Protein–RNA interactions for Protein: Q80SX8

Pif1, ATP-dependent DNA helicase PIF1, mousemouse

Predictions only

Length 650 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Pif1Q80SX8 Tfdp2-202ENSMUST00000165120 2341 ntAPPRIS ALT2 TSL 1 (best) BASIC17.61■□□□□ 0.41
Pif1Q80SX8 Gm15155-201ENSMUST00000112542 1009 ntAPPRIS P1 TSL 1 (best) BASIC17.61■□□□□ 0.41
Pif1Q80SX8 Ptbp3-204ENSMUST00000140925 606 ntTSL 3 BASIC17.61■□□□□ 0.41
Pif1Q80SX8 1700067K01Rik-203ENSMUST00000172548 986 ntAPPRIS P2 TSL 1 (best) BASIC17.61■□□□□ 0.41
Pif1Q80SX8 C430014B12Rik-202ENSMUST00000186858 657 ntTSL 2 BASIC17.61■□□□□ 0.41
Pif1Q80SX8 BC107364-201ENSMUST00000093126 1159 ntAPPRIS P4 TSL 1 (best) BASIC17.61■□□□□ 0.41
Pif1Q80SX8 Crb3-202ENSMUST00000097299 1206 ntAPPRIS P3 TSL 1 (best) BASIC17.61■□□□□ 0.41
Pif1Q80SX8 BC107364-202ENSMUST00000098841 1065 ntAPPRIS ALT2 TSL 1 (best) BASIC17.61■□□□□ 0.41
Pif1Q80SX8 Rab7-205ENSMUST00000113600 2159 ntAPPRIS P1 TSL 1 (best) BASIC17.61■□□□□ 0.41
Pif1Q80SX8 Snhg20-203ENSMUST00000182811 2153 ntBASIC17.61■□□□□ 0.41
Pif1Q80SX8 Sephs2-201ENSMUST00000082428 2177 ntAPPRIS P1 BASIC17.61■□□□□ 0.41
Pif1Q80SX8 Aifm2-201ENSMUST00000067857 1442 ntAPPRIS P1 TSL 1 (best) BASIC17.61■□□□□ 0.41
Pif1Q80SX8 H2-Q7-203ENSMUST00000078205 1419 ntTSL 5 BASIC17.61■□□□□ 0.41
Pif1Q80SX8 Mlf2-201ENSMUST00000032214 1451 ntAPPRIS P1 TSL 1 (best) BASIC17.61■□□□□ 0.41
Pif1Q80SX8 Inpp5a-203ENSMUST00000106098 2826 ntAPPRIS P1 TSL 1 (best) BASIC17.61■□□□□ 0.41
Pif1Q80SX8 Aire-203ENSMUST00000105396 1749 ntAPPRIS ALT2 TSL 1 (best) BASIC17.61■□□□□ 0.41
Pif1Q80SX8 Aire-214ENSMUST00000154374 1712 ntAPPRIS ALT2 TSL 1 (best) BASIC17.61■□□□□ 0.41
Pif1Q80SX8 Aire-215ENSMUST00000155021 1737 ntAPPRIS ALT2 TSL 1 (best) BASIC17.61■□□□□ 0.41
Pif1Q80SX8 Laptm4a-201ENSMUST00000020909 1773 ntAPPRIS P1 TSL 1 (best) BASIC17.61■□□□□ 0.41
Pif1Q80SX8 Matk-205ENSMUST00000121205 1841 ntAPPRIS ALT2 TSL 1 (best) BASIC17.61■□□□□ 0.41
Pif1Q80SX8 Gnas-205ENSMUST00000109083 730 ntTSL 2 BASIC17.6■□□□□ 0.41
Pif1Q80SX8 Cdk19os-202ENSMUST00000143103 1124 ntTSL 1 (best) BASIC17.6■□□□□ 0.41
Pif1Q80SX8 Tnfaip8-208ENSMUST00000148989 1002 ntAPPRIS P1 TSL 2 BASIC17.6■□□□□ 0.41
