Protein–RNA interactions for Protein: Q5R1E6

Trav6-3, T cell receptor alpha variable 6-3 (Fragment), mousemouse

Predictions only

Length 112 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Trav6-3Q5R1E6 Dnpep-204ENSMUST00000185797 2510 ntAPPRIS ALT2 TSL 1 (best) BASIC15.28■□□□□ 0.04
Trav6-3Q5R1E6 Zfp579-206ENSMUST00000162731 2489 ntAPPRIS P1 BASIC15.28■□□□□ 0.04
Trav6-3Q5R1E6 Lrrc36-202ENSMUST00000109355 2411 ntAPPRIS P2 TSL 5 BASIC15.28■□□□□ 0.04
Trav6-3Q5R1E6 Zmynd10-201ENSMUST00000010188 1765 ntAPPRIS P1 TSL 1 (best) BASIC15.28■□□□□ 0.04
Trav6-3Q5R1E6 Etnk1-203ENSMUST00000204947 1791 ntTSL 1 (best) BASIC15.28■□□□□ 0.04
Trav6-3Q5R1E6 Phf23-204ENSMUST00000133485 1607 ntTSL 5 BASIC15.28■□□□□ 0.04
Trav6-3Q5R1E6 Syt7-203ENSMUST00000169121 6834 ntTSL 5 BASIC15.28■□□□□ 0.04
Trav6-3Q5R1E6 Trib3-201ENSMUST00000040312 2026 ntAPPRIS P1 TSL 1 (best) BASIC15.27■□□□□ 0.04
Trav6-3Q5R1E6 Zfp706-201ENSMUST00000078976 4417 ntAPPRIS P1 TSL 1 (best) BASIC15.27■□□□□ 0.04
Trav6-3Q5R1E6 Tmem44-204ENSMUST00000140402 2405 ntAPPRIS P1 TSL 1 (best) BASIC15.27■□□□□ 0.04
Trav6-3Q5R1E6 Agmat-201ENSMUST00000038161 1407 ntAPPRIS P1 TSL 1 (best) BASIC15.27■□□□□ 0.04
Trav6-3Q5R1E6 Erlin1-202ENSMUST00000112028 3136 ntAPPRIS P1 TSL 1 (best) BASIC15.27■□□□□ 0.04
Trav6-3Q5R1E6 4930539J05Rik-202ENSMUST00000182865 511 ntTSL 2 BASIC15.27■□□□□ 0.04
Trav6-3Q5R1E6 0610039K10Rik-202ENSMUST00000184724 952 ntBASIC15.27■□□□□ 0.04
Trav6-3Q5R1E6 Rps7-203ENSMUST00000221871 820 ntAPPRIS P1 TSL 1 (best) BASIC15.27■□□□□ 0.04
Trav6-3Q5R1E6 Gm4737-201ENSMUST00000059524 2093 ntAPPRIS P1 BASIC15.27■□□□□ 0.03
Trav6-3Q5R1E6 Ankrd17-214ENSMUST00000218526 4938 ntTSL 5 BASIC15.27■□□□□ 0.03
Trav6-3Q5R1E6 Papola-212ENSMUST00000168186 2436 ntTSL 1 (best) BASIC15.27■□□□□ 0.03
Trav6-3Q5R1E6 Zfp385b-204ENSMUST00000111831 2734 ntAPPRIS P3 TSL 1 (best) BASIC15.27■□□□□ 0.03
Trav6-3Q5R1E6 Hoxd4-202ENSMUST00000111980 1494 ntAPPRIS P1 TSL 1 (best) BASIC15.27■□□□□ 0.03
Trav6-3Q5R1E6 Coq9-201ENSMUST00000034234 1789 ntAPPRIS P1 TSL 1 (best) BASIC15.26■□□□□ 0.03
Trav6-3Q5R1E6 Crhr1-201ENSMUST00000093925 2460 ntAPPRIS P1 TSL 1 (best) BASIC15.26■□□□□ 0.03
Trav6-3Q5R1E6 Lrch3-201ENSMUST00000023491 5536 ntAPPRIS P3 TSL 1 (best) BASIC15.26■□□□□ 0.03
Trav6-3Q5R1E6 Sh2b3-203ENSMUST00000118580 2393 ntAPPRIS ALT2 TSL 2 BASIC15.26■□□□□ 0.03
