Protein–RNA interactions for Protein: Q5R1B6

Trav8d-2, T cell receptor alpha variable 8D-2 (Fragment), mousemouse

Predictions only

Length 112 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Trav8d-2Q5R1B6 Mcrip2-201ENSMUST00000026828 816 ntAPPRIS P1 TSL 1 (best) BASIC18.69■□□□□ 0.58
Trav8d-2Q5R1B6 Carm1-203ENSMUST00000115395 3152 ntAPPRIS ALT2 TSL 1 (best) BASIC18.69■□□□□ 0.58
Trav8d-2Q5R1B6 Rfx5-205ENSMUST00000107260 2355 ntAPPRIS P1 TSL 5 BASIC18.69■□□□□ 0.58
Trav8d-2Q5R1B6 Hck-202ENSMUST00000109799 2092 ntAPPRIS ALT2 TSL 1 (best) BASIC18.69■□□□□ 0.58
Trav8d-2Q5R1B6 Hck-203ENSMUST00000189688 2090 ntAPPRIS ALT2 TSL 1 (best) BASIC18.69■□□□□ 0.58
Trav8d-2Q5R1B6 Hck-201ENSMUST00000003370 2092 ntAPPRIS ALT2 TSL 1 (best) BASIC18.69■□□□□ 0.58
Trav8d-2Q5R1B6 Lrg1-201ENSMUST00000041357 1351 ntAPPRIS P1 TSL 1 (best) BASIC18.68■□□□□ 0.58
Trav8d-2Q5R1B6 BC005561-201ENSMUST00000096452 5409 ntAPPRIS P1 TSL 2 BASIC18.68■□□□□ 0.58
Trav8d-2Q5R1B6 Fbxo22-204ENSMUST00000146201 2009 ntTSL 1 (best) BASIC18.68■□□□□ 0.58
Trav8d-2Q5R1B6 Atox1-201ENSMUST00000108857 541 ntAPPRIS P1 TSL 1 (best) BASIC18.68■□□□□ 0.58
Trav8d-2Q5R1B6 Tsen2-203ENSMUST00000130425 638 ntTSL 3 BASIC18.68■□□□□ 0.58
Trav8d-2Q5R1B6 Gm20390-201ENSMUST00000170303 991 ntAPPRIS P1 TSL 5 BASIC18.68■□□□□ 0.58
Trav8d-2Q5R1B6 Gm26971-201ENSMUST00000182423 1072 ntBASIC18.68■□□□□ 0.58
Trav8d-2Q5R1B6 2510002D24Rik-204ENSMUST00000191388 995 ntTSL 5 BASIC18.68■□□□□ 0.58
Trav8d-2Q5R1B6 4930554C24Rik-202ENSMUST00000216019 1159 ntTSL 5 BASIC18.68■□□□□ 0.58
Trav8d-2Q5R1B6 Fitm1-201ENSMUST00000022826 971 ntAPPRIS P1 TSL 1 (best) BASIC18.68■□□□□ 0.58
Trav8d-2Q5R1B6 Edn2-201ENSMUST00000030384 1462 ntAPPRIS P1 TSL 1 (best) BASIC18.68■□□□□ 0.58
Trav8d-2Q5R1B6 Pbx2-201ENSMUST00000038149 3068 ntAPPRIS P1 TSL 1 (best) BASIC18.68■□□□□ 0.58
Trav8d-2Q5R1B6 Macrod2-207ENSMUST00000110067 4730 ntAPPRIS ALT2 TSL 5 BASIC18.68■□□□□ 0.58
Trav8d-2Q5R1B6 1700065D16Rik-204ENSMUST00000189348 1540 ntTSL 2 BASIC18.68■□□□□ 0.58
Trav8d-2Q5R1B6 Tbx3os2-201ENSMUST00000135385 1345 ntTSL 1 (best) BASIC18.68■□□□□ 0.58
Trav8d-2Q5R1B6 Kalrn-208ENSMUST00000114961 6128 ntTSL 5 BASIC18.68■□□□□ 0.58
Trav8d-2Q5R1B6 Baiap2-205ENSMUST00000106233 2442 ntAPPRIS ALT2 TSL 5 BASIC18.68■□□□□ 0.58