Pif1Q80SX8 Gm22240-201ENSMUST00000175225 82 ntBASIC17.6■□□□□ 0.41
Pif1Q80SX8 4930519P11Rik-201ENSMUST00000181369 501 ntAPPRIS P1 BASIC17.6■□□□□ 0.41
Pif1Q80SX8 Lhx1-204ENSMUST00000184646 1201 ntTSL 5 BASIC17.6■□□□□ 0.41
Pif1Q80SX8 Cck-204ENSMUST00000216138 799 ntTSL 1 (best) BASIC17.6■□□□□ 0.41
Pif1Q80SX8 Dxo-201ENSMUST00000046244 1519 ntAPPRIS P1 TSL 1 (best) BASIC17.6■□□□□ 0.41
Pif1Q80SX8 Usp2-202ENSMUST00000065461 2057 ntAPPRIS P2 TSL 1 (best) BASIC17.6■□□□□ 0.41
Pif1Q80SX8 Map2k1-201ENSMUST00000005066 2436 ntAPPRIS P1 TSL 1 (best) BASIC17.6■□□□□ 0.41
Pif1Q80SX8 Atmin-201ENSMUST00000109099 4877 ntAPPRIS P1 TSL 1 (best) BASIC17.59■□□□□ 0.41
Pif1Q80SX8 Prmt8-201ENSMUST00000032500 2724 ntAPPRIS P1 TSL 1 (best) BASIC17.59■□□□□ 0.41
Pif1Q80SX8 Dbf4-201ENSMUST00000002368 2401 ntAPPRIS ALT2 TSL 1 (best) BASIC17.59■□□□□ 0.41
Pif1Q80SX8 Riox1-201ENSMUST00000053744 2344 ntAPPRIS P1 BASIC17.59■□□□□ 0.41
Pif1Q80SX8 Hist1h4c-201ENSMUST00000102967 820 ntAPPRIS P1 BASIC17.59■□□□□ 0.41
Pif1Q80SX8 Josd2-204ENSMUST00000118628 864 ntAPPRIS P1 TSL 2 BASIC17.59■□□□□ 0.41
Pif1Q80SX8 Dsg2-203ENSMUST00000121837 953 ntTSL 1 (best) BASIC17.59■□□□□ 0.41
Pif1Q80SX8 Josd2-201ENSMUST00000035844 930 ntAPPRIS P1 TSL 1 (best) BASIC17.59■□□□□ 0.41
Pif1Q80SX8 1700018M17Rik-201ENSMUST00000052502 456 ntBASIC17.59■□□□□ 0.41
Pif1Q80SX8 Wnt10b-203ENSMUST00000226610 2217 ntAPPRIS P1 BASIC17.59■□□□□ 0.41
Pif1Q80SX8 Wnt10b-201ENSMUST00000023732 2226 ntAPPRIS P1 TSL 5 BASIC17.59■□□□□ 0.41
Pif1Q80SX8 Gm37035-201ENSMUST00000194809 2148 ntBASIC17.59■□□□□ 0.41
Pif1Q80SX8 Ccnd3-201ENSMUST00000037333 1999 ntAPPRIS P1 TSL 1 (best) BASIC17.59■□□□□ 0.41
Pif1Q80SX8 Elavl1-201ENSMUST00000098950 5743 ntAPPRIS P1 TSL 1 (best) BASIC17.59■□□□□ 0.41
Pif1Q80SX8 Mgat5b-201ENSMUST00000103027 4258 ntAPPRIS P1 TSL 5 BASIC17.58■□□□□ 0.41
Pif1Q80SX8 N4bp1-201ENSMUST00000034074 6469 ntAPPRIS P1 TSL 1 (best) BASIC17.58■□□□□ 0.41
Pif1Q80SX8 Capzb-204ENSMUST00000102508 1674 ntAPPRIS ALT1 TSL 1 (best) BASIC17.58■□□□□ 0.41
Pif1Q80SX8 Cbln2-201ENSMUST00000068423 2475 ntAPPRIS P1 TSL 1 (best) BASIC17.58■□□□□ 0.41
Pif1Q80SX8 Gm43859-201ENSMUST00000200075 1412 ntBASIC17.58■□□□□ 0.41
