Protein–RNA interactions for Protein: Q60649

Clpb, Caseinolytic peptidase B protein homolog, mousemouse

Predictions only

Length 677 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
ClpbQ60649 Sco1-202ENSMUST00000108690 2186 ntAPPRIS ALT2 TSL 1 (best) BASIC18.22■□□□□ 0.51
ClpbQ60649 Sept7-201ENSMUST00000115272 2533 ntAPPRIS ALT1 TSL 5 BASIC18.22■□□□□ 0.51
ClpbQ60649 Smox-202ENSMUST00000110179 1320 ntTSL 1 (best) BASIC18.22■□□□□ 0.51
ClpbQ60649 Mcub-201ENSMUST00000029624 1318 ntAPPRIS P1 TSL 1 (best) BASIC18.22■□□□□ 0.51
ClpbQ60649 Hopxos-201ENSMUST00000148568 1661 ntTSL 1 (best) BASIC18.22■□□□□ 0.51
ClpbQ60649 Cd24a-201ENSMUST00000058714 1816 ntAPPRIS P2 TSL 1 (best) BASIC18.21■□□□□ 0.51
ClpbQ60649 Fzd8-201ENSMUST00000041080 3346 ntAPPRIS P1 BASIC18.21■□□□□ 0.51
ClpbQ60649 Gm12660-201ENSMUST00000123764 664 ntTSL 3 BASIC18.21■□□□□ 0.51
ClpbQ60649 Chrac1-202ENSMUST00000134353 538 ntAPPRIS ALT2 TSL 2 BASIC18.21■□□□□ 0.51
ClpbQ60649 Gm20421-201ENSMUST00000153344 672 ntTSL 3 BASIC18.21■□□□□ 0.51
ClpbQ60649 Tmbim4-201ENSMUST00000020446 904 ntAPPRIS P1 TSL 1 (best) BASIC18.21■□□□□ 0.51
ClpbQ60649 Hdgfl3-202ENSMUST00000107305 5887 ntAPPRIS P2 TSL 1 (best) BASIC18.21■□□□□ 0.51
ClpbQ60649 Gm3667-201ENSMUST00000171906 2053 ntAPPRIS P1 TSL 5 BASIC18.21■□□□□ 0.51
ClpbQ60649 Hpca-204ENSMUST00000116444 1847 ntAPPRIS P1 TSL 5 BASIC18.21■□□□□ 0.51
ClpbQ60649 Gm10129-202ENSMUST00000193100 1316 ntBASIC18.21■□□□□ 0.51
ClpbQ60649 Dhps-201ENSMUST00000078665 1333 ntAPPRIS P1 TSL 1 (best) BASIC18.21■□□□□ 0.51
ClpbQ60649 Actrt3-201ENSMUST00000047630 1961 ntAPPRIS P1 TSL 1 (best) BASIC18.21■□□□□ 0.5
ClpbQ60649 Ndufaf1-202ENSMUST00000110801 1478 ntAPPRIS ALT2 TSL 1 (best) BASIC18.2■□□□□ 0.5
ClpbQ60649 Srsf4-202ENSMUST00000053819 2257 ntAPPRIS P1 TSL 1 (best) BASIC18.2■□□□□ 0.5
ClpbQ60649 Gxylt1-201ENSMUST00000049484 6611 ntAPPRIS P3 TSL 1 (best) BASIC18.2■□□□□ 0.5
ClpbQ60649 Polr1d-202ENSMUST00000110557 1137 ntTSL 1 (best) BASIC18.2■□□□□ 0.5
ClpbQ60649 Jtb-202ENSMUST00000119304 878 ntTSL 3 BASIC18.2■□□□□ 0.5
ClpbQ60649 Plac9b-203ENSMUST00000184142 1040 ntAPPRIS P1 TSL 1 (best) BASIC18.2■□□□□ 0.5
