Protein–RNA interactions for Protein: Q9CU62

Smc1a, Structural maintenance of chromosomes protein 1A, mousemouse

Known RBP Predictions only

Length 1,233 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Smc1aQ9CU62 Cadm1-201ENSMUST00000034581 1254 ntAPPRIS ALT1 TSL 1 (best) BASIC21.26■□□□□ 0.99
Smc1aQ9CU62 Dgcr6-209ENSMUST00000155387 1415 ntTSL 3 BASIC21.26■□□□□ 0.99
Smc1aQ9CU62 Ankle1-201ENSMUST00000119976 2136 ntAPPRIS P3 TSL 1 (best) BASIC21.26■□□□□ 0.99
Smc1aQ9CU62 Zfp385b-204ENSMUST00000111831 2734 ntAPPRIS P3 TSL 1 (best) BASIC21.25■□□□□ 0.99
Smc1aQ9CU62 Gramd1a-201ENSMUST00000001280 2713 ntAPPRIS P2 TSL 1 (best) BASIC21.25■□□□□ 0.99
Smc1aQ9CU62 Espn-210ENSMUST00000105656 1593 ntTSL 5 BASIC21.25■□□□□ 0.99
Smc1aQ9CU62 Tesmin-204ENSMUST00000151341 2013 ntTSL 1 (best) BASIC21.25■□□□□ 0.99
Smc1aQ9CU62 AC114678.1-201ENSMUST00000219640 622 ntTSL 3 BASIC21.25■□□□□ 0.99
Smc1aQ9CU62 Emc9-201ENSMUST00000022828 855 ntAPPRIS P1 TSL 1 (best) BASIC21.25■□□□□ 0.99
Smc1aQ9CU62 Cisd1-201ENSMUST00000045887 1084 ntAPPRIS P1 TSL 1 (best) BASIC21.25■□□□□ 0.99
Smc1aQ9CU62 Slc35f4-202ENSMUST00000123534 2748 ntTSL 1 (best) BASIC21.24■□□□□ 0.99
Smc1aQ9CU62 Sh3gl1-201ENSMUST00000003268 2072 ntAPPRIS P1 TSL 1 (best) BASIC21.24■□□□□ 0.99
Smc1aQ9CU62 Dusp26-201ENSMUST00000036631 1938 ntAPPRIS P1 TSL 1 (best) BASIC21.24■□□□□ 0.99
Smc1aQ9CU62 Rell2-204ENSMUST00000163591 1057 ntTSL 5 BASIC21.24■□□□□ 0.99
Smc1aQ9CU62 Gm6899-201ENSMUST00000089614 622 ntAPPRIS P1 BASIC21.24■□□□□ 0.99
Smc1aQ9CU62 Vav2-201ENSMUST00000056176 5221 ntAPPRIS P1 TSL 1 (best) BASIC21.24■□□□□ 0.99
Smc1aQ9CU62 Stk11-201ENSMUST00000003152 2566 ntAPPRIS P3 TSL 1 (best) BASIC21.24■□□□□ 0.99
Smc1aQ9CU62 Cacnb1-203ENSMUST00000103144 2236 ntTSL 5 BASIC21.24■□□□□ 0.99
Smc1aQ9CU62 Anapc5-218ENSMUST00000200645 2404 ntAPPRIS ALT2 TSL 1 (best) BASIC21.24■□□□□ 0.99
Smc1aQ9CU62 Gmds-201ENSMUST00000041859 1713 ntAPPRIS P1 TSL 1 (best) BASIC21.24■□□□□ 0.99
Smc1aQ9CU62 Pbx1-202ENSMUST00000072863 1709 ntTSL 1 (best) BASIC21.24■□□□□ 0.99
Smc1aQ9CU62 Pcnp-202ENSMUST00000114444 2295 ntAPPRIS P1 TSL 1 (best) BASIC21.24■□□□□ 0.99
Smc1aQ9CU62 Nsmf-205ENSMUST00000114386 2685 ntTSL 5 BASIC21.23■□□□□ 0.99
Smc1aQ9CU62 Rasef-203ENSMUST00000222414 2127 ntAPPRIS P1 TSL 5 BASIC21.23■□□□□ 0.99
