Protein–RNA interactions for Protein: Q62226

Shh, Sonic hedgehog protein, mousemouse

Predictions only

Length 437 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
ShhQ62226 Kansl1-205ENSMUST00000106977 5510 ntAPPRIS P2 TSL 1 (best) BASIC17.71■□□□□ 0.43
ShhQ62226 Dtymk-202ENSMUST00000112890 1055 ntTSL 1 (best) BASIC17.71■□□□□ 0.43
ShhQ62226 AI507597-201ENSMUST00000140726 880 ntTSL 1 (best) BASIC17.71■□□□□ 0.43
ShhQ62226 Tnfaip8-208ENSMUST00000148989 1002 ntAPPRIS P1 TSL 2 BASIC17.71■□□□□ 0.43
ShhQ62226 1700003N22Rik-201ENSMUST00000194834 808 ntBASIC17.71■□□□□ 0.43
ShhQ62226 Cstf2-202ENSMUST00000113286 2717 ntTSL 1 (best) BASIC17.71■□□□□ 0.43
ShhQ62226 Fbxo45-201ENSMUST00000042732 4179 ntAPPRIS P1 TSL 1 (best) BASIC17.71■□□□□ 0.43
ShhQ62226 Hnrnph3-202ENSMUST00000118898 2168 ntAPPRIS ALT1 TSL 5 BASIC17.71■□□□□ 0.43
ShhQ62226 Mgat2-201ENSMUST00000060579 2614 ntAPPRIS P1 BASIC17.71■□□□□ 0.43
ShhQ62226 Sapcd2-203ENSMUST00000114293 1600 ntAPPRIS ALT2 TSL 1 (best) BASIC17.71■□□□□ 0.43
ShhQ62226 Nexmif-201ENSMUST00000056502 5211 ntAPPRIS ALT2 TSL 1 (best) BASIC17.71■□□□□ 0.43
ShhQ62226 Astn2-202ENSMUST00000084496 4675 ntAPPRIS ALT2 TSL 5 BASIC17.71■□□□□ 0.43
ShhQ62226 Arhgap27-202ENSMUST00000092557 1504 ntTSL 2 BASIC17.71■□□□□ 0.43
ShhQ62226 Cbx6-203ENSMUST00000109627 5806 ntAPPRIS P2 TSL 1 (best) BASIC17.71■□□□□ 0.43
ShhQ62226 Kcnn4-202ENSMUST00000205428 1945 ntAPPRIS P1 TSL 1 (best) BASIC17.7■□□□□ 0.42
ShhQ62226 Gm20100-201ENSMUST00000209418 2272 ntBASIC17.7■□□□□ 0.42
ShhQ62226 Iqck-206ENSMUST00000208658 2891 ntBASIC17.7■□□□□ 0.42
ShhQ62226 Gm43545-201ENSMUST00000196765 2779 ntBASIC17.7■□□□□ 0.42
ShhQ62226 Glrb-201ENSMUST00000029654 3029 ntAPPRIS P1 TSL 1 (best) BASIC17.7■□□□□ 0.42
ShhQ62226 Polr2j-202ENSMUST00000111127 900 ntTSL 2 BASIC17.7■□□□□ 0.42
ShhQ62226 Nfe2l3-203ENSMUST00000160133 1125 ntTSL 1 (best) BASIC17.7■□□□□ 0.42
ShhQ62226 Gm8520-201ENSMUST00000186517 868 ntBASIC17.7■□□□□ 0.42
ShhQ62226 Mrps33-201ENSMUST00000031978 1107 ntAPPRIS P1 TSL 1 (best) BASIC17.7■□□□□ 0.42
ShhQ62226 Siah1b-201ENSMUST00000037928 1783 ntAPPRIS P1 TSL 1 (best) BASIC17.7■□□□□ 0.42
ShhQ62226 Sirt1-207ENSMUST00000177694 3353 ntTSL 5 BASIC17.7■□□□□ 0.42
