Protein–RNA interactions for Protein: P13297

Msx1, Homeobox protein MSX-1, mousemouse

Predictions only

Length 303 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Msx1P13297 Agtpbp1-222ENSMUST00000171606 3037 ntTSL 1 (best) BASIC18.04■□□□□ 0.48
Msx1P13297 2310034G01Rik-201ENSMUST00000189008 1373 ntAPPRIS P1 TSL 5 BASIC18.04■□□□□ 0.48
Msx1P13297 Moap1-201ENSMUST00000173760 1312 ntAPPRIS P1 TSL 2 BASIC18.03■□□□□ 0.48
Msx1P13297 1700095J03Rik-201ENSMUST00000143715 1808 ntTSL 1 (best) BASIC18.03■□□□□ 0.48
Msx1P13297 Hira-201ENSMUST00000004222 4218 ntAPPRIS P1 TSL 1 (best) BASIC18.03■□□□□ 0.48
Msx1P13297 Gm27801-201ENSMUST00000184174 223 ntBASIC18.03■□□□□ 0.48
Msx1P13297 Rabac1-203ENSMUST00000205871 986 ntTSL 1 (best) BASIC18.03■□□□□ 0.48
Msx1P13297 Cnih2-201ENSMUST00000025805 1237 ntAPPRIS P1 TSL 1 (best) BASIC18.03■□□□□ 0.48
Msx1P13297 Picalm-215ENSMUST00000209068 3511 ntAPPRIS ALT2 TSL 5 BASIC18.03■□□□□ 0.48
Msx1P13297 1810010K12Rik-201ENSMUST00000070378 1324 ntBASIC18.02■□□□□ 0.48
Msx1P13297 Cbfb-201ENSMUST00000052209 2883 ntAPPRIS P3 TSL 1 (best) BASIC18.02■□□□□ 0.48
Msx1P13297 Rab3il1-201ENSMUST00000113161 2225 ntAPPRIS P3 TSL 5 BASIC18.02■□□□□ 0.48
Msx1P13297 Npm3-ps1-201ENSMUST00000119728 528 ntBASIC18.02■□□□□ 0.48
Msx1P13297 Lmo1-201ENSMUST00000036992 1282 ntAPPRIS P3 TSL 1 (best) BASIC18.02■□□□□ 0.48
Msx1P13297 Npm3-201ENSMUST00000070215 888 ntAPPRIS P1 TSL 1 (best) BASIC18.02■□□□□ 0.48
Msx1P13297 Ube2h-202ENSMUST00000102993 4657 ntAPPRIS P1 TSL 1 (best) BASIC18.02■□□□□ 0.48
Msx1P13297 Vegfa-207ENSMUST00000142351 1973 ntAPPRIS ALT2 TSL 1 (best) BASIC18.02■□□□□ 0.47
Msx1P13297 Ltbp3-201ENSMUST00000081496 5190 ntAPPRIS P1 TSL 5 BASIC18.02■□□□□ 0.47
Msx1P13297 Ptar1-201ENSMUST00000099560 2064 ntAPPRIS P1 TSL 5 BASIC18.02■□□□□ 0.47
Msx1P13297 Man2c1os-201ENSMUST00000125333 1910 ntTSL 1 (best) BASIC18.02■□□□□ 0.47
Msx1P13297 Zfyve9-202ENSMUST00000106657 6459 ntAPPRIS P2 TSL 5 BASIC18.02■□□□□ 0.47
Msx1P13297 Brd1-201ENSMUST00000088911 4702 ntTSL 1 (best) BASIC18.01■□□□□ 0.47
Msx1P13297 Ddah2-201ENSMUST00000007255 1342 ntAPPRIS P1 TSL 1 (best) BASIC18.01■□□□□ 0.47
Msx1P13297 Hunk-201ENSMUST00000065856 5009 ntAPPRIS P1 TSL 1 (best) BASIC18.01■□□□□ 0.47