Smc1aQ9CU62 Sept7-202ENSMUST00000165594 2516 ntAPPRIS P2 TSL 5 BASIC21.23■□□□□ 0.99
Smc1aQ9CU62 Aatf-201ENSMUST00000018841 1822 ntAPPRIS P1 TSL 1 (best) BASIC21.23■□□□□ 0.99
Smc1aQ9CU62 Uck1-201ENSMUST00000002625 2005 ntAPPRIS P1 TSL 1 (best) BASIC21.23■□□□□ 0.99
Smc1aQ9CU62 Col9a3-203ENSMUST00000132527 3046 ntAPPRIS P1 TSL 5 BASIC21.23■□□□□ 0.99
Smc1aQ9CU62 Mgll-202ENSMUST00000113581 1308 ntTSL 5 BASIC21.23■□□□□ 0.99
Smc1aQ9CU62 Elac2-201ENSMUST00000071891 2771 ntAPPRIS P2 TSL 1 (best) BASIC21.23■□□□□ 0.99
Smc1aQ9CU62 Btbd2-201ENSMUST00000003434 3026 ntAPPRIS P2 TSL 5 BASIC21.23■□□□□ 0.99
Smc1aQ9CU62 Rbm38-204ENSMUST00000173393 2071 ntAPPRIS P1 TSL 5 BASIC21.22■□□□□ 0.99
Smc1aQ9CU62 Nabp2-201ENSMUST00000026439 1130 ntAPPRIS P1 TSL 1 (best) BASIC21.22■□□□□ 0.99
Smc1aQ9CU62 Pank2-204ENSMUST00000150843 4266 ntAPPRIS P1 TSL 1 (best) BASIC21.22■□□□□ 0.99
Smc1aQ9CU62 Gfi1-203ENSMUST00000159164 2648 ntAPPRIS P3 TSL 1 (best) BASIC21.22■□□□□ 0.99
Smc1aQ9CU62 Soat2-201ENSMUST00000023806 2213 ntAPPRIS P1 TSL 1 (best) BASIC21.21■□□□□ 0.99
Smc1aQ9CU62 Mpig6b-202ENSMUST00000174190 729 ntAPPRIS P1 TSL 1 (best) BASIC21.21■□□□□ 0.99
Smc1aQ9CU62 Gm18671-201ENSMUST00000214826 683 ntBASIC21.21■□□□□ 0.99
Smc1aQ9CU62 Dbnl-201ENSMUST00000020769 1638 ntAPPRIS ALT2 TSL 1 (best) BASIC21.21■□□□□ 0.99
Smc1aQ9CU62 Utp11-201ENSMUST00000030738 1603 ntAPPRIS P1 TSL 1 (best) BASIC21.21■□□□□ 0.99
Smc1aQ9CU62 Epn1-202ENSMUST00000098845 2565 ntAPPRIS P2 TSL 1 (best) BASIC21.21■□□□□ 0.99
Smc1aQ9CU62 Jag1-201ENSMUST00000028735 5612 ntAPPRIS P1 TSL 1 (best) BASIC21.2■□□□□ 0.99
Smc1aQ9CU62 Tekt5-201ENSMUST00000043415 1803 ntAPPRIS ALT2 TSL 1 (best) BASIC21.2■□□□□ 0.98
Smc1aQ9CU62 Arhgap27-202ENSMUST00000092557 1504 ntTSL 2 BASIC21.2■□□□□ 0.98
Smc1aQ9CU62 Aktip-202ENSMUST00000120213 2200 ntAPPRIS P1 TSL 1 (best) BASIC21.2■□□□□ 0.98
Smc1aQ9CU62 Atxn7-203ENSMUST00000223880 2946 ntAPPRIS P2 BASIC21.2■□□□□ 0.98
Smc1aQ9CU62 Auh-203ENSMUST00000119311 2627 ntTSL 1 (best) BASIC21.2■□□□□ 0.98
Smc1aQ9CU62 Gm37179-201ENSMUST00000194862 823 ntBASIC21.2■□□□□ 0.98
Smc1aQ9CU62 Fcrlb-201ENSMUST00000094337 1284 ntAPPRIS P1 TSL 1 (best) BASIC21.2■□□□□ 0.98
Smc1aQ9CU62 Wdsub1-201ENSMUST00000028368 2072 ntAPPRIS P1 TSL 1 (best) BASIC21.2■□□□□ 0.98