ShhQ62226 Rer1-201ENSMUST00000030914 1596 ntAPPRIS P1 TSL 1 (best) BASIC17.7■□□□□ 0.42
ShhQ62226 Kl-201ENSMUST00000078856 5118 ntAPPRIS P1 TSL 1 (best) BASIC17.69■□□□□ 0.42
ShhQ62226 Arfrp1-203ENSMUST00000127988 2447 ntAPPRIS P1 TSL 1 (best) BASIC17.69■□□□□ 0.42
ShhQ62226 Arid1b-201ENSMUST00000092723 7150 ntAPPRIS ALT2 TSL 5 BASIC17.69■□□□□ 0.42
ShhQ62226 Gm15441-202ENSMUST00000107095 1653 ntTSL 1 (best) BASIC17.69■□□□□ 0.42
ShhQ62226 Cetn3-201ENSMUST00000022009 1226 ntAPPRIS P1 TSL 1 (best) BASIC17.69■□□□□ 0.42
ShhQ62226 Psmb5-201ENSMUST00000022803 899 ntAPPRIS P1 TSL 1 (best) BASIC17.69■□□□□ 0.42
ShhQ62226 Vkorc1l1-202ENSMUST00000073945 650 ntTSL 2 BASIC17.69■□□□□ 0.42
ShhQ62226 Magi2-203ENSMUST00000115267 4478 ntTSL 1 (best) BASIC17.69■□□□□ 0.42
ShhQ62226 Clta-202ENSMUST00000107846 1710 ntAPPRIS ALT2 TSL 1 (best) BASIC17.69■□□□□ 0.42
ShhQ62226 Oxsr1-201ENSMUST00000040853 4647 ntAPPRIS P1 TSL 1 (best) BASIC17.69■□□□□ 0.42
ShhQ62226 Hoxa5-201ENSMUST00000048794 1877 ntAPPRIS P1 TSL 1 (best) BASIC17.69■□□□□ 0.42
ShhQ62226 Cox18-202ENSMUST00000118816 1307 ntAPPRIS ALT2 TSL 1 (best) BASIC17.69■□□□□ 0.42
ShhQ62226 Ptar1-201ENSMUST00000099560 2064 ntAPPRIS P1 TSL 5 BASIC17.68■□□□□ 0.42
ShhQ62226 Sec24b-201ENSMUST00000001079 5128 ntAPPRIS P1 TSL 1 (best) BASIC17.68■□□□□ 0.42
ShhQ62226 Adrm1-201ENSMUST00000061437 1535 ntAPPRIS P1 TSL 1 (best) BASIC17.68■□□□□ 0.42
ShhQ62226 Podxl-201ENSMUST00000026698 5379 ntAPPRIS P1 TSL 1 (best) BASIC17.68■□□□□ 0.42
ShhQ62226 Gm13234-201ENSMUST00000120010 747 ntBASIC17.68■□□□□ 0.42
ShhQ62226 Tfam-203ENSMUST00000121685 899 ntAPPRIS ALT2 TSL 2 BASIC17.68■□□□□ 0.42
ShhQ62226 Mir5133-201ENSMUST00000174955 77 ntBASIC17.68■□□□□ 0.42
ShhQ62226 Gm26507-201ENSMUST00000181838 1410 ntTSL 1 (best) BASIC17.68■□□□□ 0.42
ShhQ62226 Meis3-201ENSMUST00000002495 1731 ntAPPRIS P1 TSL 1 (best) BASIC17.68■□□□□ 0.42
ShhQ62226 Prdx5-201ENSMUST00000025904 1262 ntAPPRIS P2 TSL 1 (best) BASIC17.68■□□□□ 0.42
ShhQ62226 Dact3-201ENSMUST00000108493 2989 ntAPPRIS P1 TSL 1 (best) BASIC17.68■□□□□ 0.42
ShhQ62226 Gprc5c-201ENSMUST00000021071 2200 ntAPPRIS P3 TSL 1 (best) BASIC17.68■□□□□ 0.42
