Protein–RNA interactions for Protein: Q8VC85

Lsm1, U6 snRNA-associated Sm-like protein LSm1, mousemouse

Predictions only

Length 133 aa.

Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Lsm1Q8VC85 Mafg-201ENSMUST00000058162 4923 ntAPPRIS P1 TSL 1 (best) BASIC18.33■□□□□ 0.52
Lsm1Q8VC85 Xkr4-201ENSMUST00000070533 3634 ntAPPRIS P1 TSL 1 (best) BASIC18.32■□□□□ 0.52
Lsm1Q8VC85 Ltb4r2-201ENSMUST00000044554 1439 ntAPPRIS P1 TSL 1 (best) BASIC18.32■□□□□ 0.52
Lsm1Q8VC85 Them6-201ENSMUST00000070923 1784 ntAPPRIS P1 TSL 1 (best) BASIC18.32■□□□□ 0.52
Lsm1Q8VC85 Pgf-204ENSMUST00000223220 2080 ntAPPRIS ALT2 TSL 1 (best) BASIC18.32■□□□□ 0.52
Lsm1Q8VC85 Ank1-202ENSMUST00000084038 8147 ntAPPRIS P3 TSL 1 (best) BASIC18.32■□□□□ 0.52
Lsm1Q8VC85 Xk-201ENSMUST00000015486 5076 ntAPPRIS P1 TSL 1 (best) BASIC18.32■□□□□ 0.52
Lsm1Q8VC85 Pou2f2-206ENSMUST00000108418 1934 ntTSL 1 (best) BASIC18.32■□□□□ 0.52
Lsm1Q8VC85 Slc39a5-201ENSMUST00000042666 1947 ntAPPRIS P1 TSL 1 (best) BASIC18.32■□□□□ 0.52
Lsm1Q8VC85 Prr3-204ENSMUST00000172900 439 ntTSL 2 BASIC18.32■□□□□ 0.52
Lsm1Q8VC85 D16Ertd472e-202ENSMUST00000114219 1576 ntAPPRIS P1 TSL 1 (best) BASIC18.32■□□□□ 0.52
Lsm1Q8VC85 Zcchc24-201ENSMUST00000069180 4556 ntAPPRIS P1 TSL 1 (best) BASIC18.32■□□□□ 0.52
Lsm1Q8VC85 Hoxa11os-201ENSMUST00000134512 1839 ntTSL 1 (best) BASIC18.32■□□□□ 0.52
Lsm1Q8VC85 Cldn23-201ENSMUST00000060128 1848 ntAPPRIS P1 BASIC18.32■□□□□ 0.52
Lsm1Q8VC85 6030419C18Rik-201ENSMUST00000085658 2139 ntAPPRIS P1 TSL 1 (best) BASIC18.32■□□□□ 0.52
Lsm1Q8VC85 Etnk1-203ENSMUST00000204947 1791 ntTSL 1 (best) BASIC18.32■□□□□ 0.52
Lsm1Q8VC85 Krtap5-2-202ENSMUST00000190456 1471 ntAPPRIS P2 BASIC18.32■□□□□ 0.52
Lsm1Q8VC85 Enah-203ENSMUST00000111025 3385 ntAPPRIS ALT2 TSL 5 BASIC18.31■□□□□ 0.52
Lsm1Q8VC85 Palm-202ENSMUST00000105379 2519 ntTSL 1 (best) BASIC18.31■□□□□ 0.52
Lsm1Q8VC85 Hdhd5-201ENSMUST00000075303 1928 ntAPPRIS P1 TSL 1 (best) BASIC18.31■□□□□ 0.52
Lsm1Q8VC85 Gm11747-201ENSMUST00000142751 1648 ntTSL 1 (best) BASIC18.31■□□□□ 0.52
Lsm1Q8VC85 Lrfn4-202ENSMUST00000113822 2918 ntAPPRIS P1 TSL 1 (best) BASIC18.31■□□□□ 0.52
Lsm1Q8VC85 Baz1a-201ENSMUST00000038926 6188 ntAPPRIS ALT2 TSL 5 BASIC18.31■□□□□ 0.52