Msx1P13297 Ddost-201ENSMUST00000030538 2120 ntAPPRIS P1 TSL 1 (best) BASIC18.01■□□□□ 0.47
Msx1P13297 Rcan3-201ENSMUST00000030606 5111 ntAPPRIS P1 TSL 1 (best) BASIC18.01■□□□□ 0.47
Msx1P13297 Wtap-204ENSMUST00000159986 3187 ntTSL 1 (best) BASIC18.01■□□□□ 0.47
Msx1P13297 Cmc1-201ENSMUST00000044220 1169 ntAPPRIS P1 TSL 1 (best) BASIC18.01■□□□□ 0.47
Msx1P13297 Nfe2-201ENSMUST00000075192 1697 ntAPPRIS P1 TSL 1 (best) BASIC18.01■□□□□ 0.47
Msx1P13297 Stac3-201ENSMUST00000035839 1790 ntAPPRIS P1 TSL 1 (best) BASIC18.01■□□□□ 0.47
Msx1P13297 Ssbp3-201ENSMUST00000030367 3195 ntAPPRIS P2 TSL 1 (best) BASIC18.01■□□□□ 0.47
Msx1P13297 Cnr1-201ENSMUST00000057188 5807 ntAPPRIS P1 TSL 1 (best) BASIC18.01■□□□□ 0.47
Msx1P13297 Baiap2-203ENSMUST00000103021 3398 ntAPPRIS ALT2 TSL 1 (best) BASIC18■□□□□ 0.47
Msx1P13297 1700017B05Rik-204ENSMUST00000215298 1023 ntAPPRIS ALT2 TSL 1 (best) BASIC18■□□□□ 0.47
Msx1P13297 1700028I16Rik-201ENSMUST00000076984 1048 ntTSL 5 BASIC18■□□□□ 0.47
Msx1P13297 Espn-205ENSMUST00000084114 1645 ntTSL 1 (best) BASIC18■□□□□ 0.47
Msx1P13297 Klhl8-201ENSMUST00000031254 3193 ntAPPRIS P1 TSL 1 (best) BASIC18■□□□□ 0.47
Msx1P13297 Gpn2-201ENSMUST00000030661 1367 ntAPPRIS P1 TSL 1 (best) BASIC18■□□□□ 0.47
Msx1P13297 Diablo-203ENSMUST00000111587 1576 ntAPPRIS P1 TSL 1 (best) BASIC18■□□□□ 0.47
Msx1P13297 Cracr2b-201ENSMUST00000053670 1698 ntAPPRIS P2 TSL 1 (best) BASIC17.99■□□□□ 0.47
Msx1P13297 Prss32-201ENSMUST00000061725 1689 ntAPPRIS P1 TSL 1 (best) BASIC17.99■□□□□ 0.47
Msx1P13297 Cnbp-208ENSMUST00000204653 2175 ntTSL 1 (best) BASIC17.99■□□□□ 0.47
Msx1P13297 Zfp710-204ENSMUST00000206039 2194 ntAPPRIS ALT2 TSL 1 (best) BASIC17.99■□□□□ 0.47
Msx1P13297 Cnbp-201ENSMUST00000032138 2178 ntTSL 1 (best) BASIC17.99■□□□□ 0.47
Msx1P13297 Rnpep-201ENSMUST00000074357 2171 ntTSL 1 (best) BASIC17.99■□□□□ 0.47
Msx1P13297 Tmem54-203ENSMUST00000106064 1066 ntAPPRIS P3 TSL 1 (best) BASIC17.99■□□□□ 0.47
Msx1P13297 Tfam-203ENSMUST00000121685 899 ntAPPRIS ALT2 TSL 2 BASIC17.99■□□□□ 0.47
Msx1P13297 Snhg20-202ENSMUST00000149822 593 ntTSL 1 (best) BASIC17.99■□□□□ 0.47
Msx1P13297 Gm22240-201ENSMUST00000175225 82 ntBASIC17.99■□□□□ 0.47
