Protein–RNA interactions for Protein: Q6PGB8

Smarca1, Probable global transcription activator SNF2L1, mousemouse

Predictions only

Length 1,046 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Smarca1Q6PGB8 Sdf2l1-201ENSMUST00000023453 1108 ntAPPRIS P1 TSL 1 (best) BASIC21.3■■□□□ 1
Smarca1Q6PGB8 Zbtb11os1-201ENSMUST00000186480 1350 ntBASIC21.3■■□□□ 1
Smarca1Q6PGB8 Paics-203ENSMUST00000120912 2345 ntAPPRIS P1 TSL 1 (best) BASIC21.3■■□□□ 1
Smarca1Q6PGB8 Klhdc10-202ENSMUST00000068259 5901 ntAPPRIS P1 TSL 1 (best) BASIC21.3■■□□□ 1
Smarca1Q6PGB8 Stk11-201ENSMUST00000003152 2566 ntAPPRIS P3 TSL 1 (best) BASIC21.3■■□□□ 1
Smarca1Q6PGB8 Ddah2-201ENSMUST00000007255 1342 ntAPPRIS P1 TSL 1 (best) BASIC21.29■■□□□ 1
Smarca1Q6PGB8 Sbspon-201ENSMUST00000040695 2748 ntAPPRIS P1 TSL 1 (best) BASIC21.29■■□□□ 1
Smarca1Q6PGB8 Fam105a-202ENSMUST00000226145 2950 ntAPPRIS P1 BASIC21.29■■□□□ 1
Smarca1Q6PGB8 Actrt3-201ENSMUST00000047630 1961 ntAPPRIS P1 TSL 1 (best) BASIC21.29■■□□□ 1
Smarca1Q6PGB8 Prcd-201ENSMUST00000106381 724 ntTSL 3 BASIC21.29■■□□□ 1
Smarca1Q6PGB8 Gm27801-201ENSMUST00000184174 223 ntBASIC21.29■■□□□ 1
Smarca1Q6PGB8 Stx2-201ENSMUST00000031378 2939 ntAPPRIS P3 TSL 1 (best) BASIC21.29■■□□□ 1
Smarca1Q6PGB8 Mall-201ENSMUST00000028856 2006 ntAPPRIS P1 TSL 1 (best) BASIC21.29■■□□□ 1
Smarca1Q6PGB8 Pqlc3-201ENSMUST00000054536 1928 ntAPPRIS P1 TSL 1 (best) BASIC21.29■■□□□ 1
Smarca1Q6PGB8 Vapa-201ENSMUST00000024897 1640 ntAPPRIS P1 TSL 1 (best) BASIC21.29■■□□□ 1
Smarca1Q6PGB8 Cox18-202ENSMUST00000118816 1307 ntAPPRIS ALT2 TSL 1 (best) BASIC21.29■■□□□ 1
Smarca1Q6PGB8 Wipi2-202ENSMUST00000110778 1959 ntAPPRIS P1 TSL 5 BASIC21.28■■□□□ 1
Smarca1Q6PGB8 5033417F24Rik-201ENSMUST00000181575 1787 ntTSL 1 (best) BASIC21.28■■□□□ 1
Smarca1Q6PGB8 Zbtb7c-202ENSMUST00000167921 2147 ntAPPRIS P1 TSL 1 (best) BASIC21.28■■□□□ 1
Smarca1Q6PGB8 Foxa2-201ENSMUST00000047315 2128 ntAPPRIS P3 TSL 1 (best) BASIC21.28■■□□□ 1
Smarca1Q6PGB8 Hpca-204ENSMUST00000116444 1847 ntAPPRIS P1 TSL 5 BASIC21.28■■□□□ 1
Smarca1Q6PGB8 Tmbim6-202ENSMUST00000159209 944 ntAPPRIS P1 TSL 5 BASIC21.28■■□□□ 1
Smarca1Q6PGB8 Zcchc2-201ENSMUST00000118196 5796 ntAPPRIS P4 TSL 5 BASIC21.28■■□□□ 1
Smarca1Q6PGB8 Stoml1-201ENSMUST00000034883 1984 ntAPPRIS P1 TSL 1 (best) BASIC21.28■■□□□ 1