Lsm1Q8VC85 Gm12251-201ENSMUST00000117893 792 ntBASIC18.31■□□□□ 0.52
Lsm1Q8VC85 BC004004-202ENSMUST00000120346 1297 ntAPPRIS P1 TSL 5 BASIC18.31■□□□□ 0.52
Lsm1Q8VC85 Gm20548-204ENSMUST00000174528 791 ntTSL 3 BASIC18.31■□□□□ 0.52
Lsm1Q8VC85 Bsg-205ENSMUST00000179781 1261 ntTSL 1 (best) BASIC18.31■□□□□ 0.52
Lsm1Q8VC85 Gm7160-202ENSMUST00000188519 1027 ntBASIC18.31■□□□□ 0.52
Lsm1Q8VC85 Hyi-205ENSMUST00000194248 936 ntTSL 1 (best) BASIC18.31■□□□□ 0.52
Lsm1Q8VC85 Scand1-201ENSMUST00000079125 759 ntAPPRIS P1 TSL 1 (best) BASIC18.31■□□□□ 0.52
Lsm1Q8VC85 Sstr1-202ENSMUST00000110671 1752 ntAPPRIS P1 TSL 2 BASIC18.31■□□□□ 0.52
Lsm1Q8VC85 Astn2-202ENSMUST00000084496 4675 ntAPPRIS ALT2 TSL 5 BASIC18.31■□□□□ 0.52
Lsm1Q8VC85 Tmem102-201ENSMUST00000051025 1933 ntAPPRIS P1 TSL 1 (best) BASIC18.31■□□□□ 0.52
Lsm1Q8VC85 Tmbim1-201ENSMUST00000016309 2378 ntAPPRIS P1 TSL 1 (best) BASIC18.31■□□□□ 0.52
Lsm1Q8VC85 2310015A10Rik-201ENSMUST00000180643 1399 ntTSL 1 (best) BASIC18.3■□□□□ 0.52
Lsm1Q8VC85 Klc3-203ENSMUST00000108458 1823 ntTSL 1 (best) BASIC18.3■□□□□ 0.52
Lsm1Q8VC85 Zfp579-206ENSMUST00000162731 2489 ntAPPRIS P1 BASIC18.3■□□□□ 0.52
Lsm1Q8VC85 Snx4-201ENSMUST00000023502 2442 ntAPPRIS P1 TSL 1 (best) BASIC18.3■□□□□ 0.52
Lsm1Q8VC85 Neil2-201ENSMUST00000038229 1932 ntAPPRIS P1 TSL 1 (best) BASIC18.3■□□□□ 0.52
Lsm1Q8VC85 Nbn-201ENSMUST00000029879 2533 ntAPPRIS P1 TSL 1 (best) BASIC18.29■□□□□ 0.52
Lsm1Q8VC85 Plin1-201ENSMUST00000032762 1916 ntAPPRIS P1 TSL 5 BASIC18.29■□□□□ 0.52
Lsm1Q8VC85 Slc35a3-201ENSMUST00000029569 5725 ntAPPRIS P1 TSL 1 (best) BASIC18.29■□□□□ 0.52
Lsm1Q8VC85 Trmt61a-201ENSMUST00000084947 2433 ntAPPRIS P1 TSL 1 (best) BASIC18.29■□□□□ 0.52
Lsm1Q8VC85 Pde6d-203ENSMUST00000146220 879 ntTSL 2 BASIC18.29■□□□□ 0.52
Lsm1Q8VC85 Gm29442-201ENSMUST00000188725 724 ntTSL 3 BASIC18.29■□□□□ 0.52
Lsm1Q8VC85 AC158777.2-201ENSMUST00000228787 398 ntAPPRIS P1 BASIC18.29■□□□□ 0.52
Lsm1Q8VC85 Slc22a23-201ENSMUST00000040336 6251 ntAPPRIS P1 TSL 1 (best) BASIC18.29■□□□□ 0.52
Lsm1Q8VC85 Nfatc2-201ENSMUST00000029057 2310 ntTSL 1 (best) BASIC18.29■□□□□ 0.52
Lsm1Q8VC85 Ehmt2-203ENSMUST00000097342 3934 ntAPPRIS ALT2 TSL 1 (best) BASIC18.29■□□□□ 0.52