Trav8d-2Q5R1B6 Dxo-211ENSMUST00000180043 1447 ntAPPRIS P1 TSL 5 BASIC18.67■□□□□ 0.58
Trav8d-2Q5R1B6 Nab1-201ENSMUST00000069792 3874 ntAPPRIS P2 TSL 1 (best) BASIC18.67■□□□□ 0.58
Trav8d-2Q5R1B6 Col23a1-201ENSMUST00000102765 5658 ntAPPRIS P1 TSL 5 BASIC18.67■□□□□ 0.58
Trav8d-2Q5R1B6 Plk5-202ENSMUST00000105351 2100 ntAPPRIS ALT2 TSL 1 (best) BASIC18.67■□□□□ 0.58
Trav8d-2Q5R1B6 Plk5-201ENSMUST00000039836 2112 ntAPPRIS P3 TSL 2 BASIC18.67■□□□□ 0.58
Trav8d-2Q5R1B6 Snca-201ENSMUST00000114268 1280 ntAPPRIS P1 TSL 1 (best) BASIC18.67■□□□□ 0.58
Trav8d-2Q5R1B6 Mir1199-201ENSMUST00000117015 119 ntBASIC18.67■□□□□ 0.58
Trav8d-2Q5R1B6 Klf13-204ENSMUST00000185175 487 ntTSL 2 BASIC18.67■□□□□ 0.58
Trav8d-2Q5R1B6 AC122465.1-201ENSMUST00000220813 1209 ntTSL 1 (best) BASIC18.67■□□□□ 0.58
Trav8d-2Q5R1B6 Id1-201ENSMUST00000038368 934 ntAPPRIS P2 TSL 1 (best) BASIC18.67■□□□□ 0.58
Trav8d-2Q5R1B6 Fam20b-202ENSMUST00000122424 4532 ntAPPRIS P1 TSL 5 BASIC18.67■□□□□ 0.58
Trav8d-2Q5R1B6 Ttc39a-203ENSMUST00000106619 1778 ntTSL 1 (best) BASIC18.67■□□□□ 0.58
Trav8d-2Q5R1B6 Atp2b2-208ENSMUST00000205052 5658 ntTSL 1 (best) BASIC18.66■□□□□ 0.58
Trav8d-2Q5R1B6 Tnks2-201ENSMUST00000025729 6481 ntAPPRIS P1 TSL 5 BASIC18.66■□□□□ 0.58
Trav8d-2Q5R1B6 Gm2399-201ENSMUST00000104944 225 ntBASIC18.66■□□□□ 0.58
Trav8d-2Q5R1B6 Zfp467-208ENSMUST00000114564 626 ntTSL 2 BASIC18.66■□□□□ 0.58
Trav8d-2Q5R1B6 Cldn14-205ENSMUST00000177648 1266 ntAPPRIS P1 TSL 2 BASIC18.66■□□□□ 0.58
Trav8d-2Q5R1B6 Ypel1-201ENSMUST00000035682 3322 ntAPPRIS P1 TSL 1 (best) BASIC18.66■□□□□ 0.58
Trav8d-2Q5R1B6 Hnrnph3-202ENSMUST00000118898 2168 ntAPPRIS ALT1 TSL 5 BASIC18.66■□□□□ 0.58
Trav8d-2Q5R1B6 Nt5c3b-204ENSMUST00000107398 1635 ntTSL 1 (best) BASIC18.66■□□□□ 0.58
Trav8d-2Q5R1B6 Thegl-202ENSMUST00000117880 1641 ntAPPRIS P1 TSL 1 (best) BASIC18.66■□□□□ 0.58
Trav8d-2Q5R1B6 Slc35f4-201ENSMUST00000074368 1931 ntAPPRIS P1 TSL 1 (best) BASIC18.66■□□□□ 0.58
Trav8d-2Q5R1B6 Cnrip1-201ENSMUST00000058159 1654 ntAPPRIS P1 TSL 1 (best) BASIC18.66■□□□□ 0.58
Trav8d-2Q5R1B6 Nsfl1c-203ENSMUST00000103160 1369 ntTSL 5 BASIC18.66■□□□□ 0.58
Trav8d-2Q5R1B6 Dhrs7-201ENSMUST00000021512 1385 ntAPPRIS P1 TSL 1 (best) BASIC18.66■□□□□ 0.58
Trav8d-2Q5R1B6 Bfsp1-202ENSMUST00000099296 2160 ntAPPRIS ALT2 TSL 1 (best) BASIC18.65■□□□□ 0.58
