Protein–RNA interactions for Protein: Q63870

Col7a1, Collagen alpha-1(VII) chain, mousemouse

Predictions only

Length 2,944 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Col7a1Q63870 Banf1-201ENSMUST00000025762 735 ntAPPRIS P1 TSL 1 (best) BASIC16.12■□□□□ 0.17
Col7a1Q63870 Rnf149-201ENSMUST00000062525 2492 ntAPPRIS P1 TSL 1 (best) BASIC16.11■□□□□ 0.17
Col7a1Q63870 Psmg4-201ENSMUST00000124996 474 ntTSL 1 (best) BASIC16.11■□□□□ 0.17
Col7a1Q63870 1810062O18Rik-202ENSMUST00000128848 745 ntTSL 3 BASIC16.11■□□□□ 0.17
Col7a1Q63870 Gm7284-201ENSMUST00000131667 944 ntBASIC16.11■□□□□ 0.17
Col7a1Q63870 Rpl14-201ENSMUST00000165532 1009 ntAPPRIS P1 TSL 1 (best) BASIC16.11■□□□□ 0.17
Col7a1Q63870 Galnt16-204ENSMUST00000218943 2047 ntAPPRIS P1 TSL 1 (best) BASIC16.11■□□□□ 0.17
Col7a1Q63870 H19-202ENSMUST00000136359 2286 ntTSL 1 (best) BASIC16.11■□□□□ 0.17
Col7a1Q63870 Dxo-201ENSMUST00000046244 1519 ntAPPRIS P1 TSL 1 (best) BASIC16.11■□□□□ 0.17
Col7a1Q63870 Grm2-203ENSMUST00000201681 2111 ntTSL 1 (best) BASIC16.11■□□□□ 0.17
Col7a1Q63870 Gm10489-201ENSMUST00000180511 1466 ntTSL 2 BASIC16.11■□□□□ 0.17
Col7a1Q63870 Atp5g1-203ENSMUST00000107686 691 ntAPPRIS P1 TSL 3 BASIC16.11■□□□□ 0.17
Col7a1Q63870 Gm16192-201ENSMUST00000148357 937 ntTSL 1 (best) BASIC16.11■□□□□ 0.17
Col7a1Q63870 Pym1-201ENSMUST00000065210 1156 ntAPPRIS ALT2 TSL 1 (best) BASIC16.11■□□□□ 0.17
Col7a1Q63870 Slc3a2-201ENSMUST00000010239 1819 ntAPPRIS P3 TSL 1 (best) BASIC16.1■□□□□ 0.17
Col7a1Q63870 Psenen-201ENSMUST00000043898 708 ntAPPRIS P1 TSL 1 (best) BASIC16.1■□□□□ 0.17
Col7a1Q63870 Utp11-201ENSMUST00000030738 1603 ntAPPRIS P1 TSL 1 (best) BASIC16.1■□□□□ 0.17
Col7a1Q63870 Rpf2-201ENSMUST00000045114 1853 ntTSL 1 (best) BASIC16.1■□□□□ 0.17
Col7a1Q63870 Ctage5-218ENSMUST00000177162 2728 ntTSL 5 BASIC16.1■□□□□ 0.17
Col7a1Q63870 Hnrnpa3-204ENSMUST00000111964 1654 ntAPPRIS P3 TSL 1 (best) BASIC16.1■□□□□ 0.17
Col7a1Q63870 Gm7102-201ENSMUST00000180168 1624 ntAPPRIS P1 BASIC16.1■□□□□ 0.17
Col7a1Q63870 4930461C15Rik-201ENSMUST00000133622 1302 ntTSL 1 (best) BASIC16.1■□□□□ 0.17
Col7a1Q63870 Dcun1d5-202ENSMUST00000215683 2421 ntAPPRIS P1 TSL 1 (best) BASIC16.1■□□□□ 0.17