Smarca1Q6PGB8 Arhgap23-202ENSMUST00000107601 5450 ntTSL 5 BASIC21.28■■□□□ 1
Smarca1Q6PGB8 Exoc5-206ENSMUST00000161504 2582 ntTSL 5 BASIC21.28■■□□□ 1
Smarca1Q6PGB8 Tnpo2-207ENSMUST00000211601 2941 ntTSL 1 (best) BASIC21.28■■□□□ 1
Smarca1Q6PGB8 Hopxos-201ENSMUST00000148568 1661 ntTSL 1 (best) BASIC21.28■■□□□ 1
Smarca1Q6PGB8 Gm12524-201ENSMUST00000143109 1583 ntTSL 1 (best) BASIC21.27■■□□□ 1
Smarca1Q6PGB8 Trim33-202ENSMUST00000106860 5025 ntAPPRIS ALT2 TSL 1 (best) BASIC21.27■■□□□ 1
Smarca1Q6PGB8 Hyal2-207ENSMUST00000195752 2062 ntAPPRIS P2 TSL 5 BASIC21.27■■□□□ 1
Smarca1Q6PGB8 Kis2-201ENSMUST00000133214 1717 ntTSL 1 (best) BASIC21.27■■□□□ 1
Smarca1Q6PGB8 Tifa-201ENSMUST00000054483 2245 ntAPPRIS P1 TSL 1 (best) BASIC21.27■■□□□ 1
Smarca1Q6PGB8 Gm14281-201ENSMUST00000121700 1294 ntBASIC21.27■■□□□ 1
Smarca1Q6PGB8 Gm12660-201ENSMUST00000123764 664 ntTSL 3 BASIC21.27■■□□□ 1
Smarca1Q6PGB8 Yjefn3-203ENSMUST00000180068 629 ntTSL 5 BASIC21.27■■□□□ 1
Smarca1Q6PGB8 Cox14-201ENSMUST00000023761 723 ntAPPRIS P1 TSL 1 (best) BASIC21.27■■□□□ 1
Smarca1Q6PGB8 Igfbp6-201ENSMUST00000023807 1112 ntAPPRIS P1 TSL 1 (best) BASIC21.27■■□□□ 1
Smarca1Q6PGB8 Cdkn2a-201ENSMUST00000060501 852 ntTSL 1 (best) BASIC21.27■■□□□ 1
Smarca1Q6PGB8 Trim72-201ENSMUST00000081042 1755 ntAPPRIS P1 TSL 1 (best) BASIC21.27■■□□□ 1
Smarca1Q6PGB8 Mvb12b-201ENSMUST00000041555 4998 ntAPPRIS P1 TSL 1 (best) BASIC21.27■■□□□ 1
Smarca1Q6PGB8 Rcor3-203ENSMUST00000192128 1578 ntAPPRIS P3 TSL 1 (best) BASIC21.27■□□□□ 0.99
Smarca1Q6PGB8 Eif4h-205ENSMUST00000202622 2726 ntAPPRIS P3 TSL 1 (best) BASIC21.27■□□□□ 0.99
Smarca1Q6PGB8 Gnb5-206ENSMUST00000215875 2105 ntAPPRIS P1 TSL 1 (best) BASIC21.26■□□□□ 0.99
Smarca1Q6PGB8 Gm13830-204ENSMUST00000149609 1851 ntTSL 1 (best) BASIC21.26■□□□□ 0.99
Smarca1Q6PGB8 Vim-206ENSMUST00000193675 1777 ntAPPRIS ALT2 TSL 5 BASIC21.26■□□□□ 0.99
Smarca1Q6PGB8 Tmem11-203ENSMUST00000168218 1511 ntTSL 2 BASIC21.26■□□□□ 0.99
Smarca1Q6PGB8 Dcbld2-201ENSMUST00000046663 6561 ntAPPRIS P1 TSL 1 (best) BASIC21.26■□□□□ 0.99
Smarca1Q6PGB8 Chd3os-201ENSMUST00000129321 2081 ntAPPRIS P1 TSL 1 (best) BASIC21.26■□□□□ 0.99
Smarca1Q6PGB8 Gm38165-201ENSMUST00000191654 486 ntTSL 1 (best) BASIC21.26■□□□□ 0.99
