Protein–RNA interactions for Protein: P50431

Shmt1, Serine hydroxymethyltransferase, cytosolic, mousemouse

Predictions only

Length 478 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Shmt1P50431 Rchy1-201ENSMUST00000031345 1967 ntAPPRIS P1 TSL 1 (best) BASIC20.21■□□□□ 0.83
Shmt1P50431 Hs2st1-201ENSMUST00000043325 6177 ntAPPRIS P1 TSL 1 (best) BASIC20.21■□□□□ 0.83
Shmt1P50431 Gal3st3-201ENSMUST00000061169 2421 ntAPPRIS P1 TSL 1 (best) BASIC20.21■□□□□ 0.83
Shmt1P50431 Mroh6-201ENSMUST00000184858 2216 ntAPPRIS P1 TSL 5 BASIC20.21■□□□□ 0.83
Shmt1P50431 Ezh2-204ENSMUST00000114618 2775 ntTSL 1 (best) BASIC20.2■□□□□ 0.82
Shmt1P50431 E4f1-201ENSMUST00000056032 2574 ntAPPRIS P2 TSL 1 (best) BASIC20.2■□□□□ 0.82
Shmt1P50431 Man2c1os-201ENSMUST00000125333 1910 ntTSL 1 (best) BASIC20.2■□□□□ 0.82
Shmt1P50431 Arl10-201ENSMUST00000026988 1046 ntAPPRIS P1 TSL 1 (best) BASIC20.2■□□□□ 0.82
Shmt1P50431 Cadm1-201ENSMUST00000034581 1254 ntAPPRIS ALT1 TSL 1 (best) BASIC20.2■□□□□ 0.82
Shmt1P50431 Kcne1l-201ENSMUST00000134825 1543 ntAPPRIS P1 BASIC20.2■□□□□ 0.82
Shmt1P50431 Vps26a-201ENSMUST00000092473 2712 ntTSL 1 (best) BASIC20.2■□□□□ 0.82
Shmt1P50431 Ascl4-202ENSMUST00000170396 2016 ntAPPRIS P1 BASIC20.2■□□□□ 0.82
Shmt1P50431 Tssk2-201ENSMUST00000055374 1387 ntAPPRIS P1 BASIC20.2■□□□□ 0.82
Shmt1P50431 Bmpr1b-202ENSMUST00000098568 1910 ntAPPRIS P1 TSL 1 (best) BASIC20.19■□□□□ 0.82
Shmt1P50431 Gja3-201ENSMUST00000061614 2766 ntAPPRIS P1 TSL 1 (best) BASIC20.19■□□□□ 0.82
Shmt1P50431 Ltk-202ENSMUST00000082130 2767 ntAPPRIS ALT2 TSL 1 (best) BASIC20.19■□□□□ 0.82
Shmt1P50431 Galnt11-201ENSMUST00000045737 2552 ntAPPRIS P1 TSL 1 (best) BASIC20.19■□□□□ 0.82
Shmt1P50431 Lrfn4-201ENSMUST00000053597 3194 ntAPPRIS P1 TSL 1 (best) BASIC20.19■□□□□ 0.82
Shmt1P50431 Nfe2l3-203ENSMUST00000160133 1125 ntTSL 1 (best) BASIC20.19■□□□□ 0.82
Shmt1P50431 D830036C21Rik-201ENSMUST00000207444 453 ntTSL 3 BASIC20.19■□□□□ 0.82
Shmt1P50431 AC121965.1-201ENSMUST00000221422 861 ntTSL 1 (best) BASIC20.19■□□□□ 0.82
Shmt1P50431 Snrpc-201ENSMUST00000071006 870 ntAPPRIS P1 TSL 1 (best) BASIC20.19■□□□□ 0.82
Shmt1P50431 Sbspon-201ENSMUST00000040695 2748 ntAPPRIS P1 TSL 1 (best) BASIC20.19■□□□□ 0.82