Msx1P13297 Gm42555-201ENSMUST00000199304 1039 ntBASIC17.99■□□□□ 0.47
Msx1P13297 Fxyd1-215ENSMUST00000206474 572 ntAPPRIS P1 TSL 1 (best) BASIC17.99■□□□□ 0.47
Msx1P13297 AC154266.1-201ENSMUST00000223190 503 ntBASIC17.99■□□□□ 0.47
Msx1P13297 Ptrh1-201ENSMUST00000066352 952 ntAPPRIS P1 TSL 1 (best) BASIC17.99■□□□□ 0.47
Msx1P13297 Purg-201ENSMUST00000070340 1064 ntAPPRIS P1 BASIC17.99■□□□□ 0.47
Msx1P13297 Cldn3-201ENSMUST00000094245 1259 ntAPPRIS P1 BASIC17.99■□□□□ 0.47
Msx1P13297 Cers2-201ENSMUST00000015858 2216 ntAPPRIS P1 TSL 1 (best) BASIC17.99■□□□□ 0.47
Msx1P13297 Hnrnpf-202ENSMUST00000163168 2401 ntAPPRIS P1 TSL 1 (best) BASIC17.99■□□□□ 0.47
Msx1P13297 Siah2-201ENSMUST00000070368 2511 ntAPPRIS P1 TSL 1 (best) BASIC17.99■□□□□ 0.47
Msx1P13297 Mknk2-205ENSMUST00000200082 3439 ntAPPRIS P2 TSL 1 (best) BASIC17.98■□□□□ 0.47
Msx1P13297 Galnt11-201ENSMUST00000045737 2552 ntAPPRIS P1 TSL 1 (best) BASIC17.98■□□□□ 0.47
Msx1P13297 Mgat1-213ENSMUST00000167400 3151 ntAPPRIS P1 TSL 5 BASIC17.98■□□□□ 0.47
Msx1P13297 Mroh6-201ENSMUST00000184858 2216 ntAPPRIS P1 TSL 5 BASIC17.98■□□□□ 0.47
Msx1P13297 Cep170b-202ENSMUST00000101018 6641 ntAPPRIS P1 TSL 1 (best) BASIC17.98■□□□□ 0.47
Msx1P13297 Znrf1-204ENSMUST00000171182 5466 ntTSL 3 BASIC17.98■□□□□ 0.47
Msx1P13297 Rhno1-202ENSMUST00000112151 1108 ntAPPRIS P1 TSL 1 (best) BASIC17.98■□□□□ 0.47
Msx1P13297 Rpusd3-202ENSMUST00000113092 1269 ntAPPRIS P2 TSL 1 (best) BASIC17.98■□□□□ 0.47
Msx1P13297 2510002D24Rik-202ENSMUST00000123146 361 ntTSL 1 (best) BASIC17.98■□□□□ 0.47
Msx1P13297 Gm20760-201ENSMUST00000179197 648 ntBASIC17.98■□□□□ 0.47
Msx1P13297 D130020L05Rik-202ENSMUST00000220889 769 ntTSL 3 BASIC17.98■□□□□ 0.47
Msx1P13297 AC175538.2-202ENSMUST00000224997 1057 ntAPPRIS P1 BASIC17.98■□□□□ 0.47
Msx1P13297 Dtymk-201ENSMUST00000027503 1003 ntAPPRIS P1 TSL 1 (best) BASIC17.98■□□□□ 0.47
Msx1P13297 Mvb12a-201ENSMUST00000034272 1062 ntAPPRIS P1 TSL 1 (best) BASIC17.98■□□□□ 0.47
Msx1P13297 Med30-201ENSMUST00000037115 1007 ntAPPRIS P1 TSL 1 (best) BASIC17.98■□□□□ 0.47
Msx1P13297 Gm4968-201ENSMUST00000071458 858 ntBASIC17.98■□□□□ 0.47
Msx1P13297 Pus1-201ENSMUST00000031481 1563 ntAPPRIS ALT2 TSL 1 (best) BASIC17.98■□□□□ 0.47
