Protein–RNA interactions for Protein: Q4QRL3

Ccdc88b, Coiled-coil domain-containing protein 88B, mousemouse

Predictions only

Length 1,481 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Ccdc88bQ4QRL3 Kcng2-201ENSMUST00000077962 2813 ntAPPRIS P1 TSL 5 BASIC31.39■■■□□ 2.62
Ccdc88bQ4QRL3 Kif1bp-202ENSMUST00000159704 2622 ntTSL 1 (best) BASIC31.39■■■□□ 2.62
Ccdc88bQ4QRL3 Eda-204ENSMUST00000113777 1056 ntTSL 5 BASIC31.39■■■□□ 2.62
Ccdc88bQ4QRL3 Eda-201ENSMUST00000071453 1152 ntTSL 1 (best) BASIC31.39■■■□□ 2.62
Ccdc88bQ4QRL3 Rell2-210ENSMUST00000176104 2150 ntAPPRIS P1 TSL 5 BASIC31.39■■■□□ 2.61
Ccdc88bQ4QRL3 Barx2-201ENSMUST00000116615 1968 ntAPPRIS P1 TSL 1 (best) BASIC31.38■■■□□ 2.61
Ccdc88bQ4QRL3 Runx2-207ENSMUST00000160673 1791 ntAPPRIS ALT2 TSL 1 (best) BASIC31.38■■■□□ 2.61
Ccdc88bQ4QRL3 Kcne1l-201ENSMUST00000134825 1543 ntAPPRIS P1 BASIC31.38■■■□□ 2.61
Ccdc88bQ4QRL3 Mrpl10-202ENSMUST00000054252 744 ntTSL 5 BASIC31.38■■■□□ 2.61
Ccdc88bQ4QRL3 Rpl21-203ENSMUST00000099272 1067 ntAPPRIS P1 TSL 3 BASIC31.38■■■□□ 2.61
Ccdc88bQ4QRL3 Fam105a-201ENSMUST00000100739 2867 ntTSL 1 (best) BASIC31.37■■■□□ 2.61
Ccdc88bQ4QRL3 C1qtnf5-202ENSMUST00000114816 1259 ntAPPRIS P1 TSL 1 (best) BASIC31.37■■■□□ 2.61
Ccdc88bQ4QRL3 Kcmf1-206ENSMUST00000206378 544 ntTSL 5 BASIC31.37■■■□□ 2.61
Ccdc88bQ4QRL3 Kctd2-202ENSMUST00000106533 2649 ntTSL 1 (best) BASIC31.37■■■□□ 2.61
Ccdc88bQ4QRL3 Srxn1-201ENSMUST00000041500 2812 ntAPPRIS P1 TSL 1 (best) BASIC31.37■■■□□ 2.61
Ccdc88bQ4QRL3 Naglu-201ENSMUST00000001802 2560 ntAPPRIS P1 TSL 1 (best) BASIC31.36■■■□□ 2.61
Ccdc88bQ4QRL3 Arrb2-202ENSMUST00000084954 1732 ntTSL 5 BASIC31.36■■■□□ 2.61
Ccdc88bQ4QRL3 Kcnn4-202ENSMUST00000205428 1945 ntAPPRIS P1 TSL 1 (best) BASIC31.36■■■□□ 2.61
Ccdc88bQ4QRL3 Brsk1-201ENSMUST00000048248 2996 ntAPPRIS P1 TSL 1 (best) BASIC31.36■■■□□ 2.61
Ccdc88bQ4QRL3 Gm11713-201ENSMUST00000139941 523 ntTSL 3 BASIC31.36■■■□□ 2.61
Ccdc88bQ4QRL3 Atp23-202ENSMUST00000168520 1043 ntAPPRIS P1 TSL 1 (best) BASIC31.36■■■□□ 2.61
Ccdc88bQ4QRL3 Cklf-203ENSMUST00000211809 525 ntAPPRIS ALT2 TSL 1 (best) BASIC31.36■■■□□ 2.61
Ccdc88bQ4QRL3 Lgmn-202ENSMUST00000110020 1835 ntAPPRIS P1 TSL 1 (best) BASIC31.36■■■□□ 2.61