Trav6-3Q5R1E6 Cxadr-201ENSMUST00000023572 5734 ntAPPRIS P3 TSL 1 (best) BASIC15.26■□□□□ 0.03
Trav6-3Q5R1E6 Jagn1-201ENSMUST00000101070 1201 ntAPPRIS P1 TSL 1 (best) BASIC15.26■□□□□ 0.03
Trav6-3Q5R1E6 Ankra2-205ENSMUST00000150916 1028 ntTSL 1 (best) BASIC15.26■□□□□ 0.03
Trav6-3Q5R1E6 Arpp19-206ENSMUST00000168301 599 ntTSL 5 BASIC15.26■□□□□ 0.03
Trav6-3Q5R1E6 Gm43137-201ENSMUST00000198052 594 ntBASIC15.26■□□□□ 0.03
Trav6-3Q5R1E6 AC138214.1-201ENSMUST00000223838 420 ntAPPRIS P1 BASIC15.26■□□□□ 0.03
Trav6-3Q5R1E6 Fbxo2-201ENSMUST00000047951 1288 ntAPPRIS P1 TSL 1 (best) BASIC15.26■□□□□ 0.03
Trav6-3Q5R1E6 Gm9885-202ENSMUST00000186234 2209 ntBASIC15.26■□□□□ 0.03
Trav6-3Q5R1E6 Nbn-201ENSMUST00000029879 2533 ntAPPRIS P1 TSL 1 (best) BASIC15.26■□□□□ 0.03
Trav6-3Q5R1E6 Cldn23-201ENSMUST00000060128 1848 ntAPPRIS P1 BASIC15.26■□□□□ 0.03
Trav6-3Q5R1E6 6030419C18Rik-201ENSMUST00000085658 2139 ntAPPRIS P1 TSL 1 (best) BASIC15.26■□□□□ 0.03
Trav6-3Q5R1E6 Krtap5-2-202ENSMUST00000190456 1471 ntAPPRIS P2 BASIC15.26■□□□□ 0.03
Trav6-3Q5R1E6 Map6-202ENSMUST00000107100 2335 ntAPPRIS ALT2 TSL 1 (best) BASIC15.26■□□□□ 0.03
Trav6-3Q5R1E6 3010003L21Rik-201ENSMUST00000047953 1729 ntTSL 5 BASIC15.26■□□□□ 0.03
Trav6-3Q5R1E6 Rpap3-201ENSMUST00000023104 2260 ntAPPRIS P1 TSL 1 (best) BASIC15.26■□□□□ 0.03
Trav6-3Q5R1E6 Gsx2-201ENSMUST00000040477 1665 ntAPPRIS P1 TSL 1 (best) BASIC15.25■□□□□ 0.03
Trav6-3Q5R1E6 Qpct-201ENSMUST00000040789 1924 ntAPPRIS P1 TSL 1 (best) BASIC15.25■□□□□ 0.03
Trav6-3Q5R1E6 Gm21964-202ENSMUST00000213641 1649 ntAPPRIS ALT2 TSL 5 BASIC15.25■□□□□ 0.03
Trav6-3Q5R1E6 Impdh2-201ENSMUST00000081111 1858 ntAPPRIS P1 TSL 1 (best) BASIC15.25■□□□□ 0.03
Trav6-3Q5R1E6 Metap1-201ENSMUST00000029804 2686 ntAPPRIS P1 TSL 1 (best) BASIC15.25■□□□□ 0.03
Trav6-3Q5R1E6 Arhgap23-203ENSMUST00000121799 5816 ntAPPRIS P1 TSL 5 BASIC15.25■□□□□ 0.03
Trav6-3Q5R1E6 Ntn5-201ENSMUST00000107742 1574 ntTSL 1 (best) BASIC15.25■□□□□ 0.03
Trav6-3Q5R1E6 Gm28523-201ENSMUST00000190040 1588 ntTSL 1 (best) BASIC15.25■□□□□ 0.03
Trav6-3Q5R1E6 Zdhhc14-201ENSMUST00000089185 3115 ntAPPRIS P1 TSL 1 (best) BASIC15.25■□□□□ 0.03
Trav6-3Q5R1E6 Arid1b-201ENSMUST00000092723 7150 ntAPPRIS ALT2 TSL 5 BASIC15.25■□□□□ 0.03