Shmt1P50431 Matk-204ENSMUST00000120265 1618 ntAPPRIS ALT2 TSL 5 BASIC20.19■□□□□ 0.82
Shmt1P50431 Cenpb-201ENSMUST00000089510 4886 ntAPPRIS P1 BASIC20.19■□□□□ 0.82
Shmt1P50431 Gatad1-201ENSMUST00000007559 2545 ntAPPRIS P2 TSL 1 (best) BASIC20.19■□□□□ 0.82
Shmt1P50431 Six5-201ENSMUST00000049454 3007 ntAPPRIS P1 TSL 1 (best) BASIC20.19■□□□□ 0.82
Shmt1P50431 Lhx8-201ENSMUST00000177846 2076 ntTSL 1 (best) BASIC20.18■□□□□ 0.82
Shmt1P50431 Tlcd1-201ENSMUST00000092880 2700 ntAPPRIS ALT2 TSL 1 (best) BASIC20.18■□□□□ 0.82
Shmt1P50431 1810055G02Rik-201ENSMUST00000039048 1882 ntAPPRIS P1 TSL 1 (best) BASIC20.18■□□□□ 0.82
Shmt1P50431 Fgf3-201ENSMUST00000105898 2299 ntAPPRIS P1 TSL 1 (best) BASIC20.18■□□□□ 0.82
Shmt1P50431 Gm13534-201ENSMUST00000121169 513 ntBASIC20.18■□□□□ 0.82
Shmt1P50431 Tex30-212ENSMUST00000152239 1046 ntAPPRIS P1 TSL 1 (best) BASIC20.18■□□□□ 0.82
Shmt1P50431 Prcd-205ENSMUST00000178875 1227 ntTSL 5 BASIC20.18■□□□□ 0.82
Shmt1P50431 Coq9-201ENSMUST00000034234 1789 ntAPPRIS P1 TSL 1 (best) BASIC20.18■□□□□ 0.82
Shmt1P50431 Cwh43-202ENSMUST00000065543 2316 ntTSL 1 (best) BASIC20.18■□□□□ 0.82
Shmt1P50431 Slc25a4-201ENSMUST00000034049 1925 ntAPPRIS P1 TSL 1 (best) BASIC20.17■□□□□ 0.82
Shmt1P50431 Fam3c-205ENSMUST00000165576 2826 ntAPPRIS P1 TSL 1 (best) BASIC20.17■□□□□ 0.82
Shmt1P50431 Zbtb4-203ENSMUST00000108640 4067 ntAPPRIS P1 TSL 1 (best) BASIC20.17■□□□□ 0.82
Shmt1P50431 Rian-206ENSMUST00000182119 329 ntTSL 3 BASIC20.17■□□□□ 0.82
Shmt1P50431 Hoxc12-201ENSMUST00000055562 1031 ntAPPRIS P1 TSL 1 (best) BASIC20.17■□□□□ 0.82
Shmt1P50431 Sept7-201ENSMUST00000115272 2533 ntAPPRIS ALT1 TSL 5 BASIC20.17■□□□□ 0.82
Shmt1P50431 Numbl-201ENSMUST00000079258 2760 ntAPPRIS P1 TSL 1 (best) BASIC20.17■□□□□ 0.82
Shmt1P50431 D030062O11Rik-201ENSMUST00000192660 2806 ntBASIC20.17■□□□□ 0.82
Shmt1P50431 Zfp444-203ENSMUST00000108566 1648 ntAPPRIS P1 TSL 1 (best) BASIC20.16■□□□□ 0.82
Shmt1P50431 Lfng-201ENSMUST00000031555 2305 ntAPPRIS P1 TSL 1 (best) BASIC20.16■□□□□ 0.82
Shmt1P50431 Gas2l1-203ENSMUST00000109895 2530 ntAPPRIS P3 TSL 1 (best) BASIC20.16■□□□□ 0.82
Shmt1P50431 Krt24-201ENSMUST00000017255 1847 ntAPPRIS P1 TSL 1 (best) BASIC20.16■□□□□ 0.82
Shmt1P50431 E4f1-205ENSMUST00000226941 2642 ntAPPRIS ALT2 BASIC20.16■□□□□ 0.82