Ccdc88bQ4QRL3 Gm11769-201ENSMUST00000140273 1657 ntTSL 1 (best) BASIC31.36■■■□□ 2.61
Ccdc88bQ4QRL3 Tsen54-202ENSMUST00000106481 1862 ntAPPRIS ALT2 TSL 1 (best) BASIC31.36■■■□□ 2.61
Ccdc88bQ4QRL3 Gm44878-201ENSMUST00000205812 1295 ntBASIC31.35■■■□□ 2.61
Ccdc88bQ4QRL3 1700067K01Rik-201ENSMUST00000060357 1291 ntAPPRIS ALT2 TSL 1 (best) BASIC31.35■■■□□ 2.61
Ccdc88bQ4QRL3 Chpt1-202ENSMUST00000073783 852 ntAPPRIS ALT2 TSL 1 (best) BASIC31.35■■■□□ 2.61
Ccdc88bQ4QRL3 Ube2s-201ENSMUST00000079496 1238 ntAPPRIS P1 TSL 1 (best) BASIC31.35■■■□□ 2.61
Ccdc88bQ4QRL3 Mbip-201ENSMUST00000021416 1512 ntAPPRIS P1 TSL 1 (best) BASIC31.35■■■□□ 2.61
Ccdc88bQ4QRL3 Nphp1-202ENSMUST00000110357 2296 ntAPPRIS ALT2 TSL 1 (best) BASIC31.35■■■□□ 2.61
Ccdc88bQ4QRL3 Sra1-201ENSMUST00000001415 2061 ntAPPRIS P4 TSL 5 BASIC31.35■■■□□ 2.61
Ccdc88bQ4QRL3 Krt76-201ENSMUST00000100179 2312 ntAPPRIS P1 TSL 1 (best) BASIC31.35■■■□□ 2.61
Ccdc88bQ4QRL3 Tradd-201ENSMUST00000034359 1689 ntAPPRIS P1 TSL 1 (best) BASIC31.35■■■□□ 2.61
Ccdc88bQ4QRL3 Gal3st3-201ENSMUST00000061169 2421 ntAPPRIS P1 TSL 1 (best) BASIC31.35■■■□□ 2.61
Ccdc88bQ4QRL3 Trim72-201ENSMUST00000081042 1755 ntAPPRIS P1 TSL 1 (best) BASIC31.34■■■□□ 2.61
Ccdc88bQ4QRL3 1110004F10Rik-202ENSMUST00000106607 1153 ntTSL 1 (best) BASIC31.34■■■□□ 2.61
Ccdc88bQ4QRL3 Gm29458-201ENSMUST00000187093 354 ntTSL 3 BASIC31.34■■■□□ 2.61
Ccdc88bQ4QRL3 Trmt13-210ENSMUST00000198454 880 ntBASIC31.34■■■□□ 2.61
Ccdc88bQ4QRL3 Nol7-201ENSMUST00000071926 1800 ntAPPRIS P2 TSL 1 (best) BASIC31.34■■■□□ 2.61
Ccdc88bQ4QRL3 Porcn-202ENSMUST00000082320 1883 ntAPPRIS ALT1 TSL 1 (best) BASIC31.34■■■□□ 2.61
Ccdc88bQ4QRL3 Zfp36l1-202ENSMUST00000165114 1934 ntAPPRIS P1 TSL 5 BASIC31.34■■■□□ 2.61
Ccdc88bQ4QRL3 Kis2-201ENSMUST00000133214 1717 ntTSL 1 (best) BASIC31.34■■■□□ 2.61
Ccdc88bQ4QRL3 Tmem79-202ENSMUST00000107552 2063 ntAPPRIS P1 TSL 5 BASIC31.34■■■□□ 2.61
Ccdc88bQ4QRL3 Ern1-203ENSMUST00000106800 654 ntTSL 3 BASIC31.33■■■□□ 2.61
Ccdc88bQ4QRL3 Alcam-206ENSMUST00000168071 878 ntTSL 1 (best) BASIC31.33■■■□□ 2.61
Ccdc88bQ4QRL3 Hist2h2aa2-201ENSMUST00000074976 528 ntAPPRIS P1 BASIC31.33■■■□□ 2.61
Ccdc88bQ4QRL3 Hist2h2aa1-201ENSMUST00000078756 586 ntAPPRIS P1 BASIC31.33■■■□□ 2.61
Ccdc88bQ4QRL3 Gdf1-201ENSMUST00000207684 1349 ntAPPRIS P1 TSL 1 (best) BASIC31.33■■■□□ 2.61
