q6P8W9 Rab7-205ENSMUST00000113600 2159 ntAPPRIS P1 TSL 1 (best) BASIC19.88■□□□□ 0.77
Hmgb4Q6P8W9 Syt5-201ENSMUST00000065957 1750 ntAPPRIS P1 TSL 1 (best) BASIC19.88■□□□□ 0.77
Hmgb4Q6P8W9 Tcp11-203ENSMUST00000114836 1726 ntAPPRIS ALT2 TSL 1 (best) BASIC19.88■□□□□ 0.77
Hmgb4Q6P8W9 Neurog1-201ENSMUST00000058475 1686 ntAPPRIS P1 BASIC19.88■□□□□ 0.77
Hmgb4Q6P8W9 Ly6h-204ENSMUST00000127095 1336 ntAPPRIS P3 TSL 1 (best) BASIC19.88■□□□□ 0.77
Hmgb4Q6P8W9 Gm44732-201ENSMUST00000208055 635 ntTSL 3 BASIC19.88■□□□□ 0.77
Hmgb4Q6P8W9 Map3k21-201ENSMUST00000034316 5693 ntAPPRIS P1 TSL 1 (best) BASIC19.87■□□□□ 0.77
Hmgb4Q6P8W9 Bmp2k-202ENSMUST00000112974 3244 ntTSL 1 (best) BASIC19.87■□□□□ 0.77
Hmgb4Q6P8W9 Aplp1-201ENSMUST00000006828 2343 ntAPPRIS P1 TSL 1 (best) BASIC19.87■□□□□ 0.77
Hmgb4Q6P8W9 Cacnb1-203ENSMUST00000103144 2236 ntTSL 5 BASIC19.87■□□□□ 0.77
Hmgb4Q6P8W9 Bspry-202ENSMUST00000107449 2167 ntAPPRIS ALT2 TSL 1 (best) BASIC19.87■□□□□ 0.77
Hmgb4Q6P8W9 Gm38205-201ENSMUST00000192243 258 ntBASIC19.87■□□□□ 0.77
Hmgb4Q6P8W9 Fam228b-205ENSMUST00000218575 1281 ntAPPRIS ALT2 TSL 2 BASIC19.87■□□□□ 0.77
Hmgb4Q6P8W9 CT030146.1-201ENSMUST00000220919 217 ntBASIC19.87■□□□□ 0.77
Hmgb4Q6P8W9 Nectin1-201ENSMUST00000034510 5653 ntAPPRIS P1 TSL 1 (best) BASIC19.87■□□□□ 0.77
Hmgb4Q6P8W9 Rbm15b-201ENSMUST00000055843 6511 ntAPPRIS P1 BASIC19.87■□□□□ 0.77
Hmgb4Q6P8W9 Rasef-203ENSMUST00000222414 2127 ntAPPRIS P1 TSL 5 BASIC19.87■□□□□ 0.77
Hmgb4Q6P8W9 Matr3-209ENSMUST00000188275 1951 ntTSL 5 BASIC19.86■□□□□ 0.77
Hmgb4Q6P8W9 Cdkn3-203ENSMUST00000227149 1952 ntBASIC19.86■□□□□ 0.77
Hmgb4Q6P8W9 Foxf2-201ENSMUST00000042054 2363 ntAPPRIS P1 TSL 1 (best) BASIC19.86■□□□□ 0.77
Hmgb4Q6P8W9 Lmbr1l-201ENSMUST00000023736 2300 ntAPPRIS P1 TSL 1 (best) BASIC19.86■□□□□ 0.77
Hmgb4Q6P8W9 Rab20-201ENSMUST00000033900 1392 ntAPPRIS P1 TSL 1 (best) BASIC19.86■□□□□ 0.77
Hmgb4Q6P8W9 Adssl1-202ENSMUST00000180015 1819 ntTSL 1 (best) BASIC19.86■□□□□ 0.77
