Protein–RNA interactions for Protein: P70390

Shox2, Short stature homeobox protein 2, mousemouse

Predictions only

Length 331 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Shox2P70390 Fam216a-201ENSMUST00000031419 1388 ntAPPRIS P1 TSL 1 (best) BASIC18.91■□□□□ 0.62
Shox2P70390 Mta1-201ENSMUST00000009099 2826 ntAPPRIS ALT2 TSL 5 BASIC18.91■□□□□ 0.62
Shox2P70390 9030624G23Rik-201ENSMUST00000101538 2245 ntAPPRIS P1 TSL 1 (best) BASIC18.9■□□□□ 0.62
Shox2P70390 Pik3r2-201ENSMUST00000034296 3165 ntAPPRIS P1 TSL 1 (best) BASIC18.9■□□□□ 0.62
Shox2P70390 Smagp-202ENSMUST00000172334 952 ntAPPRIS P1 TSL 2 BASIC18.9■□□□□ 0.62
Shox2P70390 AB124611-203ENSMUST00000173769 1188 ntAPPRIS P3 TSL 1 (best) BASIC18.9■□□□□ 0.62
Shox2P70390 Dexi-203ENSMUST00000184863 2537 ntAPPRIS P1 TSL 2 BASIC18.9■□□□□ 0.62
Shox2P70390 Actl6a-201ENSMUST00000029214 2010 ntAPPRIS P1 TSL 1 (best) BASIC18.9■□□□□ 0.62
Shox2P70390 Rcan3-201ENSMUST00000030606 5111 ntAPPRIS P1 TSL 1 (best) BASIC18.89■□□□□ 0.62
Shox2P70390 Ctnnbip1-201ENSMUST00000030839 2674 ntAPPRIS P1 TSL 1 (best) BASIC18.89■□□□□ 0.62
Shox2P70390 Ube4b-202ENSMUST00000103212 5626 ntAPPRIS P1 TSL 1 (best) BASIC18.89■□□□□ 0.61
Shox2P70390 Lig3-204ENSMUST00000131537 1782 ntTSL 1 (best) BASIC18.89■□□□□ 0.61
Shox2P70390 Lig3-209ENSMUST00000173009 1785 ntTSL 1 (best) BASIC18.89■□□□□ 0.61
Shox2P70390 Sept9-201ENSMUST00000019038 3784 ntAPPRIS ALT2 TSL 1 (best) BASIC18.89■□□□□ 0.61
Shox2P70390 Fgf8-206ENSMUST00000111928 1056 ntTSL 1 (best) BASIC18.89■□□□□ 0.61
Shox2P70390 Zfp703-201ENSMUST00000127097 587 ntTSL 2 BASIC18.89■□□□□ 0.61
Shox2P70390 Efna3-203ENSMUST00000200436 742 ntAPPRIS ALT2 TSL 5 BASIC18.89■□□□□ 0.61
Shox2P70390 H1fx-201ENSMUST00000056403 1217 ntAPPRIS P1 BASIC18.89■□□□□ 0.61
Shox2P70390 Cited4-201ENSMUST00000094814 1249 ntAPPRIS P1 BASIC18.89■□□□□ 0.61
Shox2P70390 Eif4g3-201ENSMUST00000058133 2663 ntTSL 1 (best) BASIC18.89■□□□□ 0.61
Shox2P70390 Sgsm1-204ENSMUST00000112325 2274 ntTSL 1 (best) BASIC18.89■□□□□ 0.61
Shox2P70390 Lmo2-208ENSMUST00000170926 1529 ntAPPRIS P1 TSL 2 BASIC18.89■□□□□ 0.61
Shox2P70390 Atp10a-201ENSMUST00000168747 5419 ntAPPRIS P1 TSL 1 (best) BASIC18.89■□□□□ 0.61
Shox2P70390 Rsph6a-201ENSMUST00000035521 2354 ntAPPRIS P1 TSL 1 (best) BASIC18.89■□□□□ 0.61