Ccdc88bQ4QRL3 Tedc1-201ENSMUST00000049271 2441 ntAPPRIS P1 TSL 1 (best) BASIC31.33■■■□□ 2.61
Ccdc88bQ4QRL3 Anks3-201ENSMUST00000023157 2483 ntAPPRIS P1 TSL 1 (best) BASIC31.33■■■□□ 2.61
Ccdc88bQ4QRL3 Gm34220-201ENSMUST00000223001 2709 ntBASIC31.33■■■□□ 2.61
Ccdc88bQ4QRL3 Cradd-205ENSMUST00000220279 1613 ntAPPRIS P1 TSL 1 (best) BASIC31.33■■■□□ 2.61
Ccdc88bQ4QRL3 Ndel1-203ENSMUST00000108672 1653 ntTSL 1 (best) BASIC31.33■■■□□ 2.61
Ccdc88bQ4QRL3 Gm13168-201ENSMUST00000121771 632 ntBASIC31.33■■■□□ 2.61
Ccdc88bQ4QRL3 Mrps18a-202ENSMUST00000123646 621 ntTSL 2 BASIC31.33■■■□□ 2.61
Ccdc88bQ4QRL3 Lrrc38-201ENSMUST00000052458 2324 ntAPPRIS P1 TSL 1 (best) BASIC31.32■■■□□ 2.6
Ccdc88bQ4QRL3 Zfp105-201ENSMUST00000051667 2010 ntAPPRIS P1 TSL 1 (best) BASIC31.32■■■□□ 2.6
Ccdc88bQ4QRL3 Hyal2-207ENSMUST00000195752 2062 ntAPPRIS P2 TSL 5 BASIC31.32■■■□□ 2.6
Ccdc88bQ4QRL3 Gm43672-201ENSMUST00000199072 1731 ntBASIC31.32■■■□□ 2.6
Ccdc88bQ4QRL3 Gpc3-202ENSMUST00000114857 1880 ntTSL 1 (best) BASIC31.32■■■□□ 2.6
Ccdc88bQ4QRL3 Pabpn1-205ENSMUST00000141446 912 ntAPPRIS ALT2 TSL 3 BASIC31.32■■■□□ 2.6
Ccdc88bQ4QRL3 Gm20390-201ENSMUST00000170303 991 ntAPPRIS P1 TSL 5 BASIC31.32■■■□□ 2.6
Ccdc88bQ4QRL3 Tnnt2-201ENSMUST00000027671 1064 ntAPPRIS ALT2 TSL 5 BASIC31.32■■■□□ 2.6
Ccdc88bQ4QRL3 Gusb-202ENSMUST00000111307 932 ntTSL 1 (best) BASIC31.31■■■□□ 2.6
Ccdc88bQ4QRL3 Npr3-205ENSMUST00000228603 2437 ntAPPRIS ALT2 BASIC31.3■■■□□ 2.6
Ccdc88bQ4QRL3 Nat9-201ENSMUST00000103038 1143 ntAPPRIS P1 TSL 1 (best) BASIC31.3■■■□□ 2.6
Ccdc88bQ4QRL3 Mrps10-201ENSMUST00000060752 1109 ntTSL 5 BASIC31.3■■■□□ 2.6
Ccdc88bQ4QRL3 Irak1-202ENSMUST00000068286 2537 ntAPPRIS P3 TSL 1 (best) BASIC31.3■■■□□ 2.6
Ccdc88bQ4QRL3 Nfe2-201ENSMUST00000075192 1697 ntAPPRIS P1 TSL 1 (best) BASIC31.3■■■□□ 2.6
Ccdc88bQ4QRL3 Kctd9-201ENSMUST00000078053 3157 ntTSL 1 (best) BASIC31.3■■■□□ 2.6
Ccdc88bQ4QRL3 E4f1-201ENSMUST00000056032 2574 ntAPPRIS P2 TSL 1 (best) BASIC31.3■■■□□ 2.6
Ccdc88bQ4QRL3 1810055G02Rik-201ENSMUST00000039048 1882 ntAPPRIS P1 TSL 1 (best) BASIC31.29■■■□□ 2.6
Ccdc88bQ4QRL3 Josd2-204ENSMUST00000118628 864 ntAPPRIS P1 TSL 2 BASIC31.29■■■□□ 2.6
Ccdc88bQ4QRL3 Nnat-205ENSMUST00000153739 1146 ntAPPRIS ALT1 TSL 1 (best) BASIC31.29■■■□□ 2.6