ClpbQ60649 Hgfac-206ENSMUST00000202573 434 ntTSL 5 BASIC18.2■□□□□ 0.5
ClpbQ60649 Meis3-205ENSMUST00000176506 1839 ntTSL 1 (best) BASIC18.2■□□□□ 0.5
ClpbQ60649 Tnpo2-207ENSMUST00000211601 2941 ntTSL 1 (best) BASIC18.2■□□□□ 0.5
ClpbQ60649 Fmnl2-204ENSMUST00000127122 5508 ntTSL 5 BASIC18.2■□□□□ 0.5
ClpbQ60649 Gnb5-206ENSMUST00000215875 2105 ntAPPRIS P1 TSL 1 (best) BASIC18.2■□□□□ 0.5
ClpbQ60649 Rbm15b-201ENSMUST00000055843 6511 ntAPPRIS P1 BASIC18.2■□□□□ 0.5
ClpbQ60649 AW047730-202ENSMUST00000181406 2579 ntTSL 1 (best) BASIC18.2■□□□□ 0.5
ClpbQ60649 Mprip-201ENSMUST00000066330 7765 ntAPPRIS ALT2 TSL 5 BASIC18.2■□□□□ 0.5
ClpbQ60649 Gas2-203ENSMUST00000107591 2232 ntAPPRIS P1 TSL 1 (best) BASIC18.19■□□□□ 0.5
ClpbQ60649 Mms22l-205ENSMUST00000138567 1350 ntTSL 2 BASIC18.19■□□□□ 0.5
ClpbQ60649 Golph3-205ENSMUST00000228671 2842 ntBASIC18.19■□□□□ 0.5
ClpbQ60649 Donson-202ENSMUST00000114031 2147 ntAPPRIS ALT2 TSL 5 BASIC18.19■□□□□ 0.5
ClpbQ60649 Wnk2-204ENSMUST00000110096 6534 ntAPPRIS ALT2 TSL 5 BASIC18.19■□□□□ 0.5
ClpbQ60649 Rfc5-202ENSMUST00000111953 772 ntTSL 1 (best) BASIC18.19■□□□□ 0.5
ClpbQ60649 Paics-203ENSMUST00000120912 2345 ntAPPRIS P1 TSL 1 (best) BASIC18.19■□□□□ 0.5
ClpbQ60649 Mrpl3-205ENSMUST00000149243 2309 ntTSL 1 (best) BASIC18.19■□□□□ 0.5
ClpbQ60649 Gm27801-201ENSMUST00000184174 223 ntBASIC18.19■□□□□ 0.5
ClpbQ60649 Gm45640-201ENSMUST00000210665 1896 ntBASIC18.19■□□□□ 0.5
ClpbQ60649 Slc35b2-207ENSMUST00000226086 850 ntBASIC18.19■□□□□ 0.5
ClpbQ60649 Prss16-201ENSMUST00000006341 2155 ntAPPRIS P1 TSL 1 (best) BASIC18.19■□□□□ 0.5
ClpbQ60649 Hgsnat-201ENSMUST00000037609 2694 ntAPPRIS P1 TSL 1 (best) BASIC18.19■□□□□ 0.5
ClpbQ60649 Sra1-201ENSMUST00000001415 2061 ntAPPRIS P4 TSL 5 BASIC18.19■□□□□ 0.5
ClpbQ60649 Alg9-201ENSMUST00000034561 2873 ntAPPRIS P1 TSL 1 (best) BASIC18.19■□□□□ 0.5
ClpbQ60649 Csnk1a1-210ENSMUST00000170862 2259 ntAPPRIS ALT1 TSL 5 BASIC18.19■□□□□ 0.5
ClpbQ60649 Eml4-203ENSMUST00000112363 5238 ntAPPRIS ALT2 TSL 1 (best) BASIC18.18■□□□□ 0.5
ClpbQ60649 Tmem179-201ENSMUST00000066791 2380 ntAPPRIS P1 TSL 1 (best) BASIC18.18■□□□□ 0.5
ClpbQ60649 Maml1-201ENSMUST00000059458 5528 ntAPPRIS P1 TSL 1 (best) BASIC18.18■□□□□ 0.5