Col7a1Q63870 Alkbh2-201ENSMUST00000053657 1073 ntAPPRIS P1 TSL 1 (best) BASIC16.1■□□□□ 0.17
Col7a1Q63870 Peli3-201ENSMUST00000025834 1971 ntAPPRIS P1 TSL 1 (best) BASIC16.1■□□□□ 0.17
Col7a1Q63870 Hhex-201ENSMUST00000025944 1802 ntAPPRIS P1 TSL 1 (best) BASIC16.09■□□□□ 0.17
Col7a1Q63870 Pdlim5-202ENSMUST00000058626 873 ntTSL 5 BASIC16.09■□□□□ 0.17
Col7a1Q63870 Foxn3-209ENSMUST00000177451 2882 ntAPPRIS P1 TSL 1 (best) BASIC16.09■□□□□ 0.17
Col7a1Q63870 Ube2q1-201ENSMUST00000038356 3077 ntAPPRIS P1 TSL 1 (best) BASIC16.09■□□□□ 0.17
Col7a1Q63870 Shc4-202ENSMUST00000110477 1988 ntTSL 1 (best) BASIC16.09■□□□□ 0.17
Col7a1Q63870 Nkx2-2-203ENSMUST00000109970 1053 ntTSL 1 (best) BASIC16.09■□□□□ 0.17
Col7a1Q63870 Gtf3a-204ENSMUST00000146511 1298 ntAPPRIS P5 TSL 1 (best) BASIC16.09■□□□□ 0.17
Col7a1Q63870 Gm43403-201ENSMUST00000198011 1786 ntBASIC16.09■□□□□ 0.17
Col7a1Q63870 Mef2a-203ENSMUST00000076325 2664 ntAPPRIS P1 TSL 1 (best) BASIC16.09■□□□□ 0.17
Col7a1Q63870 Usp2-202ENSMUST00000065461 2057 ntAPPRIS P2 TSL 1 (best) BASIC16.09■□□□□ 0.17
Col7a1Q63870 Grtp1-204ENSMUST00000209691 1030 ntTSL 5 BASIC16.08■□□□□ 0.17
Col7a1Q63870 Chmp2a-203ENSMUST00000210587 930 ntAPPRIS P1 TSL 3 BASIC16.08■□□□□ 0.17
Col7a1Q63870 Samd8-201ENSMUST00000022292 1574 ntAPPRIS P2 TSL 1 (best) BASIC16.08■□□□□ 0.16
Col7a1Q63870 Uchl1-201ENSMUST00000031131 1177 ntAPPRIS P1 TSL 1 (best) BASIC16.08■□□□□ 0.16
Col7a1Q63870 Hpse-202ENSMUST00000112908 1958 ntAPPRIS ALT2 TSL 1 (best) BASIC16.08■□□□□ 0.16
Col7a1Q63870 March9-201ENSMUST00000040307 3037 ntAPPRIS P1 TSL 1 (best) BASIC16.08■□□□□ 0.16
Col7a1Q63870 P4htm-201ENSMUST00000006853 1841 ntAPPRIS P1 TSL 1 (best) BASIC16.08■□□□□ 0.16
Col7a1Q63870 Fez1-201ENSMUST00000034630 1794 ntAPPRIS P1 TSL 1 (best) BASIC16.08■□□□□ 0.16
Col7a1Q63870 Tekt1-203ENSMUST00000108503 1397 ntAPPRIS P1 TSL 1 (best) BASIC16.07■□□□□ 0.16
Col7a1Q63870 Ssr2-207ENSMUST00000195014 1059 ntAPPRIS P1 TSL 1 (best) BASIC16.07■□□□□ 0.16
Col7a1Q63870 Arl2-201ENSMUST00000025893 1144 ntAPPRIS P1 TSL 1 (best) BASIC16.07■□□□□ 0.16
Col7a1Q63870 Bcl3-201ENSMUST00000120537 1850 ntAPPRIS P1 TSL 1 (best) BASIC16.07■□□□□ 0.16
Col7a1Q63870 Zfp467-202ENSMUST00000114556 2287 ntTSL 1 (best) BASIC16.07■□□□□ 0.16