Trav6-3Q5R1E6 Pigp-204ENSMUST00000113914 912 ntTSL 1 (best) BASIC15.25■□□□□ 0.03
Trav6-3Q5R1E6 2810001G20Rik-202ENSMUST00000146333 959 ntTSL 3 BASIC15.25■□□□□ 0.03
Trav6-3Q5R1E6 AC158777.2-201ENSMUST00000228787 398 ntAPPRIS P1 BASIC15.25■□□□□ 0.03
Trav6-3Q5R1E6 Dlg3-204ENSMUST00000113736 4940 ntTSL 1 (best) BASIC15.25■□□□□ 0.03
Trav6-3Q5R1E6 Rab3ip-201ENSMUST00000020375 2690 ntTSL 1 (best) BASIC15.25■□□□□ 0.03
Trav6-3Q5R1E6 Mchr1-201ENSMUST00000166855 2188 ntAPPRIS P1 TSL 1 (best) BASIC15.25■□□□□ 0.03
Trav6-3Q5R1E6 Rbm15b-201ENSMUST00000055843 6511 ntAPPRIS P1 BASIC15.25■□□□□ 0.03
Trav6-3Q5R1E6 Srcin1-201ENSMUST00000107590 5493 ntAPPRIS ALT2 TSL 5 BASIC15.25■□□□□ 0.03
Trav6-3Q5R1E6 Ltb4r2-201ENSMUST00000044554 1439 ntAPPRIS P1 TSL 1 (best) BASIC15.25■□□□□ 0.03
Trav6-3Q5R1E6 Lrrfip1-201ENSMUST00000068116 2050 ntAPPRIS ALT2 TSL 5 BASIC15.24■□□□□ 0.03
Trav6-3Q5R1E6 Bag1-202ENSMUST00000108089 1336 ntAPPRIS ALT2 TSL 1 (best) BASIC15.24■□□□□ 0.03
Trav6-3Q5R1E6 2310035C23Rik-202ENSMUST00000086721 5414 ntAPPRIS ALT2 TSL 5 BASIC15.24■□□□□ 0.03
Trav6-3Q5R1E6 Nkiras2-203ENSMUST00000107376 1727 ntAPPRIS P1 TSL 5 BASIC15.24■□□□□ 0.03
Trav6-3Q5R1E6 Tuba1b-201ENSMUST00000077577 1743 ntAPPRIS P1 TSL 1 (best) BASIC15.24■□□□□ 0.03
Trav6-3Q5R1E6 Bmpr1b-203ENSMUST00000106230 2147 ntAPPRIS P1 TSL 1 (best) BASIC15.24■□□□□ 0.03
Trav6-3Q5R1E6 Cdv3-ps-201ENSMUST00000169632 827 ntBASIC15.24■□□□□ 0.03
Trav6-3Q5R1E6 Tmem196-202ENSMUST00000183694 845 ntTSL 3 BASIC15.24■□□□□ 0.03
Trav6-3Q5R1E6 Svbp-201ENSMUST00000030395 733 ntAPPRIS P1 TSL 1 (best) BASIC15.24■□□□□ 0.03
Trav6-3Q5R1E6 2810025M15Rik-201ENSMUST00000061537 1194 ntTSL 1 (best) BASIC15.24■□□□□ 0.03
Trav6-3Q5R1E6 Alg1-201ENSMUST00000049207 1669 ntAPPRIS ALT2 TSL 2 BASIC15.24■□□□□ 0.03
Trav6-3Q5R1E6 Hmgxb3-201ENSMUST00000091884 5101 ntAPPRIS P1 TSL 1 (best) BASIC15.24■□□□□ 0.03
Trav6-3Q5R1E6 Nat14-204ENSMUST00000207687 1415 ntAPPRIS P1 TSL 1 (best) BASIC15.24■□□□□ 0.03
Trav6-3Q5R1E6 Ahcyl2-204ENSMUST00000115242 5152 ntAPPRIS P3 TSL 1 (best) BASIC15.24■□□□□ 0.03
Trav6-3Q5R1E6 Fam78b-205ENSMUST00000165874 4986 ntAPPRIS P1 TSL 1 (best) BASIC15.24■□□□□ 0.03
Trav6-3Q5R1E6 Nubp1-201ENSMUST00000023146 2121 ntAPPRIS P1 TSL 1 (best) BASIC15.23■□□□□ 0.03
Trav6-3Q5R1E6 Smap1-201ENSMUST00000027339 2289 ntAPPRIS P1 TSL 1 (best) BASIC15.23■□□□□ 0.03
