Protein–RNA interactions for Protein: Q0EEE2

Ptchd3, Patched domain-containing protein 3, mousemouse

Predictions only

Length 906 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Ptchd3Q0EEE2 Kiz-201ENSMUST00000099278 2183 ntAPPRIS P1 TSL 1 (best) BASIC18.34■□□□□ 0.53
Ptchd3Q0EEE2 Itsn1-206ENSMUST00000113999 5393 ntTSL 5 BASIC18.34■□□□□ 0.53
Ptchd3Q0EEE2 Rasl10b-202ENSMUST00000108140 3156 ntAPPRIS P1 TSL 2 BASIC18.34■□□□□ 0.53
Ptchd3Q0EEE2 Fam78b-205ENSMUST00000165874 4986 ntAPPRIS P1 TSL 1 (best) BASIC18.33■□□□□ 0.53
Ptchd3Q0EEE2 Dap3-201ENSMUST00000090938 4760 ntAPPRIS P2 TSL 1 (best) BASIC18.33■□□□□ 0.53
Ptchd3Q0EEE2 Fbxo24-202ENSMUST00000111002 2306 ntTSL 5 BASIC18.33■□□□□ 0.53
Ptchd3Q0EEE2 Alyref-201ENSMUST00000026125 3527 ntAPPRIS P1 TSL 1 (best) BASIC18.33■□□□□ 0.53
Ptchd3Q0EEE2 Adgra2-202ENSMUST00000178514 5129 ntTSL 5 BASIC18.33■□□□□ 0.52
Ptchd3Q0EEE2 Tmem120b-202ENSMUST00000111619 1256 ntTSL 1 (best) BASIC18.33■□□□□ 0.52
Ptchd3Q0EEE2 Pde6d-203ENSMUST00000146220 879 ntTSL 2 BASIC18.33■□□□□ 0.52
Ptchd3Q0EEE2 Hsd17b3-202ENSMUST00000166224 1286 ntAPPRIS P1 TSL 2 BASIC18.33■□□□□ 0.52
Ptchd3Q0EEE2 Golgb1-201ENSMUST00000023534 498 ntBASIC18.33■□□□□ 0.52
Ptchd3Q0EEE2 Bag1-201ENSMUST00000030125 1295 ntAPPRIS ALT2 TSL 1 (best) BASIC18.33■□□□□ 0.52
Ptchd3Q0EEE2 Sdsl-202ENSMUST00000052258 1225 ntAPPRIS P1 TSL 1 (best) BASIC18.33■□□□□ 0.52
Ptchd3Q0EEE2 Rnf44-208ENSMUST00000128257 1689 ntTSL 5 BASIC18.33■□□□□ 0.52
Ptchd3Q0EEE2 Paics-201ENSMUST00000031160 2482 ntAPPRIS P1 TSL 1 (best) BASIC18.33■□□□□ 0.52
Ptchd3Q0EEE2 Btnl9-202ENSMUST00000066531 1945 ntAPPRIS ALT2 TSL 1 (best) BASIC18.33■□□□□ 0.52
Ptchd3Q0EEE2 Rhobtb3-201ENSMUST00000022078 4980 ntAPPRIS P1 TSL 1 (best) BASIC18.33■□□□□ 0.52
Ptchd3Q0EEE2 Dennd2a-201ENSMUST00000036877 4468 ntAPPRIS P1 TSL 1 (best) BASIC18.33■□□□□ 0.52
Ptchd3Q0EEE2 Mzt1-201ENSMUST00000042662 2240 ntAPPRIS P1 TSL 1 (best) BASIC18.33■□□□□ 0.52
Ptchd3Q0EEE2 Nr0b1-201ENSMUST00000026036 1808 ntAPPRIS P1 TSL 1 (best) BASIC18.33■□□□□ 0.52
Ptchd3Q0EEE2 Dtwd2-201ENSMUST00000025383 2476 ntAPPRIS P1 TSL 1 (best) BASIC18.32■□□□□ 0.52
Ptchd3Q0EEE2 Sec61a2-202ENSMUST00000102981 2448 ntAPPRIS P1 TSL 1 (best) BASIC18.32■□□□□ 0.52