Msx1P13297 Vav3-201ENSMUST00000046864 5019 ntAPPRIS P1 TSL 1 (best) BASIC17.98■□□□□ 0.47
Msx1P13297 Mtus2-205ENSMUST00000110515 1792 ntAPPRIS P1 TSL 1 (best) BASIC17.98■□□□□ 0.47
Msx1P13297 Cyp2r1-207ENSMUST00000211506 1887 ntTSL 5 BASIC17.98■□□□□ 0.47
Msx1P13297 Eif1-201ENSMUST00000049385 1322 ntAPPRIS P1 TSL 1 (best) BASIC17.98■□□□□ 0.47
Msx1P13297 Sos1-201ENSMUST00000068714 8919 ntAPPRIS P1 TSL 2 BASIC17.97■□□□□ 0.47
Msx1P13297 Stx2-202ENSMUST00000100680 2769 ntAPPRIS ALT2 TSL 1 (best) BASIC17.97■□□□□ 0.47
Msx1P13297 Cerk-201ENSMUST00000044332 4518 ntAPPRIS P1 TSL 1 (best) BASIC17.97■□□□□ 0.47
Msx1P13297 Cyp4f15-201ENSMUST00000008801 2095 ntAPPRIS ALT2 TSL 1 (best) BASIC17.97■□□□□ 0.47
Msx1P13297 Barx2-201ENSMUST00000116615 1968 ntAPPRIS P1 TSL 1 (best) BASIC17.97■□□□□ 0.47
Msx1P13297 Eif2b4-203ENSMUST00000166769 1878 ntTSL 5 BASIC17.97■□□□□ 0.47
Msx1P13297 Ahsa2-201ENSMUST00000020529 3023 ntAPPRIS P3 TSL 1 (best) BASIC17.97■□□□□ 0.47
Msx1P13297 Rela-201ENSMUST00000025867 2716 ntAPPRIS P1 TSL 1 (best) BASIC17.97■□□□□ 0.47
Msx1P13297 B130046B21Rik-201ENSMUST00000181510 2216 ntTSL 1 (best) BASIC17.97■□□□□ 0.47
Msx1P13297 E130307A14Rik-208ENSMUST00000145971 830 ntTSL 3 BASIC17.97■□□□□ 0.47
Msx1P13297 Rps2-ps3-201ENSMUST00000213102 832 ntBASIC17.97■□□□□ 0.47
Msx1P13297 Fam228b-205ENSMUST00000218575 1281 ntAPPRIS ALT2 TSL 2 BASIC17.97■□□□□ 0.47
Msx1P13297 Fbxo27-203ENSMUST00000108281 1948 ntAPPRIS ALT2 TSL 1 (best) BASIC17.97■□□□□ 0.47
Msx1P13297 M5C1000I18Rik-202ENSMUST00000186205 1414 ntTSL 1 (best) BASIC17.97■□□□□ 0.47
Msx1P13297 Sept4-206ENSMUST00000122067 1303 ntTSL 1 (best) BASIC17.97■□□□□ 0.47
Msx1P13297 Mgll-205ENSMUST00000150180 1312 ntTSL 1 (best) BASIC17.97■□□□□ 0.47
Msx1P13297 Kndc1-202ENSMUST00000121839 2210 ntTSL 2 BASIC17.96■□□□□ 0.47
Msx1P13297 Flot2-203ENSMUST00000100784 2699 ntTSL 1 (best) BASIC17.96■□□□□ 0.47
Msx1P13297 Fmnl2-204ENSMUST00000127122 5508 ntTSL 5 BASIC17.96■□□□□ 0.47
Msx1P13297 Golph3-202ENSMUST00000226517 2359 ntBASIC17.96■□□□□ 0.47
Msx1P13297 1700030C12Rik-201ENSMUST00000101462 858 ntTSL 5 BASIC17.96■□□□□ 0.47
Retrieved 100 of 76,532 protein–RNA pairs in 80.4 ms