Col7a1Q63870 Nnat-202ENSMUST00000109526 1213 ntAPPRIS P4 TSL 1 (best) BASIC16.07■□□□□ 0.16
Col7a1Q63870 Gm28033-201ENSMUST00000184224 96 ntBASIC16.07■□□□□ 0.16
Col7a1Q63870 Alas2-201ENSMUST00000066337 2037 ntAPPRIS P3 TSL 1 (best) BASIC16.06■□□□□ 0.16
Col7a1Q63870 Sh3gl1-201ENSMUST00000003268 2072 ntAPPRIS P1 TSL 1 (best) BASIC16.06■□□□□ 0.16
Col7a1Q63870 Gm6802-201ENSMUST00000167843 1983 ntBASIC16.06■□□□□ 0.16
Col7a1Q63870 Gm9774-202ENSMUST00000192538 1392 ntAPPRIS P1 BASIC16.06■□□□□ 0.16
Col7a1Q63870 Gm43672-201ENSMUST00000199072 1731 ntBASIC16.06■□□□□ 0.16
Col7a1Q63870 Barhl1-202ENSMUST00000113847 2160 ntAPPRIS P1 TSL 1 (best) BASIC16.06■□□□□ 0.16
Col7a1Q63870 Slc35f4-201ENSMUST00000074368 1931 ntAPPRIS P1 TSL 1 (best) BASIC16.06■□□□□ 0.16
Col7a1Q63870 Ccdc125-202ENSMUST00000170347 1216 ntAPPRIS ALT2 TSL 1 (best) BASIC16.05■□□□□ 0.16
Col7a1Q63870 Il17a-201ENSMUST00000027061 1171 ntAPPRIS P1 TSL 1 (best) BASIC16.05■□□□□ 0.16
Col7a1Q63870 Mmp23-201ENSMUST00000030937 1434 ntAPPRIS P1 TSL 1 (best) BASIC16.05■□□□□ 0.16
Col7a1Q63870 Ankdd1a-201ENSMUST00000061766 1443 ntAPPRIS ALT2 TSL 5 BASIC16.05■□□□□ 0.16
Col7a1Q63870 Ica1-201ENSMUST00000038403 2075 ntAPPRIS P2 TSL 1 (best) BASIC16.05■□□□□ 0.16
Col7a1Q63870 Gm15545-202ENSMUST00000141011 899 ntTSL 3 BASIC16.05■□□□□ 0.16
Col7a1Q63870 Calu-207ENSMUST00000173216 673 ntTSL 5 BASIC16.05■□□□□ 0.16
Col7a1Q63870 Gabarapl1-202ENSMUST00000204487 902 ntTSL 1 (best) BASIC16.05■□□□□ 0.16
Col7a1Q63870 Odf3b-204ENSMUST00000227834 930 ntBASIC16.05■□□□□ 0.16
Col7a1Q63870 Nkx2-6-201ENSMUST00000062437 1134 ntAPPRIS P1 TSL 1 (best) BASIC16.05■□□□□ 0.16
Col7a1Q63870 Nsfl1c-203ENSMUST00000103160 1369 ntTSL 5 BASIC16.05■□□□□ 0.16
Col7a1Q63870 Fdps-203ENSMUST00000196709 1382 ntAPPRIS P1 TSL 5 BASIC16.05■□□□□ 0.16
Col7a1Q63870 Gm7860-201ENSMUST00000121190 879 ntBASIC16.05■□□□□ 0.16
Col7a1Q63870 Hoxa5-201ENSMUST00000048794 1877 ntAPPRIS P1 TSL 1 (best) BASIC16.04■□□□□ 0.16
Col7a1Q63870 Pld6-202ENSMUST00000125307 948 ntAPPRIS P1 TSL 1 (best) BASIC16.04■□□□□ 0.16
Col7a1Q63870 Gm18032-201ENSMUST00000222541 538 ntBASIC16.04■□□□□ 0.16
Col7a1Q63870 Ugp2-201ENSMUST00000060895 2044 ntTSL 1 (best) BASIC16.04■□□□□ 0.16