Smarca1Q6PGB8 AC154266.1-201ENSMUST00000223190 503 ntBASIC21.26■□□□□ 0.99
Smarca1Q6PGB8 Gm15645-201ENSMUST00000131504 2208 ntTSL 5 BASIC21.26■□□□□ 0.99
Smarca1Q6PGB8 Tcp11-201ENSMUST00000042692 1984 ntAPPRIS P3 TSL 1 (best) BASIC21.26■□□□□ 0.99
Smarca1Q6PGB8 Hipk1-201ENSMUST00000029438 4185 ntAPPRIS P1 TSL 1 (best) BASIC21.26■□□□□ 0.99
Smarca1Q6PGB8 Pknox2-201ENSMUST00000039674 3632 ntAPPRIS P1 TSL 1 (best) BASIC21.25■□□□□ 0.99
Smarca1Q6PGB8 Setd3-201ENSMUST00000071095 2755 ntAPPRIS P1 TSL 1 (best) BASIC21.25■□□□□ 0.99
Smarca1Q6PGB8 0610038B21Rik-202ENSMUST00000184762 1524 ntBASIC21.25■□□□□ 0.99
Smarca1Q6PGB8 Polr1d-202ENSMUST00000110557 1137 ntTSL 1 (best) BASIC21.25■□□□□ 0.99
Smarca1Q6PGB8 Nsmf-206ENSMUST00000114388 2781 ntAPPRIS ALT2 TSL 1 (best) BASIC21.25■□□□□ 0.99
Smarca1Q6PGB8 Crnde-206ENSMUST00000179421 773 ntTSL 3 BASIC21.25■□□□□ 0.99
Smarca1Q6PGB8 0610010K14Rik-202ENSMUST00000021181 779 ntTSL 1 (best) BASIC21.25■□□□□ 0.99
Smarca1Q6PGB8 Smtnl2-201ENSMUST00000050226 2624 ntAPPRIS P2 TSL 1 (best) BASIC21.25■□□□□ 0.99
Smarca1Q6PGB8 Rpl13-201ENSMUST00000000756 780 ntAPPRIS P1 TSL 1 (best) BASIC21.25■□□□□ 0.99
Smarca1Q6PGB8 Ppp1r21-201ENSMUST00000038551 3141 ntAPPRIS P1 TSL 1 (best) BASIC21.25■□□□□ 0.99
Smarca1Q6PGB8 Hgsnat-201ENSMUST00000037609 2694 ntAPPRIS P1 TSL 1 (best) BASIC21.25■□□□□ 0.99
Smarca1Q6PGB8 Mpp6-201ENSMUST00000036225 1896 ntTSL 1 (best) BASIC21.24■□□□□ 0.99
Smarca1Q6PGB8 Pigt-202ENSMUST00000117066 1712 ntAPPRIS ALT2 TSL 1 (best) BASIC21.24■□□□□ 0.99
Smarca1Q6PGB8 Ttc39a-203ENSMUST00000106619 1778 ntTSL 1 (best) BASIC21.24■□□□□ 0.99
Smarca1Q6PGB8 Shisa4-201ENSMUST00000041240 1763 ntAPPRIS P1 TSL 1 (best) BASIC21.24■□□□□ 0.99
Smarca1Q6PGB8 Gm10849-201ENSMUST00000100397 618 ntBASIC21.24■□□□□ 0.99
Smarca1Q6PGB8 Vax2os-202ENSMUST00000150233 595 ntTSL 3 BASIC21.24■□□□□ 0.99
Smarca1Q6PGB8 Arv1-201ENSMUST00000034463 1165 ntAPPRIS P1 TSL 1 (best) BASIC21.24■□□□□ 0.99
Smarca1Q6PGB8 Gm10153-201ENSMUST00000084415 522 ntTSL 5 BASIC21.24■□□□□ 0.99
Smarca1Q6PGB8 6820408C15Rik-201ENSMUST00000039961 1684 ntAPPRIS P1 TSL 1 (best) BASIC21.24■□□□□ 0.99
Smarca1Q6PGB8 Gm26995-201ENSMUST00000182216 1306 ntTSL 1 (best) BASIC21.24■□□□□ 0.99