Hmgb4Q6P8W9 Rpusd3-202ENSMUST00000113092 1269 ntAPPRIS P2 TSL 1 (best) BASIC19.86■□□□□ 0.77
Hmgb4Q6P8W9 Lemd3-201ENSMUST00000119093 4370 ntAPPRIS ALT2 TSL 2 BASIC19.86■□□□□ 0.77
Hmgb4Q6P8W9 Epdr1-201ENSMUST00000002885 2363 ntAPPRIS P1 TSL 1 (best) BASIC19.86■□□□□ 0.77
Hmgb4Q6P8W9 Polr2c-201ENSMUST00000109521 1580 ntAPPRIS P1 TSL 1 (best) BASIC19.86■□□□□ 0.77
Hmgb4Q6P8W9 Cstf2-202ENSMUST00000113286 2717 ntTSL 1 (best) BASIC19.86■□□□□ 0.77
Hmgb4Q6P8W9 Il23a-201ENSMUST00000026449 1360 ntAPPRIS P1 TSL 1 (best) BASIC19.85■□□□□ 0.77
Hmgb4Q6P8W9 Mast4-202ENSMUST00000164111 2350 ntTSL 2 BASIC19.85■□□□□ 0.77
Hmgb4Q6P8W9 Zfp444-202ENSMUST00000108565 849 ntTSL 3 BASIC19.85■□□□□ 0.77
Hmgb4Q6P8W9 Sp3os-201ENSMUST00000123087 583 ntTSL 1 (best) BASIC19.85■□□□□ 0.77
Hmgb4Q6P8W9 Matk-205ENSMUST00000121205 1841 ntAPPRIS ALT2 TSL 1 (best) BASIC19.85■□□□□ 0.77
Hmgb4Q6P8W9 Gp1bb-202ENSMUST00000167388 1847 ntAPPRIS ALT2 TSL 2 BASIC19.85■□□□□ 0.77
Hmgb4Q6P8W9 Ak2-202ENSMUST00000102604 1781 ntAPPRIS ALT1 TSL 1 (best) BASIC19.85■□□□□ 0.77
Hmgb4Q6P8W9 Gm11762-201ENSMUST00000135630 1705 ntTSL 1 (best) BASIC19.85■□□□□ 0.77
Hmgb4Q6P8W9 Gm21992-201ENSMUST00000172000 1434 ntAPPRIS P1 TSL 2 BASIC19.85■□□□□ 0.77
Hmgb4Q6P8W9 Gm21992-206ENSMUST00000179909 1435 ntTSL 5 BASIC19.85■□□□□ 0.77
Hmgb4Q6P8W9 Bend7-204ENSMUST00000184139 2251 ntAPPRIS ALT2 TSL 1 (best) BASIC19.85■□□□□ 0.77
Hmgb4Q6P8W9 Sapcd2-203ENSMUST00000114293 1600 ntAPPRIS ALT2 TSL 1 (best) BASIC19.84■□□□□ 0.77
Hmgb4Q6P8W9 Klhl15-205ENSMUST00000113916 2363 ntAPPRIS P1 TSL 1 (best) BASIC19.84■□□□□ 0.77
Hmgb4Q6P8W9 Tal1-204ENSMUST00000162489 2894 ntAPPRIS P1 TSL 1 (best) BASIC19.84■□□□□ 0.77
Hmgb4Q6P8W9 Mir5133-201ENSMUST00000174955 77 ntBASIC19.84■□□□□ 0.77
Hmgb4Q6P8W9 Camkk2-202ENSMUST00000196742 1084 ntTSL 1 (best) BASIC19.84■□□□□ 0.77
Hmgb4Q6P8W9 Gm42555-201ENSMUST00000199304 1039 ntBASIC19.84■□□□□ 0.77
Hmgb4Q6P8W9 Med30-201ENSMUST00000037115 1007 ntAPPRIS P1 TSL 1 (best) BASIC19.84■□□□□ 0.77
