Protein–RNA interactions for Protein: O35493

Clk4, Dual specificity protein kinase CLK4, mousemouse

Predictions only

Length 481 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Clk4O35493 Tmem164-201ENSMUST00000087333 5149 ntAPPRIS P1 TSL 1 (best) BASIC18.21■□□□□ 0.51
Clk4O35493 Rasgef1a-201ENSMUST00000164960 3284 ntAPPRIS ALT2 TSL 5 BASIC18.21■□□□□ 0.51
Clk4O35493 Picalm-215ENSMUST00000209068 3511 ntAPPRIS ALT2 TSL 5 BASIC18.21■□□□□ 0.51
Clk4O35493 Miga1-201ENSMUST00000068243 2689 ntTSL 1 (best) BASIC18.21■□□□□ 0.51
Clk4O35493 Ebf3-201ENSMUST00000033378 4838 ntAPPRIS P3 TSL 1 (best) BASIC18.21■□□□□ 0.51
Clk4O35493 Magi2-203ENSMUST00000115267 4478 ntTSL 1 (best) BASIC18.21■□□□□ 0.51
Clk4O35493 Kcnn4-201ENSMUST00000171904 1990 ntAPPRIS P1 TSL 1 (best) BASIC18.21■□□□□ 0.5
Clk4O35493 Ccdc84-201ENSMUST00000053286 1725 ntAPPRIS P1 TSL 1 (best) BASIC18.2■□□□□ 0.5
Clk4O35493 Foxf2-201ENSMUST00000042054 2363 ntAPPRIS P1 TSL 1 (best) BASIC18.2■□□□□ 0.5
Clk4O35493 Gatad1-201ENSMUST00000007559 2545 ntAPPRIS P2 TSL 1 (best) BASIC18.2■□□□□ 0.5
Clk4O35493 Sys1-202ENSMUST00000109352 2001 ntAPPRIS P1 TSL 5 BASIC18.2■□□□□ 0.5
Clk4O35493 Mycl-202ENSMUST00000106252 3293 ntAPPRIS P1 TSL 1 (best) BASIC18.2■□□□□ 0.5
Clk4O35493 Spg7-211ENSMUST00000153285 2481 ntAPPRIS ALT2 TSL 5 BASIC18.2■□□□□ 0.5
Clk4O35493 6820408C15Rik-201ENSMUST00000039961 1684 ntAPPRIS P1 TSL 1 (best) BASIC18.2■□□□□ 0.5
Clk4O35493 Sumo3-209ENSMUST00000174113 512 ntAPPRIS P1 TSL 2 BASIC18.2■□□□□ 0.5
Clk4O35493 Syncrip-205ENSMUST00000173801 2944 ntAPPRIS ALT1 TSL 1 (best) BASIC18.2■□□□□ 0.5
Clk4O35493 Vegfa-207ENSMUST00000142351 1973 ntAPPRIS ALT2 TSL 1 (best) BASIC18.2■□□□□ 0.5
Clk4O35493 Klc1-204ENSMUST00000122300 2268 ntTSL 1 (best) BASIC18.2■□□□□ 0.5
Clk4O35493 Sept4-206ENSMUST00000122067 1303 ntTSL 1 (best) BASIC18.2■□□□□ 0.5
Clk4O35493 Mtfr1l-201ENSMUST00000102550 2025 ntAPPRIS P1 TSL 1 (best) BASIC18.2■□□□□ 0.5
Clk4O35493 Dnajb11-201ENSMUST00000004574 1927 ntAPPRIS P1 TSL 1 (best) BASIC18.19■□□□□ 0.5
Clk4O35493 Kctd20-204ENSMUST00000122163 2423 ntAPPRIS P1 TSL 5 BASIC18.19■□□□□ 0.5
Clk4O35493 AV026068-208ENSMUST00000189098 286 ntTSL 5 BASIC18.19■□□□□ 0.5