ClpbQ60649 Sbspon-201ENSMUST00000040695 2748 ntAPPRIS P1 TSL 1 (best) BASIC18.18■□□□□ 0.5
ClpbQ60649 Rhbdf1-201ENSMUST00000020524 2946 ntAPPRIS P1 TSL 1 (best) BASIC18.18■□□□□ 0.5
ClpbQ60649 Grtp1-207ENSMUST00000211128 1416 ntTSL 1 (best) BASIC18.18■□□□□ 0.5
ClpbQ60649 Xylt1-201ENSMUST00000032892 9020 ntAPPRIS P1 TSL 1 (best) BASIC18.18■□□□□ 0.5
ClpbQ60649 Trim72-202ENSMUST00000106248 2134 ntAPPRIS P1 TSL 5 BASIC18.18■□□□□ 0.5
ClpbQ60649 Gm13067-201ENSMUST00000134236 404 ntTSL 5 BASIC18.18■□□□□ 0.5
ClpbQ60649 Gas5-217ENSMUST00000161005 430 ntTSL 5 BASIC18.18■□□□□ 0.5
ClpbQ60649 1700012B09Rik-204ENSMUST00000191047 654 ntAPPRIS ALT2 TSL 3 BASIC18.18■□□□□ 0.5
ClpbQ60649 Sdf2l1-201ENSMUST00000023453 1108 ntAPPRIS P1 TSL 1 (best) BASIC18.18■□□□□ 0.5
ClpbQ60649 Foxa2-201ENSMUST00000047315 2128 ntAPPRIS P3 TSL 1 (best) BASIC18.18■□□□□ 0.5
ClpbQ60649 Plekhh1-201ENSMUST00000039928 6439 ntAPPRIS P1 TSL 1 (best) BASIC18.18■□□□□ 0.5
ClpbQ60649 Nectin3-201ENSMUST00000023334 3062 ntAPPRIS P4 TSL 1 (best) BASIC18.18■□□□□ 0.5
ClpbQ60649 Mall-201ENSMUST00000028856 2006 ntAPPRIS P1 TSL 1 (best) BASIC18.18■□□□□ 0.5
ClpbQ60649 Cox18-202ENSMUST00000118816 1307 ntAPPRIS ALT2 TSL 1 (best) BASIC18.18■□□□□ 0.5
ClpbQ60649 Ddah2-201ENSMUST00000007255 1342 ntAPPRIS P1 TSL 1 (best) BASIC18.18■□□□□ 0.5
ClpbQ60649 Upf1-201ENSMUST00000075666 4618 ntAPPRIS P2 TSL 1 (best) BASIC18.18■□□□□ 0.5
ClpbQ60649 Rapgef1-203ENSMUST00000102872 6402 ntAPPRIS P3 TSL 1 (best) BASIC18.17■□□□□ 0.5
ClpbQ60649 Eif4h-205ENSMUST00000202622 2726 ntAPPRIS P3 TSL 1 (best) BASIC18.17■□□□□ 0.5
ClpbQ60649 Acot2-201ENSMUST00000021649 2196 ntAPPRIS P1 TSL 1 (best) BASIC18.17■□□□□ 0.5
ClpbQ60649 Relb-202ENSMUST00000094762 2209 ntAPPRIS P3 TSL 1 (best) BASIC18.17■□□□□ 0.5
ClpbQ60649 Relb-203ENSMUST00000098754 2203 ntAPPRIS ALT2 TSL 5 BASIC18.17■□□□□ 0.5
ClpbQ60649 Fblim1-202ENSMUST00000105784 3036 ntAPPRIS P1 TSL 5 BASIC18.17■□□□□ 0.5
ClpbQ60649 Wnt16-203ENSMUST00000148639 1168 ntTSL 1 (best) BASIC18.17■□□□□ 0.5
ClpbQ60649 0610010K14Rik-202ENSMUST00000021181 779 ntTSL 1 (best) BASIC18.17■□□□□ 0.5
ClpbQ60649 AC154266.1-201ENSMUST00000223190 503 ntBASIC18.17■□□□□ 0.5