Hmgb4Q6P8W9 Noa1-201ENSMUST00000047860 2288 ntAPPRIS P1 TSL 1 (best) BASIC19.84■□□□□ 0.77
Hmgb4Q6P8W9 Pbx1-202ENSMUST00000072863 1709 ntTSL 1 (best) BASIC19.84■□□□□ 0.77
Hmgb4Q6P8W9 Ogfod2-202ENSMUST00000119269 1474 ntTSL 1 (best) BASIC19.84■□□□□ 0.77
Hmgb4Q6P8W9 Hs3st4-201ENSMUST00000106437 3189 ntAPPRIS P1 TSL 3 BASIC19.84■□□□□ 0.77
Hmgb4Q6P8W9 1700008J07Rik-201ENSMUST00000185351 2432 ntBASIC19.84■□□□□ 0.77
Hmgb4Q6P8W9 Dtnb-225ENSMUST00000174663 2381 ntAPPRIS ALT2 TSL 5 BASIC19.84■□□□□ 0.77
Hmgb4Q6P8W9 Jmjd7-201ENSMUST00000044675 1373 ntAPPRIS P1 TSL 1 (best) BASIC19.83■□□□□ 0.77
Hmgb4Q6P8W9 Pias2-202ENSMUST00000114777 4968 ntTSL 1 (best) BASIC19.83■□□□□ 0.77
Hmgb4Q6P8W9 Cd83-201ENSMUST00000015540 2477 ntAPPRIS P1 TSL 1 (best) BASIC19.83■□□□□ 0.77
Hmgb4Q6P8W9 Mark2-206ENSMUST00000164205 3104 ntAPPRIS ALT2 TSL 1 (best) BASIC19.83■□□□□ 0.77
Hmgb4Q6P8W9 A230065N10Rik-201ENSMUST00000172178 1028 ntBASIC19.83■□□□□ 0.77
Hmgb4Q6P8W9 Siglecf-206ENSMUST00000206299 2149 ntAPPRIS ALT2 TSL 1 (best) BASIC19.83■□□□□ 0.77
Hmgb4Q6P8W9 Gm39115-201ENSMUST00000211350 699 ntAPPRIS P1 BASIC19.83■□□□□ 0.77
Hmgb4Q6P8W9 Theg-202ENSMUST00000077433 1275 ntAPPRIS ALT2 TSL 1 (best) BASIC19.83■□□□□ 0.77
Hmgb4Q6P8W9 Znrf1-204ENSMUST00000171182 5466 ntTSL 3 BASIC19.83■□□□□ 0.76
Hmgb4Q6P8W9 AA386476-201ENSMUST00000098781 1665 ntBASIC19.83■□□□□ 0.76
Hmgb4Q6P8W9 Ap1ar-201ENSMUST00000051737 2662 ntAPPRIS P1 TSL 3 BASIC19.83■□□□□ 0.76
Hmgb4Q6P8W9 Gpn2-201ENSMUST00000030661 1367 ntAPPRIS P1 TSL 1 (best) BASIC19.83■□□□□ 0.76
Hmgb4Q6P8W9 Wdr41-202ENSMUST00000159647 2289 ntTSL 5 BASIC19.82■□□□□ 0.76
Hmgb4Q6P8W9 Wdr41-206ENSMUST00000167155 2289 ntTSL 1 (best) BASIC19.82■□□□□ 0.76
Hmgb4Q6P8W9 Tssk6-201ENSMUST00000050373 1335 ntAPPRIS P1 BASIC19.82■□□□□ 0.76
Hmgb4Q6P8W9 Rab1a-203ENSMUST00000109602 2626 ntTSL 5 BASIC19.82■□□□□ 0.76
Hmgb4Q6P8W9 Fxyd1-215ENSMUST00000206474 572 ntAPPRIS P1 TSL 1 (best) BASIC19.82■□□□□ 0.76
Retrieved 100 of 76,532 protein–RNA pairs in 21.5 ms