ShhQ62226 Eif1-201ENSMUST00000049385 1322 ntAPPRIS P1 TSL 1 (best) BASIC17.68■□□□□ 0.42
ShhQ62226 Tram1-201ENSMUST00000027068 2938 ntAPPRIS P1 TSL 1 (best) BASIC17.68■□□□□ 0.42
ShhQ62226 Cobll1-202ENSMUST00000102726 5031 ntAPPRIS P3 TSL 1 (best) BASIC17.67■□□□□ 0.42
ShhQ62226 Cobll1-203ENSMUST00000112429 5045 ntAPPRIS ALT2 TSL 5 BASIC17.67■□□□□ 0.42
ShhQ62226 Hpca-201ENSMUST00000030572 1525 ntAPPRIS P1 TSL 1 (best) BASIC17.67■□□□□ 0.42
ShhQ62226 Socs2-213ENSMUST00000170690 2195 ntAPPRIS P1 TSL 3 BASIC17.67■□□□□ 0.42
ShhQ62226 Gatad1-201ENSMUST00000007559 2545 ntAPPRIS P2 TSL 1 (best) BASIC17.67■□□□□ 0.42
ShhQ62226 1700023F06Rik-202ENSMUST00000107026 1127 ntAPPRIS ALT2 TSL 1 (best) BASIC17.67■□□□□ 0.42
ShhQ62226 Ankrd9-205ENSMUST00000142012 1226 ntAPPRIS ALT2 TSL 5 BASIC17.67■□□□□ 0.42
ShhQ62226 Gm3807-201ENSMUST00000193520 1168 ntBASIC17.67■□□□□ 0.42
ShhQ62226 Vapa-201ENSMUST00000024897 1640 ntAPPRIS P1 TSL 1 (best) BASIC17.67■□□□□ 0.42
ShhQ62226 Vegfa-207ENSMUST00000142351 1973 ntAPPRIS ALT2 TSL 1 (best) BASIC17.67■□□□□ 0.42
ShhQ62226 Foxj2-201ENSMUST00000003238 5283 ntAPPRIS P1 TSL 1 (best) BASIC17.67■□□□□ 0.42
ShhQ62226 Rnpep-201ENSMUST00000074357 2171 ntTSL 1 (best) BASIC17.67■□□□□ 0.42
ShhQ62226 Gfi1-203ENSMUST00000159164 2648 ntAPPRIS P3 TSL 1 (best) BASIC17.67■□□□□ 0.42
ShhQ62226 Whamm-201ENSMUST00000165460 3069 ntAPPRIS P1 TSL 1 (best) BASIC17.66■□□□□ 0.42
ShhQ62226 Gm16076-201ENSMUST00000140116 480 ntTSL 3 BASIC17.66■□□□□ 0.42
ShhQ62226 Fxyd1-215ENSMUST00000206474 572 ntAPPRIS P1 TSL 1 (best) BASIC17.66■□□□□ 0.42
ShhQ62226 0610010K14Rik-202ENSMUST00000021181 779 ntTSL 1 (best) BASIC17.66■□□□□ 0.42
ShhQ62226 AC137127.1-201ENSMUST00000213466 1078 ntBASIC17.66■□□□□ 0.42
ShhQ62226 AC121965.1-201ENSMUST00000221422 861 ntTSL 1 (best) BASIC17.66■□□□□ 0.42
ShhQ62226 Bola3-207ENSMUST00000136501 2312 ntAPPRIS P1 TSL 1 (best) BASIC17.66■□□□□ 0.42
ShhQ62226 Gm26837-201ENSMUST00000180821 2110 ntTSL 5 BASIC17.66■□□□□ 0.42
ShhQ62226 Ddost-201ENSMUST00000030538 2120 ntAPPRIS P1 TSL 1 (best) BASIC17.66■□□□□ 0.42
ShhQ62226 C1qtnf12-201ENSMUST00000024338 1315 ntAPPRIS P1 TSL 1 (best) BASIC17.66■□□□□ 0.42