Smarca1Q6PGB8 Tesmin-201ENSMUST00000025840 2234 ntAPPRIS P3 TSL 1 (best) BASIC21.24■□□□□ 0.99
Smarca1Q6PGB8 1810055G02Rik-201ENSMUST00000039048 1882 ntAPPRIS P1 TSL 1 (best) BASIC21.24■□□□□ 0.99
Smarca1Q6PGB8 Creb3l1-201ENSMUST00000028663 2603 ntAPPRIS P1 TSL 1 (best) BASIC21.24■□□□□ 0.99
Smarca1Q6PGB8 Gm5784-201ENSMUST00000179344 2478 ntBASIC21.23■□□□□ 0.99
Smarca1Q6PGB8 Plin1-202ENSMUST00000178257 1841 ntAPPRIS P1 TSL 1 (best) BASIC21.23■□□□□ 0.99
Smarca1Q6PGB8 AC124603.1-201ENSMUST00000223843 308 ntBASIC21.23■□□□□ 0.99
Smarca1Q6PGB8 Emc9-201ENSMUST00000022828 855 ntAPPRIS P1 TSL 1 (best) BASIC21.23■□□□□ 0.99
Smarca1Q6PGB8 Iqsec1-210ENSMUST00000212100 3500 ntTSL 5 BASIC21.23■□□□□ 0.99
Smarca1Q6PGB8 Clcn4-206ENSMUST00000210594 2539 ntAPPRIS ALT2 TSL 5 BASIC21.23■□□□□ 0.99
Smarca1Q6PGB8 Fkbp1a-201ENSMUST00000044011 1658 ntAPPRIS P1 TSL 1 (best) BASIC21.22■□□□□ 0.99
Smarca1Q6PGB8 Cebpa-201ENSMUST00000042985 2626 ntAPPRIS P1 BASIC21.22■□□□□ 0.99
Smarca1Q6PGB8 Gpx4-202ENSMUST00000105372 959 ntAPPRIS P1 TSL 1 (best) BASIC21.22■□□□□ 0.99
Smarca1Q6PGB8 6430500D05Rik-201ENSMUST00000198286 1176 ntBASIC21.22■□□□□ 0.99
Smarca1Q6PGB8 Pnck-202ENSMUST00000114472 1532 ntAPPRIS P1 TSL 1 (best) BASIC21.22■□□□□ 0.99
Smarca1Q6PGB8 Wnt10a-201ENSMUST00000006718 2468 ntAPPRIS P1 TSL 1 (best) BASIC21.22■□□□□ 0.99
Smarca1Q6PGB8 Slc39a5-202ENSMUST00000167859 2025 ntAPPRIS P1 TSL 1 (best) BASIC21.22■□□□□ 0.99
Smarca1Q6PGB8 AC126028.2-201ENSMUST00000228100 1833 ntBASIC21.22■□□□□ 0.99
Smarca1Q6PGB8 Cd82-201ENSMUST00000028644 1824 ntAPPRIS P1 TSL 1 (best) BASIC21.22■□□□□ 0.99
Smarca1Q6PGB8 Rasa1-201ENSMUST00000109552 4563 ntAPPRIS P1 TSL 1 (best) BASIC21.22■□□□□ 0.99
Smarca1Q6PGB8 Vgll2-202ENSMUST00000163017 1650 ntAPPRIS P3 TSL 1 (best) BASIC21.21■□□□□ 0.99
Smarca1Q6PGB8 Crlf2-203ENSMUST00000200284 1405 ntAPPRIS ALT2 TSL 1 (best) BASIC21.21■□□□□ 0.99
Smarca1Q6PGB8 Golga5-202ENSMUST00000179218 2827 ntAPPRIS P1 TSL 1 (best) BASIC21.21■□□□□ 0.99
Smarca1Q6PGB8 Stum-202ENSMUST00000179826 601 ntAPPRIS ALT1 TSL 5 BASIC21.21■□□□□ 0.99
Smarca1Q6PGB8 Gm29257-201ENSMUST00000186115 639 ntBASIC21.21■□□□□ 0.99
Smarca1Q6PGB8 Gm6916-201ENSMUST00000205277 828 ntTSL 3 BASIC21.21■□□□□ 0.99
Retrieved 100 of 76,532 protein–RNA pairs in 39.2 ms