Shox2P70390 Map3k21-201ENSMUST00000034316 5693 ntAPPRIS P1 TSL 1 (best) BASIC18.89■□□□□ 0.61
Shox2P70390 Cyth2-201ENSMUST00000056820 2527 ntAPPRIS ALT1 TSL 1 (best) BASIC18.89■□□□□ 0.61
Shox2P70390 Slc16a3-201ENSMUST00000070653 2272 ntAPPRIS P1 TSL 1 (best) BASIC18.88■□□□□ 0.61
Shox2P70390 Crlf3-201ENSMUST00000061283 2396 ntAPPRIS P1 TSL 1 (best) BASIC18.88■□□□□ 0.61
Shox2P70390 Siva1-201ENSMUST00000021728 924 ntAPPRIS P1 TSL 1 (best) BASIC18.88■□□□□ 0.61
Shox2P70390 AC161180.1-201ENSMUST00000223439 933 ntAPPRIS P1 BASIC18.88■□□□□ 0.61
Shox2P70390 Bloc1s5-202ENSMUST00000224115 1020 ntBASIC18.88■□□□□ 0.61
Shox2P70390 Tnk1-202ENSMUST00000108626 1798 ntTSL 1 (best) BASIC18.88■□□□□ 0.61
Shox2P70390 Smim15-205ENSMUST00000225972 2097 ntAPPRIS P1 BASIC18.88■□□□□ 0.61
Shox2P70390 Gab1-201ENSMUST00000034150 4870 ntAPPRIS P1 TSL 1 (best) BASIC18.88■□□□□ 0.61
Shox2P70390 Nrl-201ENSMUST00000062232 2504 ntAPPRIS P1 TSL 1 (best) BASIC18.88■□□□□ 0.61
Shox2P70390 Acvr2b-205ENSMUST00000215746 3175 ntAPPRIS P1 TSL 1 (best) BASIC18.87■□□□□ 0.61
Shox2P70390 Ptpra-201ENSMUST00000028769 3227 ntAPPRIS P1 TSL 1 (best) BASIC18.87■□□□□ 0.61
Shox2P70390 Tmem8-201ENSMUST00000025010 3464 ntAPPRIS P1 TSL 1 (best) BASIC18.87■□□□□ 0.61
Shox2P70390 Coq8b-202ENSMUST00000108378 2276 ntAPPRIS P1 TSL 1 (best) BASIC18.87■□□□□ 0.61
Shox2P70390 Trnt1-202ENSMUST00000113247 1934 ntTSL 1 (best) BASIC18.87■□□□□ 0.61
Shox2P70390 Csnk1a1-206ENSMUST00000165721 2323 ntAPPRIS ALT1 TSL 1 (best) BASIC18.87■□□□□ 0.61
Shox2P70390 Acot1-201ENSMUST00000168120 2272 ntAPPRIS P1 TSL 1 (best) BASIC18.87■□□□□ 0.61
Shox2P70390 5330438I03Rik-201ENSMUST00000168347 2845 ntBASIC18.87■□□□□ 0.61
Shox2P70390 AC154266.1-201ENSMUST00000223190 503 ntBASIC18.87■□□□□ 0.61
Shox2P70390 Cuta-201ENSMUST00000025027 639 ntAPPRIS P3 TSL 1 (best) BASIC18.87■□□□□ 0.61
Shox2P70390 Rem1-201ENSMUST00000000369 1663 ntAPPRIS P1 TSL 1 (best) BASIC18.87■□□□□ 0.61
Shox2P70390 Prmt6-201ENSMUST00000106567 2450 ntAPPRIS P1 BASIC18.86■□□□□ 0.61
Shox2P70390 A430057M04Rik-202ENSMUST00000170150 2176 ntTSL 1 (best) BASIC18.86■□□□□ 0.61
Shox2P70390 Snap91-201ENSMUST00000036347 4237 ntAPPRIS ALT2 TSL 5 BASIC18.86■□□□□ 0.61