Clk4O35493 0610010K14Rik-202ENSMUST00000021181 779 ntTSL 1 (best) BASIC18.19■□□□□ 0.5
Clk4O35493 Nsmf-204ENSMUST00000102931 2830 ntTSL 5 BASIC18.19■□□□□ 0.5
Clk4O35493 D030056L22Rik-201ENSMUST00000055792 1631 ntAPPRIS P2 TSL 1 (best) BASIC18.19■□□□□ 0.5
Clk4O35493 Cox18-202ENSMUST00000118816 1307 ntAPPRIS ALT2 TSL 1 (best) BASIC18.19■□□□□ 0.5
Clk4O35493 0610038B21Rik-202ENSMUST00000184762 1524 ntBASIC18.18■□□□□ 0.5
Clk4O35493 Ripk2-201ENSMUST00000037035 2692 ntAPPRIS P1 TSL 1 (best) BASIC18.18■□□□□ 0.5
Clk4O35493 Sae1-201ENSMUST00000094815 1875 ntAPPRIS P1 TSL 1 (best) BASIC18.18■□□□□ 0.5
Clk4O35493 Pink1-201ENSMUST00000030536 2375 ntAPPRIS P2 TSL 1 (best) BASIC18.18■□□□□ 0.5
Clk4O35493 Fbxo27-203ENSMUST00000108281 1948 ntAPPRIS ALT2 TSL 1 (best) BASIC18.18■□□□□ 0.5
Clk4O35493 M5C1000I18Rik-202ENSMUST00000186205 1414 ntTSL 1 (best) BASIC18.18■□□□□ 0.5
Clk4O35493 Traf3-203ENSMUST00000117269 6972 ntTSL 1 (best) BASIC18.18■□□□□ 0.5
Clk4O35493 Slc9a5-201ENSMUST00000073149 3499 ntAPPRIS P1 TSL 1 (best) BASIC18.18■□□□□ 0.5
Clk4O35493 AC122828.1-201ENSMUST00000220785 489 ntTSL 3 BASIC18.18■□□□□ 0.5
Clk4O35493 Sdf2l1-201ENSMUST00000023453 1108 ntAPPRIS P1 TSL 1 (best) BASIC18.18■□□□□ 0.5
Clk4O35493 Gm10493-201ENSMUST00000097270 612 ntBASIC18.18■□□□□ 0.5
Clk4O35493 Baiap2-202ENSMUST00000075180 3518 ntAPPRIS ALT2 TSL 1 (best) BASIC18.18■□□□□ 0.5
Clk4O35493 Paics-203ENSMUST00000120912 2345 ntAPPRIS P1 TSL 1 (best) BASIC18.18■□□□□ 0.5
Clk4O35493 Pde7a-202ENSMUST00000099195 6298 ntAPPRIS ALT1 TSL 1 (best) BASIC18.18■□□□□ 0.5
Clk4O35493 Rgl2-201ENSMUST00000047503 3252 ntAPPRIS P1 TSL 1 (best) BASIC18.18■□□□□ 0.5
Clk4O35493 Cd248-201ENSMUST00000070630 2560 ntAPPRIS P1 BASIC18.18■□□□□ 0.5
Clk4O35493 Meis3-201ENSMUST00000002495 1731 ntAPPRIS P1 TSL 1 (best) BASIC18.18■□□□□ 0.5
Clk4O35493 Zfpm1-201ENSMUST00000054052 3390 ntAPPRIS P1 TSL 1 (best) BASIC18.17■□□□□ 0.5
Clk4O35493 Ung-202ENSMUST00000102584 2136 ntAPPRIS P3 TSL 1 (best) BASIC18.17■□□□□ 0.5
Clk4O35493 Gramd1a-202ENSMUST00000085636 2543 ntAPPRIS ALT2 TSL 5 BASIC18.17■□□□□ 0.5
Clk4O35493 Tmem171-201ENSMUST00000064347 1161 ntAPPRIS P1 TSL 1 (best) BASIC18.17■□□□□ 0.5
Clk4O35493 Tspan17-202ENSMUST00000099503 822 ntAPPRIS ALT1 TSL 5 BASIC18.17■□□□□ 0.5