Pif1Q80SX8 Akr1a1-201ENSMUST00000030455 1420 ntAPPRIS P1 TSL 1 (best) BASIC17.58■□□□□ 0.41
Pif1Q80SX8 Gm10655-201ENSMUST00000098658 1397 ntBASIC17.58■□□□□ 0.4
Pif1Q80SX8 Stx1a-201ENSMUST00000005509 2162 ntAPPRIS P1 TSL 1 (best) BASIC17.58■□□□□ 0.4
Pif1Q80SX8 Ube2b-202ENSMUST00000109086 585 ntAPPRIS P1 TSL 2 BASIC17.58■□□□□ 0.4
Pif1Q80SX8 Gm12527-201ENSMUST00000117967 564 ntBASIC17.58■□□□□ 0.4
Pif1Q80SX8 Gm13534-201ENSMUST00000121169 513 ntBASIC17.58■□□□□ 0.4
Pif1Q80SX8 Ndufa12-204ENSMUST00000179990 566 ntTSL 1 (best) BASIC17.58■□□□□ 0.4
Pif1Q80SX8 Areg-201ENSMUST00000031325 1215 ntAPPRIS P1 TSL 1 (best) BASIC17.58■□□□□ 0.4
Pif1Q80SX8 Tcap-201ENSMUST00000008021 948 ntAPPRIS P1 TSL 1 (best) BASIC17.58■□□□□ 0.4
Pif1Q80SX8 Ankrd33b-203ENSMUST00000110410 2070 ntAPPRIS P3 TSL 1 (best) BASIC17.58■□□□□ 0.4
Pif1Q80SX8 Cdkn3-203ENSMUST00000227149 1952 ntBASIC17.58■□□□□ 0.4
Pif1Q80SX8 Fbxw8-201ENSMUST00000049474 5000 ntAPPRIS P1 TSL 1 (best) BASIC17.58■□□□□ 0.4
Pif1Q80SX8 Fbxw2-206ENSMUST00000113080 1923 ntAPPRIS P1 TSL 1 (best) BASIC17.58■□□□□ 0.4
Pif1Q80SX8 Unc5b-201ENSMUST00000077925 5869 ntAPPRIS P1 TSL 1 (best) BASIC17.58■□□□□ 0.4
Pif1Q80SX8 Rbmxl1-202ENSMUST00000211719 1622 ntAPPRIS P1 TSL 1 (best) BASIC17.58■□□□□ 0.4
Pif1Q80SX8 Mael-201ENSMUST00000038782 1546 ntAPPRIS P1 TSL 1 (best) BASIC17.57■□□□□ 0.4
Pif1Q80SX8 Idnk-202ENSMUST00000109868 1462 ntTSL 1 (best) BASIC17.57■□□□□ 0.4
Pif1Q80SX8 Tsen54-201ENSMUST00000021134 1979 ntAPPRIS P2 TSL 1 (best) BASIC17.57■□□□□ 0.4
Pif1Q80SX8 Mylip-201ENSMUST00000038275 3065 ntAPPRIS P1 TSL 1 (best) BASIC17.57■□□□□ 0.4
Pif1Q80SX8 Lsm14a-201ENSMUST00000085585 2944 ntAPPRIS P1 TSL 1 (best) BASIC17.57■□□□□ 0.4
Pif1Q80SX8 Etv2-201ENSMUST00000108147 1048 ntAPPRIS P1 TSL 1 (best) BASIC17.57■□□□□ 0.4
Pif1Q80SX8 Mcl1-202ENSMUST00000178686 858 ntAPPRIS ALT2 TSL 1 (best) BASIC17.57■□□□□ 0.4
Pif1Q80SX8 Gm40460-201ENSMUST00000211591 735 ntAPPRIS P1 BASIC17.57■□□□□ 0.4
Pif1Q80SX8 Ndufa5-201ENSMUST00000023851 875 ntAPPRIS P1 TSL 1 (best) BASIC17.57■□□□□ 0.4
Pif1Q80SX8 Nudt14-201ENSMUST00000002881 734 ntTSL 2 BASIC17.57■□□□□ 0.4
Pif1Q80SX8 Pop5-201ENSMUST00000081497 1025 ntAPPRIS P1 TSL 5 BASIC17.57■□□□□ 0.4