Ptchd3Q0EEE2 Hyal2-207ENSMUST00000195752 2062 ntAPPRIS P2 TSL 5 BASIC18.32■□□□□ 0.52
Ptchd3Q0EEE2 Map6-206ENSMUST00000208605 2275 ntAPPRIS ALT2 TSL 1 (best) BASIC18.32■□□□□ 0.52
Ptchd3Q0EEE2 Gpr162-204ENSMUST00000204667 2855 ntAPPRIS P1 TSL 1 (best) BASIC18.32■□□□□ 0.52
Ptchd3Q0EEE2 Tusc2-203ENSMUST00000193418 410 ntTSL 3 BASIC18.32■□□□□ 0.52
Ptchd3Q0EEE2 Hoxb7-201ENSMUST00000049352 1291 ntAPPRIS P1 TSL 1 (best) BASIC18.32■□□□□ 0.52
Ptchd3Q0EEE2 C1ql4-201ENSMUST00000064462 874 ntAPPRIS P1 TSL 1 (best) BASIC18.32■□□□□ 0.52
Ptchd3Q0EEE2 Gpc6-204ENSMUST00000125435 2423 ntAPPRIS ALT2 TSL 1 (best) BASIC18.32■□□□□ 0.52
Ptchd3Q0EEE2 Glra1-203ENSMUST00000108853 1797 ntTSL 5 BASIC18.32■□□□□ 0.52
Ptchd3Q0EEE2 Tpst2-202ENSMUST00000071455 1741 ntAPPRIS P1 TSL 1 (best) BASIC18.32■□□□□ 0.52
Ptchd3Q0EEE2 Sort1-203ENSMUST00000135636 6836 ntAPPRIS ALT2 TSL 1 (best) BASIC18.32■□□□□ 0.52
Ptchd3Q0EEE2 Nlgn2-202ENSMUST00000108634 5568 ntAPPRIS P1 TSL 1 (best) BASIC18.31■□□□□ 0.52
Ptchd3Q0EEE2 Dlgap2-209ENSMUST00000152652 3842 ntAPPRIS P4 TSL 1 (best) BASIC18.31■□□□□ 0.52
Ptchd3Q0EEE2 Grk6-206ENSMUST00000224995 2971 ntBASIC18.31■□□□□ 0.52
Ptchd3Q0EEE2 Ncor1-203ENSMUST00000069456 3171 ntTSL 1 (best) BASIC18.31■□□□□ 0.52
Ptchd3Q0EEE2 Mid1-203ENSMUST00000079443 2815 ntTSL 5 BASIC18.31■□□□□ 0.52
Ptchd3Q0EEE2 Syce3-201ENSMUST00000109314 448 ntAPPRIS P1 TSL 1 (best) BASIC18.31■□□□□ 0.52
Ptchd3Q0EEE2 Gm12922-201ENSMUST00000120626 809 ntBASIC18.31■□□□□ 0.52
Ptchd3Q0EEE2 Zfp963-202ENSMUST00000154063 640 ntTSL 3 BASIC18.31■□□□□ 0.52
Ptchd3Q0EEE2 Svbp-201ENSMUST00000030395 733 ntAPPRIS P1 TSL 1 (best) BASIC18.31■□□□□ 0.52
Ptchd3Q0EEE2 Lig3-204ENSMUST00000131537 1782 ntTSL 1 (best) BASIC18.31■□□□□ 0.52
Ptchd3Q0EEE2 Lig3-209ENSMUST00000173009 1785 ntTSL 1 (best) BASIC18.31■□□□□ 0.52
Ptchd3Q0EEE2 Rpap3-201ENSMUST00000023104 2260 ntAPPRIS P1 TSL 1 (best) BASIC18.31■□□□□ 0.52
Ptchd3Q0EEE2 Fmnl2-203ENSMUST00000090952 5414 ntAPPRIS P1 TSL 5 BASIC18.31■□□□□ 0.52
Ptchd3Q0EEE2 Kis2-201ENSMUST00000133214 1717 ntTSL 1 (best) BASIC18.31■□□□□ 0.52
Ptchd3Q0EEE2 Neil2-201ENSMUST00000038229 1932 ntAPPRIS P1 TSL 1 (best) BASIC18.31■□□□□ 0.52
Ptchd3Q0EEE2 Larp1b-202ENSMUST00000048490 2354 ntAPPRIS P2 TSL 1 (best) BASIC18.31■□□□□ 0.52