Lsm1Q8VC85 Plekhm2-201ENSMUST00000030751 4154 ntAPPRIS ALT2 TSL 1 (best) BASIC18.29■□□□□ 0.52
Lsm1Q8VC85 Plppr3-201ENSMUST00000092325 2766 ntAPPRIS P3 TSL 1 (best) BASIC18.29■□□□□ 0.52
Lsm1Q8VC85 Tmem44-204ENSMUST00000140402 2405 ntAPPRIS P1 TSL 1 (best) BASIC18.29■□□□□ 0.52
Lsm1Q8VC85 Pdp1-206ENSMUST00000108302 2525 ntTSL 3 BASIC18.28■□□□□ 0.52
Lsm1Q8VC85 C630004M23Rik-201ENSMUST00000194765 1682 ntBASIC18.28■□□□□ 0.52
Lsm1Q8VC85 Gm4737-201ENSMUST00000059524 2093 ntAPPRIS P1 BASIC18.28■□□□□ 0.52
Lsm1Q8VC85 2810001G20Rik-202ENSMUST00000146333 959 ntTSL 3 BASIC18.28■□□□□ 0.52
Lsm1Q8VC85 Cdv3-ps-201ENSMUST00000169632 827 ntBASIC18.28■□□□□ 0.52
Lsm1Q8VC85 Fam168b-208ENSMUST00000191307 844 ntTSL 2 BASIC18.28■□□□□ 0.52
Lsm1Q8VC85 Rfxap-204ENSMUST00000217267 696 ntAPPRIS P2 TSL 1 (best) BASIC18.28■□□□□ 0.52
Lsm1Q8VC85 Gas2l1-203ENSMUST00000109895 2530 ntAPPRIS P3 TSL 1 (best) BASIC18.28■□□□□ 0.52
Lsm1Q8VC85 Erlin1-202ENSMUST00000112028 3136 ntAPPRIS P1 TSL 1 (best) BASIC18.27■□□□□ 0.52
Lsm1Q8VC85 Cables2-201ENSMUST00000108891 2975 ntAPPRIS P1 TSL 1 (best) BASIC18.27■□□□□ 0.52
Lsm1Q8VC85 Shisa4-201ENSMUST00000041240 1763 ntAPPRIS P1 TSL 1 (best) BASIC18.27■□□□□ 0.52
Lsm1Q8VC85 Yipf2-203ENSMUST00000180365 2014 ntAPPRIS P1 TSL 1 (best) BASIC18.27■□□□□ 0.52
Lsm1Q8VC85 Olfm2-204ENSMUST00000217198 2005 ntAPPRIS ALT2 TSL 3 BASIC18.27■□□□□ 0.52
Lsm1Q8VC85 Smap1-201ENSMUST00000027339 2289 ntAPPRIS P1 TSL 1 (best) BASIC18.27■□□□□ 0.52
Lsm1Q8VC85 Rps2-ps10-202ENSMUST00000170335 965 ntBASIC18.27■□□□□ 0.52
Lsm1Q8VC85 Rps7-203ENSMUST00000221871 820 ntAPPRIS P1 TSL 1 (best) BASIC18.27■□□□□ 0.52
Lsm1Q8VC85 Nkx2-1-202ENSMUST00000178477 2242 ntAPPRIS P1 TSL 1 (best) BASIC18.27■□□□□ 0.52
Lsm1Q8VC85 Oxct2a-201ENSMUST00000102640 1760 ntAPPRIS P1 BASIC18.27■□□□□ 0.51
Lsm1Q8VC85 Gatad2a-202ENSMUST00000116463 3363 ntAPPRIS ALT2 TSL 1 (best) BASIC18.27■□□□□ 0.51
Lsm1Q8VC85 Zdhhc13-201ENSMUST00000118927 2410 ntAPPRIS P1 TSL 1 (best) BASIC18.27■□□□□ 0.51
Lsm1Q8VC85 Gm6627-201ENSMUST00000218299 2386 ntBASIC18.26■□□□□ 0.51
Lsm1Q8VC85 Gm28523-201ENSMUST00000190040 1588 ntTSL 1 (best) BASIC18.26■□□□□ 0.51