Clk4O35493 Cyp2r1-207ENSMUST00000211506 1887 ntTSL 5 BASIC18.17■□□□□ 0.5
Clk4O35493 Pard3-219ENSMUST00000162309 5659 ntAPPRIS P3 TSL 1 (best) BASIC18.17■□□□□ 0.5
Clk4O35493 Gm45015-201ENSMUST00000207943 1364 ntAPPRIS P1 TSL 5 BASIC18.17■□□□□ 0.5
Clk4O35493 Stk11-201ENSMUST00000003152 2566 ntAPPRIS P3 TSL 1 (best) BASIC18.16■□□□□ 0.5
Clk4O35493 Cacul1-203ENSMUST00000166712 5700 ntAPPRIS ALT2 TSL 5 BASIC18.16■□□□□ 0.5
Clk4O35493 Wnk2-204ENSMUST00000110096 6534 ntAPPRIS ALT2 TSL 5 BASIC18.16■□□□□ 0.5
Clk4O35493 Hnrnph3-202ENSMUST00000118898 2168 ntAPPRIS ALT1 TSL 5 BASIC18.16■□□□□ 0.5
Clk4O35493 Tlcd1-202ENSMUST00000098545 2897 ntTSL 1 (best) BASIC18.16■□□□□ 0.5
Clk4O35493 Apoe-205ENSMUST00000173739 1221 ntAPPRIS P1 TSL 1 (best) BASIC18.16■□□□□ 0.5
Clk4O35493 Apoe-209ENSMUST00000174355 1104 ntAPPRIS P1 TSL 5 BASIC18.16■□□□□ 0.5
Clk4O35493 Apoe-201ENSMUST00000003066 1128 ntAPPRIS P1 TSL 5 BASIC18.16■□□□□ 0.5
Clk4O35493 H2-Ke6-201ENSMUST00000045467 965 ntAPPRIS P1 TSL 1 (best) BASIC18.16■□□□□ 0.5
Clk4O35493 Krtap5-3-201ENSMUST00000084414 1074 ntAPPRIS ALT2 TSL 5 BASIC18.16■□□□□ 0.5
Clk4O35493 Jph1-201ENSMUST00000038382 4809 ntAPPRIS P1 TSL 1 (best) BASIC18.16■□□□□ 0.5
Clk4O35493 Qrich1-206ENSMUST00000193258 2291 ntTSL 2 BASIC18.16■□□□□ 0.5
Clk4O35493 Epc2-201ENSMUST00000092123 4697 ntAPPRIS P1 TSL 1 (best) BASIC18.16■□□□□ 0.5
Clk4O35493 Tsen54-202ENSMUST00000106481 1862 ntAPPRIS ALT2 TSL 1 (best) BASIC18.16■□□□□ 0.5
Clk4O35493 Gabbr1-201ENSMUST00000025338 5248 ntAPPRIS P1 TSL 1 (best) BASIC18.16■□□□□ 0.5
Clk4O35493 Nat14-204ENSMUST00000207687 1415 ntAPPRIS P1 TSL 1 (best) BASIC18.15■□□□□ 0.5
Clk4O35493 Rab3il1-201ENSMUST00000113161 2225 ntAPPRIS P3 TSL 5 BASIC18.15■□□□□ 0.5
Clk4O35493 Sec24b-201ENSMUST00000001079 5128 ntAPPRIS P1 TSL 1 (best) BASIC18.15■□□□□ 0.5
Clk4O35493 Wdr41-202ENSMUST00000159647 2289 ntTSL 5 BASIC18.15■□□□□ 0.5
Clk4O35493 Wdr41-206ENSMUST00000167155 2289 ntTSL 1 (best) BASIC18.15■□□□□ 0.5
Clk4O35493 2310035C23Rik-202ENSMUST00000086721 5414 ntAPPRIS ALT2 TSL 5 BASIC18.15■□□□□ 0.5
Clk4O35493 Chpt1-203ENSMUST00000117440 4863 ntAPPRIS ALT2 TSL 5 BASIC18.15■□□□□ 0.5