Col7a1Q63870 Spsb3-202ENSMUST00000068508 2004 ntTSL 1 (best) BASIC16.04■□□□□ 0.16
Col7a1Q63870 Fam181a-201ENSMUST00000179363 1406 ntAPPRIS P1 TSL 2 BASIC16.04■□□□□ 0.16
Col7a1Q63870 Fam181a-203ENSMUST00000191218 1419 ntAPPRIS P1 TSL 5 BASIC16.04■□□□□ 0.16
Col7a1Q63870 Gm7153-201ENSMUST00000117092 455 ntBASIC16.04■□□□□ 0.16
Col7a1Q63870 Asnsd1-202ENSMUST00000123519 983 ntTSL 1 (best) BASIC16.04■□□□□ 0.16
Col7a1Q63870 Nanp-201ENSMUST00000066640 1394 ntAPPRIS P1 TSL 1 (best) BASIC16.03■□□□□ 0.16
Col7a1Q63870 Trip10-207ENSMUST00000224947 2016 ntAPPRIS P2 BASIC16.03■□□□□ 0.16
Col7a1Q63870 Impa1-204ENSMUST00000191670 1100 ntTSL 2 BASIC16.03■□□□□ 0.16
Col7a1Q63870 Prss27-201ENSMUST00000059482 1253 ntAPPRIS P1 TSL 1 (best) BASIC16.03■□□□□ 0.16
Col7a1Q63870 Tpsb2-201ENSMUST00000069616 1081 ntAPPRIS P1 TSL 1 (best) BASIC16.03■□□□□ 0.16
Col7a1Q63870 Ptpn4-203ENSMUST00000163435 2365 ntTSL 1 (best) BASIC16.03■□□□□ 0.16
Col7a1Q63870 Foxp1-225ENSMUST00000177229 1848 ntAPPRIS ALT2 TSL 5 BASIC16.03■□□□□ 0.16
Col7a1Q63870 AC165249.1-201ENSMUST00000220031 1599 ntTSL 1 (best) BASIC16.03■□□□□ 0.16
Col7a1Q63870 Slc9a7-201ENSMUST00000072451 2512 ntAPPRIS P2 TSL 1 (best) BASIC16.02■□□□□ 0.16
Col7a1Q63870 Pigp-202ENSMUST00000113906 745 ntAPPRIS P1 TSL 1 (best) BASIC16.02■□□□□ 0.16
Col7a1Q63870 Hilpda-202ENSMUST00000115289 658 ntAPPRIS P1 TSL 3 BASIC16.02■□□□□ 0.16
Col7a1Q63870 Gm3375-201ENSMUST00000203929 796 ntBASIC16.02■□□□□ 0.16
Col7a1Q63870 Akt1-201ENSMUST00000001780 2690 ntAPPRIS P1 TSL 1 (best) BASIC16.02■□□□□ 0.16
Col7a1Q63870 Ndel1-203ENSMUST00000108672 1653 ntTSL 1 (best) BASIC16.02■□□□□ 0.15
Col7a1Q63870 Gm27032-201ENSMUST00000183124 1116 ntBASIC16.02■□□□□ 0.15
Col7a1Q63870 Gm18959-201ENSMUST00000208954 655 ntBASIC16.02■□□□□ 0.15
Col7a1Q63870 Grrp1-201ENSMUST00000060050 1226 ntAPPRIS P1 TSL 1 (best) BASIC16.02■□□□□ 0.15
Col7a1Q63870 Rplp2-201ENSMUST00000084434 964 ntAPPRIS P1 TSL 1 (best) BASIC16.02■□□□□ 0.15
Col7a1Q63870 Gm36736-201ENSMUST00000206060 646 ntTSL 3 BASIC16.01■□□□□ 0.15
Col7a1Q63870 Gm44973-201ENSMUST00000207050 1003 ntAPPRIS P1 TSL 3 BASIC16.01■□□□□ 0.15
Col7a1Q63870 AC107452.1-201ENSMUST00000227963 481 ntBASIC16.01■□□□□ 0.15
Retrieved 100 of 76,532 protein–RNA pairs in 20.1 ms