Ptchd3Q0EEE2 Ankrd17-214ENSMUST00000218526 4938 ntTSL 5 BASIC18.31■□□□□ 0.52
Ptchd3Q0EEE2 1810055G02Rik-201ENSMUST00000039048 1882 ntAPPRIS P1 TSL 1 (best) BASIC18.31■□□□□ 0.52
Ptchd3Q0EEE2 Rhbdd3-202ENSMUST00000101610 2333 ntAPPRIS P1 TSL 1 (best) BASIC18.31■□□□□ 0.52
Ptchd3Q0EEE2 Cyp4f16-201ENSMUST00000003416 2227 ntAPPRIS P1 TSL 1 (best) BASIC18.3■□□□□ 0.52
Ptchd3Q0EEE2 Eif2b4-212ENSMUST00000202758 1767 ntTSL 5 BASIC18.3■□□□□ 0.52
Ptchd3Q0EEE2 Cdh4-201ENSMUST00000000314 6388 ntAPPRIS P1 TSL 1 (best) BASIC18.3■□□□□ 0.52
Ptchd3Q0EEE2 D830036C21Rik-202ENSMUST00000208263 1548 ntBASIC18.3■□□□□ 0.52
Ptchd3Q0EEE2 Bex1-202ENSMUST00000113118 754 ntAPPRIS P1 TSL 2 BASIC18.3■□□□□ 0.52
Ptchd3Q0EEE2 Rnf187-202ENSMUST00000217262 711 ntAPPRIS P2 TSL 1 (best) BASIC18.3■□□□□ 0.52
Ptchd3Q0EEE2 Ntn1-201ENSMUST00000021284 5738 ntAPPRIS P1 TSL 5 BASIC18.3■□□□□ 0.52
Ptchd3Q0EEE2 Srp68-201ENSMUST00000021133 2526 ntAPPRIS P1 TSL 1 (best) BASIC18.3■□□□□ 0.52
Ptchd3Q0EEE2 Eomes-202ENSMUST00000111763 2869 ntAPPRIS ALT2 TSL 1 (best) BASIC18.3■□□□□ 0.52
Ptchd3Q0EEE2 Dpy19l1-203ENSMUST00000142064 3489 ntAPPRIS P1 TSL 5 BASIC18.3■□□□□ 0.52
Ptchd3Q0EEE2 Olig2-201ENSMUST00000035608 2437 ntAPPRIS P1 TSL 1 (best) BASIC18.3■□□□□ 0.52
Ptchd3Q0EEE2 Gm26798-201ENSMUST00000181384 2837 ntTSL 5 BASIC18.3■□□□□ 0.52
Ptchd3Q0EEE2 Mchr1-201ENSMUST00000166855 2188 ntAPPRIS P1 TSL 1 (best) BASIC18.3■□□□□ 0.52
Ptchd3Q0EEE2 Slc35a2-209ENSMUST00000208397 1374 ntAPPRIS ALT2 TSL 5 BASIC18.3■□□□□ 0.52
Ptchd3Q0EEE2 Ccdc102a-201ENSMUST00000077955 2304 ntAPPRIS P1 TSL 1 (best) BASIC18.29■□□□□ 0.52
Ptchd3Q0EEE2 Fbxo27-203ENSMUST00000108281 1948 ntAPPRIS ALT2 TSL 1 (best) BASIC18.29■□□□□ 0.52
Ptchd3Q0EEE2 Fzr1-205ENSMUST00000140901 3057 ntAPPRIS P1 TSL 1 (best) BASIC18.29■□□□□ 0.52
Ptchd3Q0EEE2 Kcnk1-202ENSMUST00000212831 1309 ntTSL 5 BASIC18.29■□□□□ 0.52
Ptchd3Q0EEE2 Ltbp4-205ENSMUST00000121175 5118 ntAPPRIS ALT2 TSL 1 (best) BASIC18.29■□□□□ 0.52
Ptchd3Q0EEE2 Gm8770-201ENSMUST00000121113 1109 ntBASIC18.29■□□□□ 0.52
Ptchd3Q0EEE2 Ankra2-205ENSMUST00000150916 1028 ntTSL 1 (best) BASIC18.29■□□□□ 0.52
Ptchd3Q0EEE2 Hebp2-202ENSMUST00000213153 968 ntTSL 1 (best) BASIC18.29■□□□□ 0.52
Ptchd3Q0EEE2 Pawr-202ENSMUST00000218332 870 ntAPPRIS ALT2 TSL 1 (best) BASIC18.29■□□□□ 0.52