ClpbQ60649 Gm13830-204ENSMUST00000149609 1851 ntTSL 1 (best) BASIC18.17■□□□□ 0.5
ClpbQ60649 Nlgn2-201ENSMUST00000056484 5003 ntAPPRIS P1 TSL 1 (best) BASIC18.17■□□□□ 0.5
ClpbQ60649 Fam105a-202ENSMUST00000226145 2950 ntAPPRIS P1 BASIC18.17■□□□□ 0.5
ClpbQ60649 Exoc5-206ENSMUST00000161504 2582 ntTSL 5 BASIC18.17■□□□□ 0.5
ClpbQ60649 Wipi2-202ENSMUST00000110778 1959 ntAPPRIS P1 TSL 5 BASIC18.17■□□□□ 0.5
ClpbQ60649 5033417F24Rik-201ENSMUST00000181575 1787 ntTSL 1 (best) BASIC18.17■□□□□ 0.5
ClpbQ60649 Rcor3-203ENSMUST00000192128 1578 ntAPPRIS P3 TSL 1 (best) BASIC18.17■□□□□ 0.5
ClpbQ60649 Plin1-202ENSMUST00000178257 1841 ntAPPRIS P1 TSL 1 (best) BASIC18.16■□□□□ 0.5
ClpbQ60649 Vapa-201ENSMUST00000024897 1640 ntAPPRIS P1 TSL 1 (best) BASIC18.16■□□□□ 0.5
ClpbQ60649 Gnpda1-201ENSMUST00000063814 2289 ntAPPRIS P1 TSL 1 (best) BASIC18.16■□□□□ 0.5
ClpbQ60649 Hyal2-207ENSMUST00000195752 2062 ntAPPRIS P2 TSL 5 BASIC18.16■□□□□ 0.5
ClpbQ60649 Fkbp1a-201ENSMUST00000044011 1658 ntAPPRIS P1 TSL 1 (best) BASIC18.16■□□□□ 0.5
ClpbQ60649 Kcnq2-203ENSMUST00000081528 2382 ntTSL 1 (best) BASIC18.16■□□□□ 0.5
ClpbQ60649 Ppp1r21-201ENSMUST00000038551 3141 ntAPPRIS P1 TSL 1 (best) BASIC18.16■□□□□ 0.5
ClpbQ60649 Gm10153-201ENSMUST00000084415 522 ntTSL 5 BASIC18.16■□□□□ 0.5
ClpbQ60649 Stoml1-201ENSMUST00000034883 1984 ntAPPRIS P1 TSL 1 (best) BASIC18.16■□□□□ 0.5
ClpbQ60649 0610038B21Rik-202ENSMUST00000184762 1524 ntBASIC18.16■□□□□ 0.5
ClpbQ60649 Hoxb3os-201ENSMUST00000131275 2315 ntTSL 3 BASIC18.16■□□□□ 0.5
ClpbQ60649 Bnc2-214ENSMUST00000176612 3963 ntTSL 5 BASIC18.15■□□□□ 0.5
ClpbQ60649 6820408C15Rik-201ENSMUST00000039961 1684 ntAPPRIS P1 TSL 1 (best) BASIC18.15■□□□□ 0.5
ClpbQ60649 Kis2-201ENSMUST00000133214 1717 ntTSL 1 (best) BASIC18.15■□□□□ 0.5
ClpbQ60649 Trim72-201ENSMUST00000081042 1755 ntAPPRIS P1 TSL 1 (best) BASIC18.15■□□□□ 0.5
ClpbQ60649 Gm42778-201ENSMUST00000199644 553 ntBASIC18.15■□□□□ 0.5
ClpbQ60649 Gm42642-201ENSMUST00000200683 355 ntBASIC18.15■□□□□ 0.5
ClpbQ60649 Mrpl40-201ENSMUST00000023391 1185 ntAPPRIS P1 TSL 1 (best) BASIC18.15■□□□□ 0.5
Retrieved 100 of 76,532 protein–RNA pairs in 245.5 ms