Trav6-3Q5R1E6 Iars2-203ENSMUST00000110975 2801 ntTSL 5 BASIC15.23■□□□□ 0.03
Trav6-3Q5R1E6 Snx4-201ENSMUST00000023502 2442 ntAPPRIS P1 TSL 1 (best) BASIC15.23■□□□□ 0.03
Trav6-3Q5R1E6 Igf2bp2-201ENSMUST00000100052 3899 ntAPPRIS P1 TSL 1 (best) BASIC15.23■□□□□ 0.03
Trav6-3Q5R1E6 Taf3-203ENSMUST00000114907 695 ntTSL 1 (best) BASIC15.23■□□□□ 0.03
Trav6-3Q5R1E6 BC004004-202ENSMUST00000120346 1297 ntAPPRIS P1 TSL 5 BASIC15.23■□□□□ 0.03
Trav6-3Q5R1E6 Hyi-205ENSMUST00000194248 936 ntTSL 1 (best) BASIC15.23■□□□□ 0.03
Trav6-3Q5R1E6 Med31-201ENSMUST00000021157 1161 ntAPPRIS P1 TSL 1 (best) BASIC15.23■□□□□ 0.03
Trav6-3Q5R1E6 Gsc-201ENSMUST00000021513 1268 ntAPPRIS P1 TSL 1 (best) BASIC15.23■□□□□ 0.03
Trav6-3Q5R1E6 Rnaset2b-201ENSMUST00000089119 1013 ntAPPRIS P1 TSL 1 (best) BASIC15.23■□□□□ 0.03
Trav6-3Q5R1E6 Pcgf3-202ENSMUST00000112597 2169 ntTSL 1 (best) BASIC15.23■□□□□ 0.03
Trav6-3Q5R1E6 Palm-202ENSMUST00000105379 2519 ntTSL 1 (best) BASIC15.23■□□□□ 0.03
Trav6-3Q5R1E6 Nfatc2-201ENSMUST00000029057 2310 ntTSL 1 (best) BASIC15.23■□□□□ 0.03
Trav6-3Q5R1E6 Mgarp-202ENSMUST00000108046 1409 ntTSL 1 (best) BASIC15.23■□□□□ 0.03
Trav6-3Q5R1E6 Kmt2b-201ENSMUST00000006470 8469 ntAPPRIS ALT2 TSL 5 BASIC15.23■□□□□ 0.03
Trav6-3Q5R1E6 Fam118a-201ENSMUST00000023069 2543 ntAPPRIS P1 TSL 1 (best) BASIC15.22■□□□□ 0.03
Trav6-3Q5R1E6 Smyd2-201ENSMUST00000027897 1680 ntAPPRIS P1 TSL 1 (best) BASIC15.22■□□□□ 0.03
Trav6-3Q5R1E6 Parl-201ENSMUST00000048642 1348 ntAPPRIS P1 TSL 1 (best) BASIC15.22■□□□□ 0.03
Trav6-3Q5R1E6 Mafg-201ENSMUST00000058162 4923 ntAPPRIS P1 TSL 1 (best) BASIC15.22■□□□□ 0.03
Trav6-3Q5R1E6 Ttyh3-201ENSMUST00000042661 4658 ntAPPRIS P1 TSL 1 (best) BASIC15.22■□□□□ 0.03
Trav6-3Q5R1E6 Trim71-201ENSMUST00000111816 9332 ntAPPRIS P1 TSL 1 (best) BASIC15.22■□□□□ 0.03
Trav6-3Q5R1E6 Spg7-209ENSMUST00000149248 2896 ntAPPRIS P2 TSL 1 (best) BASIC15.22■□□□□ 0.03
Trav6-3Q5R1E6 0610010K14Rik-208ENSMUST00000108578 880 ntAPPRIS ALT2 TSL 1 (best) BASIC15.22■□□□□ 0.03
Trav6-3Q5R1E6 Gemin7-203ENSMUST00000119912 653 ntAPPRIS P1 TSL 3 BASIC15.22■□□□□ 0.03
Trav6-3Q5R1E6 Rps2-ps10-202ENSMUST00000170335 965 ntBASIC15.22■□□□□ 0.03
Trav6-3Q5R1E6 Fzd8-201ENSMUST00000041080 3346 ntAPPRIS P1 BASIC15.22■□□□□ 0.03
Retrieved 100 of 76,532 protein–RNA pairs in 53.7 ms