Smc1aQ9CU62 1700030C10Rik-203ENSMUST00000189625 1735 ntTSL 1 (best) BASIC21.2■□□□□ 0.98
Smc1aQ9CU62 Rbm7-201ENSMUST00000170000 1773 ntAPPRIS P1 TSL 1 (best) BASIC21.2■□□□□ 0.98
Smc1aQ9CU62 Map4k4-201ENSMUST00000163854 5782 ntAPPRIS ALT2 TSL 5 BASIC21.2■□□□□ 0.98
Smc1aQ9CU62 Dnaja4-201ENSMUST00000070070 3003 ntAPPRIS P1 TSL 1 (best) BASIC21.2■□□□□ 0.98
Smc1aQ9CU62 4930412F12Rik-201ENSMUST00000211700 1471 ntBASIC21.2■□□□□ 0.98
Smc1aQ9CU62 AC165080.2-201ENSMUST00000217491 1530 ntBASIC21.19■□□□□ 0.98
Smc1aQ9CU62 Art5-201ENSMUST00000094128 1518 ntAPPRIS P1 TSL 2 BASIC21.19■□□□□ 0.98
Smc1aQ9CU62 1700003E16Rik-201ENSMUST00000032106 2020 ntAPPRIS P1 TSL 5 BASIC21.19■□□□□ 0.98
Smc1aQ9CU62 Rnf8-201ENSMUST00000024817 2077 ntAPPRIS P1 TSL 1 (best) BASIC21.19■□□□□ 0.98
Smc1aQ9CU62 Klf16-201ENSMUST00000038558 2674 ntAPPRIS P1 TSL 1 (best) BASIC21.19■□□□□ 0.98
Smc1aQ9CU62 Arl10-201ENSMUST00000026988 1046 ntAPPRIS P1 TSL 1 (best) BASIC21.19■□□□□ 0.98
Smc1aQ9CU62 Cmc4-201ENSMUST00000033543 992 ntAPPRIS P1 TSL 1 (best) BASIC21.19■□□□□ 0.98
Smc1aQ9CU62 B230217C12Rik-201ENSMUST00000054783 1189 ntAPPRIS P1 TSL 5 BASIC21.19■□□□□ 0.98
Smc1aQ9CU62 Klc3-201ENSMUST00000047170 1901 ntTSL 1 (best) BASIC21.19■□□□□ 0.98
Smc1aQ9CU62 Clk3-201ENSMUST00000065330 2496 ntAPPRIS P1 TSL 1 (best) BASIC21.19■□□□□ 0.98
Smc1aQ9CU62 Ppp1r21-201ENSMUST00000038551 3141 ntAPPRIS P1 TSL 1 (best) BASIC21.19■□□□□ 0.98
Smc1aQ9CU62 Kirrel-201ENSMUST00000041732 2160 ntAPPRIS ALT2 TSL 1 (best) BASIC21.19■□□□□ 0.98
Smc1aQ9CU62 Noa1-201ENSMUST00000047860 2288 ntAPPRIS P1 TSL 1 (best) BASIC21.18■□□□□ 0.98
Smc1aQ9CU62 Foxo3-204ENSMUST00000175881 2535 ntAPPRIS P1 TSL 1 (best) BASIC21.18■□□□□ 0.98
Smc1aQ9CU62 Ercc6l2-208ENSMUST00000144763 1820 ntTSL 1 (best) BASIC21.18■□□□□ 0.98
Smc1aQ9CU62 Prkar1b-201ENSMUST00000026973 2637 ntAPPRIS P1 TSL 1 (best) BASIC21.18■□□□□ 0.98
Smc1aQ9CU62 Smtnl2-201ENSMUST00000050226 2624 ntAPPRIS P2 TSL 1 (best) BASIC21.18■□□□□ 0.98
Smc1aQ9CU62 Cmtm7-204ENSMUST00000216760 665 ntTSL 1 (best) BASIC21.18■□□□□ 0.98
Smc1aQ9CU62 Myadml2-201ENSMUST00000026134 931 ntAPPRIS P1 TSL 1 (best) BASIC21.18■□□□□ 0.98
Smc1aQ9CU62 Chrac1-201ENSMUST00000089765 871 ntAPPRIS P2 TSL 1 (best) BASIC21.18■□□□□ 0.98