Lsm1Q8VC85 Fzd2-201ENSMUST00000057893 3663 ntAPPRIS P1 BASIC18.26■□□□□ 0.51
Lsm1Q8VC85 Gm9885-202ENSMUST00000186234 2209 ntBASIC18.26■□□□□ 0.51
Lsm1Q8VC85 Mchr1-201ENSMUST00000166855 2188 ntAPPRIS P1 TSL 1 (best) BASIC18.26■□□□□ 0.51
Lsm1Q8VC85 Gm12660-201ENSMUST00000123764 664 ntTSL 3 BASIC18.26■□□□□ 0.51
Lsm1Q8VC85 1700064M15Rik-201ENSMUST00000185726 645 ntTSL 1 (best) BASIC18.26■□□□□ 0.51
Lsm1Q8VC85 Med31-201ENSMUST00000021157 1161 ntAPPRIS P1 TSL 1 (best) BASIC18.26■□□□□ 0.51
Lsm1Q8VC85 Gsc-201ENSMUST00000021513 1268 ntAPPRIS P1 TSL 1 (best) BASIC18.26■□□□□ 0.51
Lsm1Q8VC85 AC140930.3-201ENSMUST00000222935 274 ntBASIC18.26■□□□□ 0.51
Lsm1Q8VC85 AC165080.2-201ENSMUST00000217491 1530 ntBASIC18.26■□□□□ 0.51
Lsm1Q8VC85 C2cd4a-201ENSMUST00000054500 1395 ntAPPRIS P1 TSL 5 BASIC18.26■□□□□ 0.51
Lsm1Q8VC85 Tuba1b-201ENSMUST00000077577 1743 ntAPPRIS P1 TSL 1 (best) BASIC18.26■□□□□ 0.51
Lsm1Q8VC85 Maml1-201ENSMUST00000059458 5528 ntAPPRIS P1 TSL 1 (best) BASIC18.26■□□□□ 0.51
Lsm1Q8VC85 Phldb3-204ENSMUST00000206422 2564 ntAPPRIS P1 TSL 5 BASIC18.26■□□□□ 0.51
Lsm1Q8VC85 Lrrfip1-201ENSMUST00000068116 2050 ntAPPRIS ALT2 TSL 5 BASIC18.26■□□□□ 0.51
Lsm1Q8VC85 Gm5540-201ENSMUST00000131852 1848 ntBASIC18.26■□□□□ 0.51
Lsm1Q8VC85 Schip1-206ENSMUST00000182719 2156 ntTSL 1 (best) BASIC18.25■□□□□ 0.51
Lsm1Q8VC85 Lmtk3-204ENSMUST00000209617 5051 ntAPPRIS ALT2 TSL 1 (best) BASIC18.25■□□□□ 0.51
Lsm1Q8VC85 Qpct-201ENSMUST00000040789 1924 ntAPPRIS P1 TSL 1 (best) BASIC18.25■□□□□ 0.51
Lsm1Q8VC85 Trib3-201ENSMUST00000040312 2026 ntAPPRIS P1 TSL 1 (best) BASIC18.25■□□□□ 0.51
Lsm1Q8VC85 Kmt5b-204ENSMUST00000113970 2975 ntAPPRIS ALT2 TSL 1 (best) BASIC18.25■□□□□ 0.51
Lsm1Q8VC85 Taf3-203ENSMUST00000114907 695 ntTSL 1 (best) BASIC18.25■□□□□ 0.51
Lsm1Q8VC85 Gm21956-201ENSMUST00000179946 522 ntBASIC18.25■□□□□ 0.51
Lsm1Q8VC85 Flvcr1-202ENSMUST00000191946 1216 ntBASIC18.25■□□□□ 0.51
Lsm1Q8VC85 Gm38342-201ENSMUST00000195710 2980 ntBASIC18.25■□□□□ 0.51
Lsm1Q8VC85 Rcan3-201ENSMUST00000030606 5111 ntAPPRIS P1 TSL 1 (best) BASIC18.25■□□□□ 0.51
Lsm1Q8VC85 Rpap3-201ENSMUST00000023104 2260 ntAPPRIS P1 TSL 1 (best) BASIC18.25■□□□□ 0.51
Retrieved 100 of 76,532 protein–RNA pairs in 59.2 ms