Shox2P70390 Ddit4-201ENSMUST00000020308 1755 ntAPPRIS P1 TSL 1 (best) BASIC18.86■□□□□ 0.61
Shox2P70390 D16Ertd472e-202ENSMUST00000114219 1576 ntAPPRIS P1 TSL 1 (best) BASIC18.86■□□□□ 0.61
Shox2P70390 Mboat1-201ENSMUST00000047311 2905 ntAPPRIS P1 TSL 1 (best) BASIC18.86■□□□□ 0.61
Shox2P70390 Gm10420-201ENSMUST00000121713 882 ntBASIC18.86■□□□□ 0.61
Shox2P70390 Gm11691-201ENSMUST00000130963 658 ntTSL 2 BASIC18.86■□□□□ 0.61
Shox2P70390 Rin3-207ENSMUST00000150795 937 ntTSL 1 (best) BASIC18.86■□□□□ 0.61
Shox2P70390 Rem2-201ENSMUST00000164697 1194 ntTSL 5 BASIC18.86■□□□□ 0.61
Shox2P70390 Sec1-201ENSMUST00000040636 2470 ntAPPRIS P1 TSL 1 (best) BASIC18.86■□□□□ 0.61
Shox2P70390 Fam131a-202ENSMUST00000118919 2262 ntTSL 5 BASIC18.86■□□□□ 0.61
Shox2P70390 Cdv3-201ENSMUST00000035484 3387 ntAPPRIS P3 TSL 1 (best) BASIC18.86■□□□□ 0.61
Shox2P70390 Cables1-201ENSMUST00000046948 3202 ntAPPRIS P3 TSL 1 (best) BASIC18.86■□□□□ 0.61
Shox2P70390 Zranb2-203ENSMUST00000106058 2924 ntAPPRIS P2 TSL 1 (best) BASIC18.86■□□□□ 0.61
Shox2P70390 Gm26689-201ENSMUST00000180927 1818 ntTSL 1 (best) BASIC18.86■□□□□ 0.61
Shox2P70390 Gm26553-201ENSMUST00000181531 1818 ntTSL 1 (best) BASIC18.86■□□□□ 0.61
Shox2P70390 Magi2-206ENSMUST00000197443 6578 ntAPPRIS ALT2 TSL 5 BASIC18.85■□□□□ 0.61
Shox2P70390 Asnsd1-201ENSMUST00000027264 2442 ntAPPRIS P1 TSL 1 (best) BASIC18.85■□□□□ 0.61
Shox2P70390 Nrxn2-205ENSMUST00000113462 6667 ntAPPRIS P4 TSL 1 (best) BASIC18.85■□□□□ 0.61
Shox2P70390 Prss50-201ENSMUST00000051097 1456 ntAPPRIS P1 TSL 1 (best) BASIC18.85■□□□□ 0.61
Shox2P70390 Rasgrp2-224ENSMUST00000167240 2192 ntAPPRIS P1 TSL 5 BASIC18.85■□□□□ 0.61
Shox2P70390 Gm20604-201ENSMUST00000174651 2795 ntAPPRIS P1 TSL 2 BASIC18.85■□□□□ 0.61
Shox2P70390 Ppme1-201ENSMUST00000032963 2772 ntAPPRIS P1 TSL 1 (best) BASIC18.85■□□□□ 0.61
Shox2P70390 Gab2-201ENSMUST00000004622 6168 ntAPPRIS P3 TSL 1 (best) BASIC18.85■□□□□ 0.61
Shox2P70390 Ints6-201ENSMUST00000053959 4993 ntAPPRIS P1 TSL 1 (best) BASIC18.85■□□□□ 0.61
Shox2P70390 Prdm6-203ENSMUST00000115399 2227 ntAPPRIS ALT2 TSL 1 (best) BASIC18.85■□□□□ 0.61
Shox2P70390 Kansl1-204ENSMUST00000106972 5427 ntAPPRIS ALT2 TSL 5 BASIC18.85■□□□□ 0.61
Shox2P70390 Adcy3-202ENSMUST00000124505 4962 ntAPPRIS ALT1 TSL 1 (best) BASIC18.84■□□□□ 0.61