Ccdc88bQ4QRL3 Nnat-206ENSMUST00000172487 404 ntTSL 5 BASIC31.29■■■□□ 2.6
Ccdc88bQ4QRL3 Nnat-210ENSMUST00000173839 1135 ntTSL 1 (best) BASIC31.29■■■□□ 2.6
Ccdc88bQ4QRL3 Gm2990-201ENSMUST00000180662 1118 ntTSL 1 (best) BASIC31.29■■■□□ 2.6
Ccdc88bQ4QRL3 AC135963.1-201ENSMUST00000211640 717 ntBASIC31.29■■■□□ 2.6
Ccdc88bQ4QRL3 AC142113.1-201ENSMUST00000214931 801 ntTSL 5 BASIC31.29■■■□□ 2.6
Ccdc88bQ4QRL3 Cst3-201ENSMUST00000028938 860 ntAPPRIS P1 TSL 1 (best) BASIC31.29■■■□□ 2.6
Ccdc88bQ4QRL3 Josd2-201ENSMUST00000035844 930 ntAPPRIS P1 TSL 1 (best) BASIC31.29■■■□□ 2.6
Ccdc88bQ4QRL3 Clasp2-211ENSMUST00000216817 2234 ntTSL 1 (best) BASIC31.29■■■□□ 2.6
Ccdc88bQ4QRL3 Esx1-201ENSMUST00000074698 1600 ntAPPRIS P2 TSL 1 (best) BASIC31.29■■■□□ 2.6
Ccdc88bQ4QRL3 D16Ertd472e-202ENSMUST00000114219 1576 ntAPPRIS P1 TSL 1 (best) BASIC31.29■■■□□ 2.6
Ccdc88bQ4QRL3 Rbfox3-202ENSMUST00000069343 1553 ntTSL 1 (best) BASIC31.29■■■□□ 2.6
Ccdc88bQ4QRL3 Srsf10-203ENSMUST00000102544 2225 ntTSL 1 (best) BASIC31.29■■■□□ 2.6
Ccdc88bQ4QRL3 Galnt16-204ENSMUST00000218943 2047 ntAPPRIS P1 TSL 1 (best) BASIC31.28■■■□□ 2.6
Ccdc88bQ4QRL3 Gm8520-201ENSMUST00000186517 868 ntBASIC31.28■■■□□ 2.6
Ccdc88bQ4QRL3 Hspe1-201ENSMUST00000075242 774 ntAPPRIS P1 TSL 1 (best) BASIC31.28■■■□□ 2.6
Ccdc88bQ4QRL3 Ppm1m-203ENSMUST00000140761 1846 ntAPPRIS P1 TSL 1 (best) BASIC31.28■■■□□ 2.6
Ccdc88bQ4QRL3 Gm10167-201ENSMUST00000150411 1479 ntBASIC31.28■■■□□ 2.6
Ccdc88bQ4QRL3 Ptov1-201ENSMUST00000046575 1883 ntAPPRIS P1 TSL 1 (best) BASIC31.28■■■□□ 2.6
Ccdc88bQ4QRL3 Samd10-201ENSMUST00000060173 2164 ntAPPRIS P1 TSL 1 (best) BASIC31.27■■■□□ 2.6
Ccdc88bQ4QRL3 Hoxa10-202ENSMUST00000125581 2565 ntTSL 1 (best) BASIC31.27■■■□□ 2.6
Ccdc88bQ4QRL3 Gm11627-202ENSMUST00000107081 818 ntAPPRIS P1 TSL 2 BASIC31.27■■■□□ 2.6
Ccdc88bQ4QRL3 Fgf22-203ENSMUST00000219981 1070 ntTSL 1 (best) BASIC31.27■■■□□ 2.6
Ccdc88bQ4QRL3 Gtf2h2-201ENSMUST00000066940 1065 ntTSL 1 (best) BASIC31.27■■■□□ 2.6
Ccdc88bQ4QRL3 Olfr1411-201ENSMUST00000073748 972 ntAPPRIS P1 BASIC31.27■■■□□ 2.6
Ccdc88bQ4QRL3 Dstn-201ENSMUST00000103172 1911 ntAPPRIS P1 TSL 1 (best) BASIC31.27■■■□□ 2.6
Retrieved 100 of 76,532 protein–RNA pairs in 19.1 ms