Pif1Q80SX8 Cdc37l1-205ENSMUST00000224599 1769 ntBASIC17.57■□□□□ 0.4
Pif1Q80SX8 Gm38399-201ENSMUST00000112103 1645 ntTSL 2 BASIC17.57■□□□□ 0.4
Pif1Q80SX8 Tmem230-206ENSMUST00000180286 1531 ntAPPRIS P1 TSL 2 BASIC17.57■□□□□ 0.4
Pif1Q80SX8 Foxf2-201ENSMUST00000042054 2363 ntAPPRIS P1 TSL 1 (best) BASIC17.57■□□□□ 0.4
Pif1Q80SX8 Zfp771-201ENSMUST00000052509 1484 ntAPPRIS P1 TSL 1 (best) BASIC17.56■□□□□ 0.4
Pif1Q80SX8 Fam49b-207ENSMUST00000228226 1896 ntAPPRIS P1 BASIC17.56■□□□□ 0.4
Pif1Q80SX8 Exoc3l2-201ENSMUST00000011407 2200 ntTSL 5 BASIC17.56■□□□□ 0.4
Pif1Q80SX8 Tfap2e-201ENSMUST00000048194 2085 ntAPPRIS P1 TSL 1 (best) BASIC17.56■□□□□ 0.4
Pif1Q80SX8 Tomm6-201ENSMUST00000113301 594 ntAPPRIS P1 TSL 2 BASIC17.56■□□□□ 0.4
Pif1Q80SX8 Slc7a6os-201ENSMUST00000035925 1246 ntAPPRIS P1 TSL 1 (best) BASIC17.56■□□□□ 0.4
Pif1Q80SX8 Dennd6a-202ENSMUST00000203874 2677 ntTSL 1 (best) BASIC17.56■□□□□ 0.4
Pif1Q80SX8 Gm5475-201ENSMUST00000132119 2608 ntAPPRIS P5 TSL 1 (best) BASIC17.56■□□□□ 0.4
Pif1Q80SX8 Kmt5b-216ENSMUST00000176926 1551 ntAPPRIS ALT2 TSL 5 BASIC17.56■□□□□ 0.4
Pif1Q80SX8 Dynll2-201ENSMUST00000020775 2476 ntAPPRIS P1 TSL 1 (best) BASIC17.56■□□□□ 0.4
Pif1Q80SX8 Cdan1-202ENSMUST00000110701 6384 ntAPPRIS P2 TSL 5 BASIC17.56■□□□□ 0.4
Pif1Q80SX8 Cacnb1-203ENSMUST00000103144 2236 ntTSL 5 BASIC17.55■□□□□ 0.4
Pif1Q80SX8 Lacc1-201ENSMUST00000062789 2444 ntAPPRIS P1 TSL 1 (best) BASIC17.55■□□□□ 0.4
Pif1Q80SX8 Nrg3-203ENSMUST00000173780 2137 ntAPPRIS ALT2 TSL 5 BASIC17.55■□□□□ 0.4
Pif1Q80SX8 2610035F20Rik-202ENSMUST00000177306 1149 ntTSL 1 (best) BASIC17.55■□□□□ 0.4
Pif1Q80SX8 Eloc-203ENSMUST00000185771 742 ntAPPRIS P1 TSL 5 BASIC17.55■□□□□ 0.4
Pif1Q80SX8 Gm8520-201ENSMUST00000186517 868 ntBASIC17.55■□□□□ 0.4
Pif1Q80SX8 Fgf22-203ENSMUST00000219981 1070 ntTSL 1 (best) BASIC17.55■□□□□ 0.4
Pif1Q80SX8 Uqcc2-201ENSMUST00000025045 500 ntAPPRIS P1 TSL 1 (best) BASIC17.55■□□□□ 0.4
Pif1Q80SX8 Tmem54-201ENSMUST00000030575 1064 ntTSL 1 (best) BASIC17.55■□□□□ 0.4
Pif1Q80SX8 Mrps23-203ENSMUST00000118784 1404 ntTSL 1 (best) BASIC17.55■□□□□ 0.4
Retrieved 100 of 76,532 protein–RNA pairs in 22.8 ms