Shmt1P50431 Tmem54-203ENSMUST00000106064 1066 ntAPPRIS P3 TSL 1 (best) BASIC20.16■□□□□ 0.82
Shmt1P50431 Trim72-202ENSMUST00000106248 2134 ntAPPRIS P1 TSL 5 BASIC20.16■□□□□ 0.82
Shmt1P50431 1700125G02Rik-201ENSMUST00000154947 519 ntTSL 1 (best) BASIC20.16■□□□□ 0.82
Shmt1P50431 Tmem234-215ENSMUST00000173758 453 ntTSL 2 BASIC20.16■□□□□ 0.82
Shmt1P50431 Mrpl52-204ENSMUST00000199195 463 ntTSL 1 (best) BASIC20.16■□□□□ 0.82
Shmt1P50431 Nudt14-202ENSMUST00000221397 1241 ntAPPRIS P1 TSL 1 (best) BASIC20.16■□□□□ 0.82
Shmt1P50431 Senp6-201ENSMUST00000037484 5111 ntAPPRIS P3 TSL 1 (best) BASIC20.16■□□□□ 0.82
Shmt1P50431 Speg-206ENSMUST00000122266 917 ntTSL 1 (best) BASIC20.15■□□□□ 0.82
Shmt1P50431 Stx6-209ENSMUST00000195302 955 ntTSL 1 (best) BASIC20.15■□□□□ 0.82
Shmt1P50431 Spcs1-207ENSMUST00000228767 1008 ntBASIC20.15■□□□□ 0.82
Shmt1P50431 Cystm1-201ENSMUST00000050584 831 ntAPPRIS ALT2 TSL 1 (best) BASIC20.15■□□□□ 0.82
Shmt1P50431 Unc50-201ENSMUST00000027285 1414 ntAPPRIS P1 TSL 1 (best) BASIC20.15■□□□□ 0.82
Shmt1P50431 H2-Q7-201ENSMUST00000071951 1406 ntAPPRIS P2 TSL 1 (best) BASIC20.15■□□□□ 0.82
Shmt1P50431 H2-Q7-203ENSMUST00000078205 1419 ntTSL 5 BASIC20.15■□□□□ 0.82
Shmt1P50431 Adpgk-201ENSMUST00000026266 2464 ntAPPRIS ALT1 TSL 1 (best) BASIC20.15■□□□□ 0.82
Shmt1P50431 Sept7-202ENSMUST00000165594 2516 ntAPPRIS P2 TSL 5 BASIC20.15■□□□□ 0.82
Shmt1P50431 Tmem164-206ENSMUST00000112896 5224 ntAPPRIS P1 TSL 1 (best) BASIC20.15■□□□□ 0.82
Shmt1P50431 Plekha1-211ENSMUST00000151119 2397 ntTSL 1 (best) BASIC20.14■□□□□ 0.82
Shmt1P50431 Pou3f3-201ENSMUST00000054883 7409 ntAPPRIS P1 BASIC20.14■□□□□ 0.81
Shmt1P50431 Slc35d3-201ENSMUST00000059805 2630 ntAPPRIS P1 TSL 1 (best) BASIC20.14■□□□□ 0.81
Shmt1P50431 Nhlh1-201ENSMUST00000059794 2464 ntAPPRIS P1 TSL 1 (best) BASIC20.14■□□□□ 0.81
Shmt1P50431 Gdf11-201ENSMUST00000026408 4062 ntAPPRIS P1 TSL 1 (best) BASIC20.14■□□□□ 0.81
Shmt1P50431 Zdhhc5-201ENSMUST00000035840 4706 ntAPPRIS P1 TSL 1 (best) BASIC20.14■□□□□ 0.81
Shmt1P50431 Pcmtd1-201ENSMUST00000061280 5232 ntAPPRIS P1 TSL 1 (best) BASIC20.13■□□□□ 0.81
Shmt1P50431 Notumos-201ENSMUST00000151998 2659 ntBASIC20.13■□□□□ 0.81
Shmt1P50431 Fgfr3-202ENSMUST00000087820 2630 ntAPPRIS ALT2 TSL 5 BASIC20.13■□□□□ 0.81