Shox2P70390 Mgarp-202ENSMUST00000108046 1409 ntTSL 1 (best) BASIC18.84■□□□□ 0.61
Shox2P70390 Eif4a1-213ENSMUST00000163666 1774 ntAPPRIS P1 TSL 1 (best) BASIC18.84■□□□□ 0.61
Shox2P70390 Psmd3-201ENSMUST00000017365 2148 ntAPPRIS P1 TSL 1 (best) BASIC18.84■□□□□ 0.61
Shox2P70390 Zfp580-202ENSMUST00000208570 693 ntAPPRIS ALT2 TSL 1 (best) BASIC18.84■□□□□ 0.61
Shox2P70390 4930426I24Rik-202ENSMUST00000217797 1232 ntBASIC18.84■□□□□ 0.61
Shox2P70390 Trir-201ENSMUST00000047281 902 ntAPPRIS P1 TSL 1 (best) BASIC18.84■□□□□ 0.61
Shox2P70390 Glrx2-210ENSMUST00000185362 3337 ntAPPRIS P4 TSL 1 (best) BASIC18.84■□□□□ 0.61
Shox2P70390 Fam107a-202ENSMUST00000120411 2093 ntAPPRIS P1 TSL 1 (best) BASIC18.84■□□□□ 0.61
Shox2P70390 Cdca3-201ENSMUST00000024270 1976 ntAPPRIS P1 TSL 1 (best) BASIC18.84■□□□□ 0.61
Shox2P70390 Adgrv1-211ENSMUST00000146749 1592 ntTSL 1 (best) BASIC18.84■□□□□ 0.61
Shox2P70390 Stac3-202ENSMUST00000160019 1581 ntAPPRIS P1 TSL 1 (best) BASIC18.84■□□□□ 0.61
Shox2P70390 Mtg1-201ENSMUST00000036977 1595 ntAPPRIS P1 TSL 1 (best) BASIC18.84■□□□□ 0.61
Shox2P70390 Kdm3b-201ENSMUST00000043775 6363 ntAPPRIS P1 TSL 1 (best) BASIC18.84■□□□□ 0.61
Shox2P70390 Epn1-207ENSMUST00000208634 2127 ntAPPRIS ALT2 TSL 5 BASIC18.83■□□□□ 0.61
Shox2P70390 Lysmd4-209ENSMUST00000208998 2110 ntAPPRIS P2 TSL 1 (best) BASIC18.83■□□□□ 0.61
Shox2P70390 Tigd3-201ENSMUST00000055911 2114 ntAPPRIS P1 TSL 1 (best) BASIC18.83■□□□□ 0.61
Shox2P70390 Fam189a1-201ENSMUST00000119118 4801 ntAPPRIS P1 TSL 5 BASIC18.83■□□□□ 0.61
Shox2P70390 Tmem41a-201ENSMUST00000023562 1359 ntAPPRIS P1 TSL 1 (best) BASIC18.83■□□□□ 0.61
Shox2P70390 Clasp2-204ENSMUST00000213663 2727 ntTSL 5 BASIC18.83■□□□□ 0.61
Shox2P70390 Spc24-205ENSMUST00000217382 1696 ntTSL 1 (best) BASIC18.83■□□□□ 0.61
Shox2P70390 Orai3-201ENSMUST00000061587 1996 ntAPPRIS P1 TSL 1 (best) BASIC18.83■□□□□ 0.61
Shox2P70390 Agfg2-201ENSMUST00000031736 2893 ntAPPRIS P3 TSL 1 (best) BASIC18.83■□□□□ 0.6
Shox2P70390 Sntb1-202ENSMUST00000110200 1225 ntTSL 1 (best) BASIC18.83■□□□□ 0.6
Shox2P70390 Zfp346-202ENSMUST00000159147 1146 ntTSL 5 BASIC18.83■□□□□ 0.6
Shox2P70390 Vegfb-201ENSMUST00000025914 1281 ntAPPRIS P3 TSL 1 (best) BASIC18.83■□□□□ 0.6
Retrieved 100 of 76,532 protein–RNA pairs in 18.1 ms