Trav8d-2Q5R1B6 Slc35b3-209ENSMUST00000225432 2216 ntAPPRIS P3 BASIC18.65■□□□□ 0.58
Trav8d-2Q5R1B6 Gm28523-201ENSMUST00000190040 1588 ntTSL 1 (best) BASIC18.65■□□□□ 0.58
Trav8d-2Q5R1B6 Best2-202ENSMUST00000209322 1944 ntAPPRIS P1 TSL 1 (best) BASIC18.65■□□□□ 0.58
Trav8d-2Q5R1B6 Papd7-202ENSMUST00000198607 4750 ntAPPRIS ALT2 TSL 1 (best) BASIC18.65■□□□□ 0.58
Trav8d-2Q5R1B6 Atp5c1-203ENSMUST00000114897 1166 ntAPPRIS P2 TSL 1 (best) BASIC18.65■□□□□ 0.58
Trav8d-2Q5R1B6 H2-K2-201ENSMUST00000174250 1049 ntBASIC18.65■□□□□ 0.58
Trav8d-2Q5R1B6 9430060I03Rik-201ENSMUST00000191563 1689 ntTSL 1 (best) BASIC18.65■□□□□ 0.58
Trav8d-2Q5R1B6 Usp21-203ENSMUST00000111306 2185 ntAPPRIS ALT1 TSL 1 (best) BASIC18.65■□□□□ 0.58
Trav8d-2Q5R1B6 Zfp444-203ENSMUST00000108566 1648 ntAPPRIS P1 TSL 1 (best) BASIC18.64■□□□□ 0.57
Trav8d-2Q5R1B6 Dirc2-201ENSMUST00000023554 5395 ntAPPRIS P1 TSL 1 (best) BASIC18.64■□□□□ 0.57
Trav8d-2Q5R1B6 Gm37035-201ENSMUST00000194809 2148 ntBASIC18.64■□□□□ 0.57
Trav8d-2Q5R1B6 Nipsnap2-201ENSMUST00000086046 2112 ntAPPRIS P1 TSL 1 (best) BASIC18.64■□□□□ 0.57
Trav8d-2Q5R1B6 Socs2-214ENSMUST00000172070 2153 ntAPPRIS P1 TSL 2 BASIC18.64■□□□□ 0.57
Trav8d-2Q5R1B6 Dusp7-201ENSMUST00000172306 3213 ntAPPRIS P1 TSL 1 (best) BASIC18.64■□□□□ 0.57
Trav8d-2Q5R1B6 Gm14321-201ENSMUST00000127441 632 ntTSL 3 BASIC18.64■□□□□ 0.57
Trav8d-2Q5R1B6 D830050J10Rik-202ENSMUST00000203858 1813 ntBASIC18.64■□□□□ 0.57
Trav8d-2Q5R1B6 Hpdl-201ENSMUST00000055436 1804 ntAPPRIS P1 BASIC18.64■□□□□ 0.57
Trav8d-2Q5R1B6 Spock1-201ENSMUST00000172326 1320 ntAPPRIS P3 TSL 5 BASIC18.64■□□□□ 0.57
Trav8d-2Q5R1B6 Irak1-207ENSMUST00000114360 2441 ntAPPRIS ALT2 TSL 1 (best) BASIC18.64■□□□□ 0.57
Trav8d-2Q5R1B6 Ccdc107-202ENSMUST00000107922 865 ntAPPRIS ALT2 TSL 2 BASIC18.63■□□□□ 0.57
Trav8d-2Q5R1B6 Gm13158-201ENSMUST00000122007 736 ntBASIC18.63■□□□□ 0.57
Trav8d-2Q5R1B6 Gm19610-201ENSMUST00000202894 408 ntTSL 1 (best) BASIC18.63■□□□□ 0.57
Trav8d-2Q5R1B6 Zfp787-204ENSMUST00000207628 576 ntTSL 1 (best) BASIC18.63■□□□□ 0.57
Trav8d-2Q5R1B6 Zfp580-202ENSMUST00000208570 693 ntAPPRIS ALT2 TSL 1 (best) BASIC18.63■□□□□ 0.57
Trav8d-2Q5R1B6 2510002D24Rik-201ENSMUST00000055413 1281 ntAPPRIS P1 TSL 1 (best) BASIC18.63■□□□□ 0.57
Trav8d-2Q5R1B6 Gm7579-201ENSMUST00000097943 732 ntAPPRIS P1 BASIC18.63■□□□□ 0.57