ShhQ62226 Lrrc36-204ENSMUST00000213547 2396 ntAPPRIS ALT2 TSL 5 BASIC17.66■□□□□ 0.42
ShhQ62226 Slc35d3-201ENSMUST00000059805 2630 ntAPPRIS P1 TSL 1 (best) BASIC17.66■□□□□ 0.42
ShhQ62226 Zfyve9-202ENSMUST00000106657 6459 ntAPPRIS P2 TSL 5 BASIC17.65■□□□□ 0.42
ShhQ62226 Tmem222-201ENSMUST00000105907 1484 ntAPPRIS P1 TSL 1 (best) BASIC17.65■□□□□ 0.42
ShhQ62226 Rnaseh2b-201ENSMUST00000022499 1494 ntAPPRIS P1 TSL 1 (best) BASIC17.65■□□□□ 0.42
ShhQ62226 Nsfl1c-202ENSMUST00000089140 1486 ntAPPRIS P3 TSL 5 BASIC17.65■□□□□ 0.42
ShhQ62226 Pdpk1-205ENSMUST00000115411 1724 ntTSL 1 (best) BASIC17.65■□□□□ 0.42
ShhQ62226 C1qtnf5-202ENSMUST00000114816 1259 ntAPPRIS P1 TSL 1 (best) BASIC17.65■□□□□ 0.42
ShhQ62226 AC175538.2-202ENSMUST00000224997 1057 ntAPPRIS P1 BASIC17.65■□□□□ 0.42
ShhQ62226 Baz1a-201ENSMUST00000038926 6188 ntAPPRIS ALT2 TSL 5 BASIC17.65■□□□□ 0.42
ShhQ62226 Metrn-202ENSMUST00000165838 1363 ntAPPRIS P1 TSL 1 (best) BASIC17.65■□□□□ 0.42
ShhQ62226 Galnt3-201ENSMUST00000028378 3885 ntAPPRIS P1 TSL 1 (best) BASIC17.65■□□□□ 0.42
ShhQ62226 Sost-201ENSMUST00000001534 2066 ntAPPRIS P1 TSL 1 (best) BASIC17.64■□□□□ 0.41
ShhQ62226 Ern1-203ENSMUST00000106800 654 ntTSL 3 BASIC17.64■□□□□ 0.41
ShhQ62226 Gm7514-201ENSMUST00000209475 934 ntBASIC17.64■□□□□ 0.41
ShhQ62226 Gm11175-202ENSMUST00000211380 408 ntTSL 3 BASIC17.64■□□□□ 0.41
ShhQ62226 Cck-204ENSMUST00000216138 799 ntTSL 1 (best) BASIC17.64■□□□□ 0.41
ShhQ62226 Myl6-206ENSMUST00000218127 691 ntAPPRIS ALT1 TSL 2 BASIC17.64■□□□□ 0.41
ShhQ62226 AC158538.1-201ENSMUST00000225870 294 ntBASIC17.64■□□□□ 0.41
ShhQ62226 Sdf2l1-201ENSMUST00000023453 1108 ntAPPRIS P1 TSL 1 (best) BASIC17.64■□□□□ 0.41
ShhQ62226 Gpn2-201ENSMUST00000030661 1367 ntAPPRIS P1 TSL 1 (best) BASIC17.64■□□□□ 0.41
ShhQ62226 Cyp4f15-201ENSMUST00000008801 2095 ntAPPRIS ALT2 TSL 1 (best) BASIC17.63■□□□□ 0.41
ShhQ62226 Fmnl2-201ENSMUST00000049483 5461 ntTSL 5 BASIC17.63■□□□□ 0.41
ShhQ62226 Ankrd9-203ENSMUST00000135131 1563 ntAPPRIS P2 TSL 1 (best) BASIC17.63■□□□□ 0.41
ShhQ62226 Fpgs-201ENSMUST00000028148 2273 ntAPPRIS P1 TSL 1 (best) BASIC17.63■□□□□ 0.41
Retrieved 100 of 76,532 protein–RNA pairs in 23.6 ms