Ptchd3Q0EEE2 Gltpd2-201ENSMUST00000057685 1216 ntAPPRIS P2 TSL 1 (best) BASIC18.29■□□□□ 0.52
Ptchd3Q0EEE2 Grb14-201ENSMUST00000028252 1986 ntAPPRIS P1 TSL 1 (best) BASIC18.29■□□□□ 0.52
Ptchd3Q0EEE2 Adgrl1-207ENSMUST00000141158 8181 ntTSL 1 (best) BASIC18.29■□□□□ 0.52
Ptchd3Q0EEE2 Foxa2-201ENSMUST00000047315 2128 ntAPPRIS P3 TSL 1 (best) BASIC18.29■□□□□ 0.52
Ptchd3Q0EEE2 Rabgap1l-216ENSMUST00000195442 1877 ntTSL 1 (best) BASIC18.29■□□□□ 0.52
Ptchd3Q0EEE2 Atp8b2-202ENSMUST00000107396 5705 ntAPPRIS ALT2 TSL 5 BASIC18.28■□□□□ 0.52
Ptchd3Q0EEE2 Gabarapl1-201ENSMUST00000032264 1820 ntAPPRIS P1 TSL 1 (best) BASIC18.28■□□□□ 0.52
Ptchd3Q0EEE2 Tmem132d-201ENSMUST00000044441 6139 ntAPPRIS P1 TSL 1 (best) BASIC18.28■□□□□ 0.52
Ptchd3Q0EEE2 Epn1-202ENSMUST00000098845 2565 ntAPPRIS P2 TSL 1 (best) BASIC18.28■□□□□ 0.52
Ptchd3Q0EEE2 Tmem79-203ENSMUST00000107553 2053 ntAPPRIS P1 TSL 1 (best) BASIC18.28■□□□□ 0.52
Ptchd3Q0EEE2 0610010K14Rik-209ENSMUST00000108579 667 ntTSL 1 (best) BASIC18.28■□□□□ 0.52
Ptchd3Q0EEE2 Siglec15-201ENSMUST00000170760 1156 ntAPPRIS P1 TSL 1 (best) BASIC18.28■□□□□ 0.52
Ptchd3Q0EEE2 Kiss1-205ENSMUST00000195286 656 ntAPPRIS P1 TSL 1 (best) BASIC18.28■□□□□ 0.52
Ptchd3Q0EEE2 Gm9847-201ENSMUST00000052528 599 ntBASIC18.28■□□□□ 0.52
Ptchd3Q0EEE2 C630004M23Rik-201ENSMUST00000194765 1682 ntBASIC18.28■□□□□ 0.52
Ptchd3Q0EEE2 Impa2-201ENSMUST00000025403 1661 ntAPPRIS P1 TSL 1 (best) BASIC18.28■□□□□ 0.52
Ptchd3Q0EEE2 Zfp579-206ENSMUST00000162731 2489 ntAPPRIS P1 BASIC18.27■□□□□ 0.52
Ptchd3Q0EEE2 Gm37352-201ENSMUST00000193908 2181 ntBASIC18.27■□□□□ 0.52
Ptchd3Q0EEE2 Yipf2-203ENSMUST00000180365 2014 ntAPPRIS P1 TSL 1 (best) BASIC18.27■□□□□ 0.52
Ptchd3Q0EEE2 Snx21-206ENSMUST00000174070 1446 ntTSL 5 BASIC18.27■□□□□ 0.52
Ptchd3Q0EEE2 Spr-203ENSMUST00000174769 1029 ntTSL 1 (best) BASIC18.27■□□□□ 0.52
Ptchd3Q0EEE2 Zswim8-208ENSMUST00000224751 5951 ntAPPRIS ALT2 BASIC18.27■□□□□ 0.51
Ptchd3Q0EEE2 Krt82-201ENSMUST00000023713 2087 ntAPPRIS P1 TSL 1 (best) BASIC18.27■□□□□ 0.51
Ptchd3Q0EEE2 Miga1-201ENSMUST00000068243 2689 ntTSL 1 (best) BASIC18.26■□□□□ 0.51
Ptchd3Q0EEE2 Nubp1-201ENSMUST00000023146 2121 ntAPPRIS P1 TSL 1 (best) BASIC18.26■□□□□ 0.51
Retrieved 100 of 76,532 protein–RNA pairs in 25.9 ms