Protein–RNA interactions for Protein: Q63870

Col7a1, Collagen alpha-1(VII) chain, mousemouse

Predictions only

Length 2,944 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Col7a1Q63870 Adgrb1-203ENSMUST00000185682 2744 ntTSL 1 (best) BASIC16.2■□□□□ 0.18
Col7a1Q63870 Nthl1-201ENSMUST00000047611 1080 ntAPPRIS P1 TSL 1 (best) BASIC16.2■□□□□ 0.18
Col7a1Q63870 Smox-207ENSMUST00000110186 2170 ntTSL 1 (best) BASIC16.2■□□□□ 0.18
Col7a1Q63870 Kazald1-202ENSMUST00000111948 1625 ntAPPRIS P1 TSL 1 (best) BASIC16.2■□□□□ 0.18
Col7a1Q63870 Shisa5-202ENSMUST00000112059 1910 ntAPPRIS ALT2 TSL 1 (best) BASIC16.2■□□□□ 0.18
Col7a1Q63870 Dalrd3-201ENSMUST00000019183 1746 ntAPPRIS P1 TSL 1 (best) BASIC16.2■□□□□ 0.18
Col7a1Q63870 Grina-201ENSMUST00000023225 1693 ntAPPRIS P1 TSL 1 (best) BASIC16.2■□□□□ 0.18
Col7a1Q63870 Nat8f3-202ENSMUST00000168531 1347 ntAPPRIS P1 TSL 1 (best) BASIC16.19■□□□□ 0.18
Col7a1Q63870 Gyg-201ENSMUST00000118015 1922 ntAPPRIS ALT2 TSL 1 (best) BASIC16.19■□□□□ 0.18
Col7a1Q63870 Rpl18-ps2-201ENSMUST00000118863 567 ntBASIC16.19■□□□□ 0.18
Col7a1Q63870 Gm11539-201ENSMUST00000119837 557 ntBASIC16.19■□□□□ 0.18
Col7a1Q63870 Gm13436-201ENSMUST00000120418 567 ntBASIC16.19■□□□□ 0.18
Col7a1Q63870 Lsr-201ENSMUST00000001279 2167 ntAPPRIS P3 TSL 1 (best) BASIC16.19■□□□□ 0.18
Col7a1Q63870 Kmt5b-216ENSMUST00000176926 1551 ntAPPRIS ALT2 TSL 5 BASIC16.19■□□□□ 0.18
Col7a1Q63870 H1f0-201ENSMUST00000180086 2287 ntAPPRIS P1 BASIC16.19■□□□□ 0.18
Col7a1Q63870 Pgam1-ps2-201ENSMUST00000117129 765 ntBASIC16.19■□□□□ 0.18
Col7a1Q63870 Scamp4-202ENSMUST00000180350 1271 ntAPPRIS P1 TSL 1 (best) BASIC16.19■□□□□ 0.18
Col7a1Q63870 AC061963.1-203ENSMUST00000213473 453 ntTSL 3 BASIC16.19■□□□□ 0.18
Col7a1Q63870 Arhgap9-204ENSMUST00000219511 2217 ntAPPRIS ALT2 TSL 1 (best) BASIC16.19■□□□□ 0.18
Col7a1Q63870 Tcf7-202ENSMUST00000109071 1742 ntAPPRIS P1 TSL 1 (best) BASIC16.19■□□□□ 0.18
Col7a1Q63870 Mpst-203ENSMUST00000169133 1309 ntAPPRIS P1 TSL 5 BASIC16.19■□□□□ 0.18
Col7a1Q63870 Nsl1-203ENSMUST00000139340 837 ntTSL 1 (best) BASIC16.18■□□□□ 0.18
Col7a1Q63870 Fndc11-201ENSMUST00000050026 1387 ntTSL 1 (best) BASIC16.18■□□□□ 0.18
Col7a1Q63870 AC153962.1-201ENSMUST00000218530 1948 ntBASIC16.18■□□□□ 0.18
Col7a1Q63870 Trim54-201ENSMUST00000013771 1434 ntAPPRIS P2 TSL 1 (best) BASIC16.18■□□□□ 0.18
Col7a1Q63870 1810010H24Rik-201ENSMUST00000106767 1100 ntAPPRIS P2 TSL 2 BASIC16.18■□□□□ 0.18
Col7a1Q63870 Zmynd19-202ENSMUST00000148042 1103 ntTSL 1 (best) BASIC16.18■□□□□ 0.18
Col7a1Q63870 Sct-202ENSMUST00000167790 507 ntAPPRIS P3 TSL 1 (best) BASIC16.18■□□□□ 0.18
Col7a1Q63870 Sct-201ENSMUST00000046156 534 ntAPPRIS ALT2 TSL 1 (best) BASIC16.18■□□□□ 0.18