Clk4O35493 E130218I03Rik-201ENSMUST00000122952 943 ntAPPRIS P1 TSL 1 (best) BASIC18.15■□□□□ 0.5
Clk4O35493 Gm18284-201ENSMUST00000172604 624 ntBASIC18.15■□□□□ 0.5
Clk4O35493 Stum-202ENSMUST00000179826 601 ntAPPRIS ALT1 TSL 5 BASIC18.15■□□□□ 0.5
Clk4O35493 Rras-201ENSMUST00000044111 995 ntAPPRIS P1 TSL 1 (best) BASIC18.15■□□□□ 0.5
Clk4O35493 Mrpl39-201ENSMUST00000116584 2294 ntAPPRIS P1 TSL 1 (best) BASIC18.15■□□□□ 0.5
Clk4O35493 Sh2b3-203ENSMUST00000118580 2393 ntAPPRIS ALT2 TSL 2 BASIC18.15■□□□□ 0.5
Clk4O35493 Klhl5-204ENSMUST00000204097 3149 ntTSL 1 (best) BASIC18.14■□□□□ 0.5
Clk4O35493 Fyn-204ENSMUST00000126486 2495 ntTSL 1 (best) BASIC18.14■□□□□ 0.5
Clk4O35493 Mreg-201ENSMUST00000048860 2284 ntAPPRIS P1 TSL 1 (best) BASIC18.14■□□□□ 0.49
Clk4O35493 Vapa-201ENSMUST00000024897 1640 ntAPPRIS P1 TSL 1 (best) BASIC18.14■□□□□ 0.49
Clk4O35493 Gm20421-201ENSMUST00000153344 672 ntTSL 3 BASIC18.14■□□□□ 0.49
Clk4O35493 Gm37564-201ENSMUST00000195000 330 ntTSL 5 BASIC18.14■□□□□ 0.49
Clk4O35493 Rasl10b-201ENSMUST00000021022 996 ntAPPRIS P1 TSL 1 (best) BASIC18.14■□□□□ 0.49
Clk4O35493 Alkbh5-201ENSMUST00000044250 5730 ntAPPRIS P1 TSL 1 (best) BASIC18.14■□□□□ 0.49
Clk4O35493 Gm10129-202ENSMUST00000193100 1316 ntBASIC18.14■□□□□ 0.49
Clk4O35493 Siah1b-201ENSMUST00000037928 1783 ntAPPRIS P1 TSL 1 (best) BASIC18.14■□□□□ 0.49
Clk4O35493 AC154231.1-201ENSMUST00000220564 2175 ntBASIC18.14■□□□□ 0.49
Clk4O35493 Tmem114-201ENSMUST00000023400 1406 ntAPPRIS P1 TSL 1 (best) BASIC18.14■□□□□ 0.49
Clk4O35493 Zfp771-201ENSMUST00000052509 1484 ntAPPRIS P1 TSL 1 (best) BASIC18.14■□□□□ 0.49
Clk4O35493 Epdr1-201ENSMUST00000002885 2363 ntAPPRIS P1 TSL 1 (best) BASIC18.13■□□□□ 0.49
Clk4O35493 Memo1-201ENSMUST00000078459 1513 ntAPPRIS P1 TSL 1 (best) BASIC18.13■□□□□ 0.49
Clk4O35493 Wipi2-202ENSMUST00000110778 1959 ntAPPRIS P1 TSL 5 BASIC18.13■□□□□ 0.49
Clk4O35493 Tnpo2-207ENSMUST00000211601 2941 ntTSL 1 (best) BASIC18.13■□□□□ 0.49
Clk4O35493 Pus1-201ENSMUST00000031481 1563 ntAPPRIS ALT2 TSL 1 (best) BASIC18.13■□□□□ 0.49
Clk4O35493 Ssc4d-204ENSMUST00000111153 2745 ntAPPRIS P1 TSL 5 BASIC18.13■□□□□ 0.49
Clk4O35493 Mettl26-205ENSMUST00000169308 1026 ntTSL 2 BASIC18.13■□□□□ 0.49
Retrieved 100 of 76,532 protein–RNA pairs in 15.3 ms