Smc1aQ9CU62 Deptor-203ENSMUST00000100660 1377 ntTSL 1 (best) BASIC21.18■□□□□ 0.98
Smc1aQ9CU62 Thoc3-201ENSMUST00000026990 2335 ntAPPRIS P1 TSL 1 (best) BASIC21.18■□□□□ 0.98
Smc1aQ9CU62 Gm27045-201ENSMUST00000182145 1402 ntBASIC21.18■□□□□ 0.98
Smc1aQ9CU62 Acot5-202ENSMUST00000072505 1401 ntTSL 1 (best) BASIC21.18■□□□□ 0.98
Smc1aQ9CU62 Zcchc24-201ENSMUST00000069180 4556 ntAPPRIS P1 TSL 1 (best) BASIC21.18■□□□□ 0.98
Smc1aQ9CU62 Agpat3-201ENSMUST00000001240 5980 ntAPPRIS P1 TSL 1 (best) BASIC21.18■□□□□ 0.98
Smc1aQ9CU62 Serbp1-207ENSMUST00000203436 1667 ntAPPRIS ALT2 TSL 1 (best) BASIC21.18■□□□□ 0.98
Smc1aQ9CU62 Bag5-202ENSMUST00000160576 1852 ntAPPRIS P1 TSL 1 (best) BASIC21.18■□□□□ 0.98
Smc1aQ9CU62 Mycl-202ENSMUST00000106252 3293 ntAPPRIS P1 TSL 1 (best) BASIC21.17■□□□□ 0.98
Smc1aQ9CU62 Dtymk-202ENSMUST00000112890 1055 ntTSL 1 (best) BASIC21.17■□□□□ 0.98
Smc1aQ9CU62 Pianp-204ENSMUST00000160704 1116 ntAPPRIS P2 TSL 1 (best) BASIC21.17■□□□□ 0.98
Smc1aQ9CU62 Gm27151-202ENSMUST00000185015 1145 ntTSL 5 BASIC21.17■□□□□ 0.98
Smc1aQ9CU62 Mrpl40-201ENSMUST00000023391 1185 ntAPPRIS P1 TSL 1 (best) BASIC21.17■□□□□ 0.98
Smc1aQ9CU62 Hist1h2ao-201ENSMUST00000091745 480 ntAPPRIS P1 BASIC21.17■□□□□ 0.98
Smc1aQ9CU62 Tomm40-202ENSMUST00000093552 1577 ntAPPRIS P1 TSL 1 (best) BASIC21.17■□□□□ 0.98
Smc1aQ9CU62 Tomm40-201ENSMUST00000032555 1646 ntAPPRIS P1 TSL 1 (best) BASIC21.17■□□□□ 0.98
Smc1aQ9CU62 Stoml1-201ENSMUST00000034883 1984 ntAPPRIS P1 TSL 1 (best) BASIC21.17■□□□□ 0.98
Smc1aQ9CU62 Dip2c-203ENSMUST00000174552 8023 ntAPPRIS P1 TSL 1 (best) BASIC21.17■□□□□ 0.98
Smc1aQ9CU62 Cacul1-203ENSMUST00000166712 5700 ntAPPRIS ALT2 TSL 5 BASIC21.17■□□□□ 0.98
Smc1aQ9CU62 A630072M18Rik-201ENSMUST00000190567 5410 ntBASIC21.16■□□□□ 0.98
Smc1aQ9CU62 Gm38342-201ENSMUST00000195710 2980 ntBASIC21.16■□□□□ 0.98
Smc1aQ9CU62 Aplp1-201ENSMUST00000006828 2343 ntAPPRIS P1 TSL 1 (best) BASIC21.16■□□□□ 0.98
Smc1aQ9CU62 Baiap2l2-201ENSMUST00000165408 2100 ntAPPRIS P1 TSL 1 (best) BASIC21.16■□□□□ 0.98
Smc1aQ9CU62 Tex264-202ENSMUST00000163441 1896 ntAPPRIS P1 TSL 1 (best) BASIC21.16■□□□□ 0.98
Smc1aQ9CU62 Zbtb11os1-201ENSMUST00000186480 1350 ntBASIC21.16■□□□□ 0.98
Retrieved 100 of 76,532 protein–RNA pairs in 25.5 ms