Shmt1P50431 Slc35a2-203ENSMUST00000115663 1527 ntAPPRIS P4 TSL 2 BASIC20.13■□□□□ 0.81
Shmt1P50431 Hcn4-201ENSMUST00000034889 6118 ntAPPRIS P1 TSL 1 (best) BASIC20.13■□□□□ 0.81
Shmt1P50431 Bend7-204ENSMUST00000184139 2251 ntAPPRIS ALT2 TSL 1 (best) BASIC20.13■□□□□ 0.81
Shmt1P50431 AB124611-202ENSMUST00000086361 1310 ntAPPRIS ALT2 TSL 1 (best) BASIC20.13■□□□□ 0.81
Shmt1P50431 Gm11627-201ENSMUST00000107080 585 ntAPPRIS P1 TSL 1 (best) BASIC20.13■□□□□ 0.81
Shmt1P50431 Zfp444-202ENSMUST00000108565 849 ntTSL 3 BASIC20.13■□□□□ 0.81
Shmt1P50431 Mpc1-208ENSMUST00000155364 958 ntAPPRIS P1 TSL 2 BASIC20.13■□□□□ 0.81
Shmt1P50431 Gm27032-201ENSMUST00000183124 1116 ntBASIC20.13■□□□□ 0.81
Shmt1P50431 4930413G21Rik-201ENSMUST00000205998 993 ntBASIC20.13■□□□□ 0.81
Shmt1P50431 A730056A06Rik-202ENSMUST00000206959 526 ntTSL 3 BASIC20.13■□□□□ 0.81
Shmt1P50431 Tmem53-201ENSMUST00000062824 991 ntAPPRIS P1 TSL 1 (best) BASIC20.13■□□□□ 0.81
Shmt1P50431 Zfp3-201ENSMUST00000060444 2061 ntAPPRIS P1 TSL 1 (best) BASIC20.13■□□□□ 0.81
Shmt1P50431 Hoxd13-201ENSMUST00000001872 2483 ntAPPRIS P1 TSL 1 (best) BASIC20.13■□□□□ 0.81
Shmt1P50431 Wtap-204ENSMUST00000159986 3187 ntTSL 1 (best) BASIC20.13■□□□□ 0.81
Shmt1P50431 D16Ertd472e-202ENSMUST00000114219 1576 ntAPPRIS P1 TSL 1 (best) BASIC20.12■□□□□ 0.81
Shmt1P50431 Scn1b-203ENSMUST00000211945 1501 ntAPPRIS P1 TSL 5 BASIC20.12■□□□□ 0.81
Shmt1P50431 Runx1-203ENSMUST00000168195 1985 ntAPPRIS ALT2 TSL 1 (best) BASIC20.12■□□□□ 0.81
Shmt1P50431 Gm15155-201ENSMUST00000112542 1009 ntAPPRIS P1 TSL 1 (best) BASIC20.12■□□□□ 0.81
Shmt1P50431 Gm45121-201ENSMUST00000205396 1153 ntTSL 5 BASIC20.12■□□□□ 0.81
Shmt1P50431 C230062I16Rik-202ENSMUST00000207746 1022 ntTSL 1 (best) BASIC20.12■□□□□ 0.81
Shmt1P50431 Gm44899-202ENSMUST00000209433 511 ntTSL 5 BASIC20.12■□□□□ 0.81
Shmt1P50431 Fam228b-205ENSMUST00000218575 1281 ntAPPRIS ALT2 TSL 2 BASIC20.12■□□□□ 0.81
Shmt1P50431 Psmb5-201ENSMUST00000022803 899 ntAPPRIS P1 TSL 1 (best) BASIC20.12■□□□□ 0.81
Shmt1P50431 Sohlh1-201ENSMUST00000076989 1289 ntAPPRIS P1 TSL 1 (best) BASIC20.12■□□□□ 0.81
Shmt1P50431 Arhgap44-202ENSMUST00000093001 2256 ntTSL 2 BASIC20.12■□□□□ 0.81
Retrieved 100 of 76,532 protein–RNA pairs in 17.7 ms