Trav8d-2Q5R1B6 Ccdc124-201ENSMUST00000007865 1356 ntAPPRIS P1 TSL 1 (best) BASIC18.63■□□□□ 0.57
Trav8d-2Q5R1B6 Ezh2-204ENSMUST00000114618 2775 ntTSL 1 (best) BASIC18.63■□□□□ 0.57
Trav8d-2Q5R1B6 Ezh2-201ENSMUST00000081721 2787 ntAPPRIS P2 TSL 1 (best) BASIC18.63■□□□□ 0.57
Trav8d-2Q5R1B6 Rbmxl1-201ENSMUST00000049245 1695 ntAPPRIS P1 TSL 1 (best) BASIC18.63■□□□□ 0.57
Trav8d-2Q5R1B6 Mdfi-202ENSMUST00000066368 1711 ntAPPRIS P1 TSL 1 (best) BASIC18.63■□□□□ 0.57
Trav8d-2Q5R1B6 Phb-204ENSMUST00000125172 1799 ntAPPRIS P1 TSL 1 (best) BASIC18.63■□□□□ 0.57
Trav8d-2Q5R1B6 Pacsin3-215ENSMUST00000168916 1859 ntAPPRIS P1 TSL 1 (best) BASIC18.63■□□□□ 0.57
Trav8d-2Q5R1B6 Pacsin3-201ENSMUST00000028694 1862 ntAPPRIS P1 TSL 1 (best) BASIC18.63■□□□□ 0.57
Trav8d-2Q5R1B6 Cdkl3-202ENSMUST00000063321 2008 ntAPPRIS ALT2 TSL 1 (best) BASIC18.62■□□□□ 0.57
Trav8d-2Q5R1B6 Pigp-202ENSMUST00000113906 745 ntAPPRIS P1 TSL 1 (best) BASIC18.62■□□□□ 0.57
Trav8d-2Q5R1B6 Nrn1-202ENSMUST00000122286 691 ntTSL 3 BASIC18.62■□□□□ 0.57
Trav8d-2Q5R1B6 2210408F21Rik-204ENSMUST00000136571 478 ntTSL 3 BASIC18.62■□□□□ 0.57
Trav8d-2Q5R1B6 Dmrta2os-202ENSMUST00000141893 691 ntTSL 3 BASIC18.62■□□□□ 0.57
Trav8d-2Q5R1B6 Arpc4-202ENSMUST00000171058 695 ntTSL 5 BASIC18.62■□□□□ 0.57
Trav8d-2Q5R1B6 1600023N17Rik-201ENSMUST00000196242 1007 ntBASIC18.62■□□□□ 0.57
Trav8d-2Q5R1B6 D930007J09Rik-201ENSMUST00000057911 393 ntAPPRIS P1 BASIC18.62■□□□□ 0.57
Trav8d-2Q5R1B6 Psmd4-201ENSMUST00000071664 1276 ntAPPRIS ALT2 TSL 1 (best) BASIC18.62■□□□□ 0.57
Trav8d-2Q5R1B6 Psmd6-201ENSMUST00000022256 1387 ntAPPRIS P1 TSL 1 (best) BASIC18.62■□□□□ 0.57
Trav8d-2Q5R1B6 Paqr3-201ENSMUST00000069453 1375 ntAPPRIS P1 TSL 1 (best) BASIC18.62■□□□□ 0.57
Trav8d-2Q5R1B6 Gm45472-201ENSMUST00000211295 1426 ntTSL 5 BASIC18.62■□□□□ 0.57
Trav8d-2Q5R1B6 Pelo-201ENSMUST00000109226 1600 ntAPPRIS P1 TSL 1 (best) BASIC18.62■□□□□ 0.57
Trav8d-2Q5R1B6 Hif1a-203ENSMUST00000110464 1759 ntTSL 1 (best) BASIC18.62■□□□□ 0.57
Trav8d-2Q5R1B6 Cntln-204ENSMUST00000169371 5365 ntAPPRIS ALT2 TSL 5 BASIC18.62■□□□□ 0.57
Trav8d-2Q5R1B6 Ntf5-201ENSMUST00000058879 1963 ntAPPRIS P1 TSL 1 (best) BASIC18.62■□□□□ 0.57
Trav8d-2Q5R1B6 Magi2-206ENSMUST00000197443 6578 ntAPPRIS ALT2 TSL 5 BASIC18.62■□□□□ 0.57
Retrieved 100 of 76,532 protein–RNA pairs in 32.5 ms