Col7a1Q63870 Unc50-201ENSMUST00000027285 1414 ntAPPRIS P1 TSL 1 (best) BASIC16.18■□□□□ 0.18
Col7a1Q63870 AC159205.6-201ENSMUST00000224935 887 ntBASIC16.18■□□□□ 0.18
Col7a1Q63870 Zbtb7a-204ENSMUST00000121840 1676 ntTSL 1 (best) BASIC16.18■□□□□ 0.18
Col7a1Q63870 Csnk1a1-207ENSMUST00000166990 1860 ntTSL 5 BASIC16.18■□□□□ 0.18
Col7a1Q63870 Cacybp-201ENSMUST00000014370 2098 ntAPPRIS P1 TSL 1 (best) BASIC16.17■□□□□ 0.18
Col7a1Q63870 Dedd2-202ENSMUST00000205271 1942 ntAPPRIS P1 TSL 5 BASIC16.17■□□□□ 0.18
Col7a1Q63870 Polr1d-202ENSMUST00000110557 1137 ntTSL 1 (best) BASIC16.17■□□□□ 0.18
Col7a1Q63870 Spata25-201ENSMUST00000017911 786 ntAPPRIS P1 TSL 1 (best) BASIC16.17■□□□□ 0.18
Col7a1Q63870 Prr3-201ENSMUST00000055454 2727 ntAPPRIS P3 TSL 1 (best) BASIC16.17■□□□□ 0.18
Col7a1Q63870 Mall-201ENSMUST00000028856 2006 ntAPPRIS P1 TSL 1 (best) BASIC16.17■□□□□ 0.18
Col7a1Q63870 Ube2t-201ENSMUST00000027687 1116 ntAPPRIS P1 TSL 1 (best) BASIC16.17■□□□□ 0.18
Col7a1Q63870 Lmbr1-207ENSMUST00000200564 1598 ntTSL 5 BASIC16.16■□□□□ 0.18
Col7a1Q63870 Morf4l1-202ENSMUST00000169860 1824 ntAPPRIS P1 TSL 1 (best) BASIC16.16■□□□□ 0.18
Col7a1Q63870 K230010J24Rik-204ENSMUST00000187868 1810 ntAPPRIS P1 TSL 5 BASIC16.16■□□□□ 0.18
Col7a1Q63870 Snrnp35-202ENSMUST00000111453 1181 ntAPPRIS P1 TSL 2 BASIC16.16■□□□□ 0.18
Col7a1Q63870 B930094E09Rik-201ENSMUST00000164667 1240 ntAPPRIS P1 BASIC16.16■□□□□ 0.18
Col7a1Q63870 Reep6-207ENSMUST00000186864 2015 ntAPPRIS P3 TSL 1 (best) BASIC16.16■□□□□ 0.18
Col7a1Q63870 Auh-201ENSMUST00000021913 1320 ntAPPRIS P1 TSL 1 (best) BASIC16.16■□□□□ 0.18
Col7a1Q63870 Igfbp3-202ENSMUST00000135887 1709 ntAPPRIS P1 TSL 1 (best) BASIC16.16■□□□□ 0.18
Col7a1Q63870 Fam57a-201ENSMUST00000094014 2130 ntAPPRIS P1 TSL 1 (best) BASIC16.16■□□□□ 0.18
Col7a1Q63870 Cerkl-205ENSMUST00000143974 1623 ntAPPRIS P1 TSL 1 (best) BASIC16.16■□□□□ 0.18
Col7a1Q63870 Spint2-202ENSMUST00000108236 1211 ntTSL 1 (best) BASIC16.16■□□□□ 0.18
Col7a1Q63870 Gm15847-201ENSMUST00000121417 1065 ntBASIC16.16■□□□□ 0.18
Col7a1Q63870 C030037D09Rik-202ENSMUST00000136201 1216 ntTSL 1 (best) BASIC16.16■□□□□ 0.18
Col7a1Q63870 Rpl21-203ENSMUST00000099272 1067 ntAPPRIS P1 TSL 3 BASIC16.16■□□□□ 0.18
Col7a1Q63870 Gm1673-202ENSMUST00000114382 451 ntAPPRIS ALT2 TSL 2 BASIC16.15■□□□□ 0.18
Col7a1Q63870 Gm15952-201ENSMUST00000122858 490 ntTSL 3 BASIC16.15■□□□□ 0.18
Col7a1Q63870 Fgf9-202ENSMUST00000074654 1198 ntTSL 1 (best) BASIC16.15■□□□□ 0.18
Col7a1Q63870 Rbm38-201ENSMUST00000029014 1768 ntAPPRIS P1 TSL 1 (best) BASIC16.15■□□□□ 0.18
Col7a1Q63870 Gm14859-201ENSMUST00000117752 357 ntBASIC16.15■□□□□ 0.18
Col7a1Q63870 Gm20635-201ENSMUST00000176473 1287 ntTSL 1 (best) BASIC16.15■□□□□ 0.18
Col7a1Q63870 Ung-201ENSMUST00000031587 1985 ntAPPRIS ALT2 TSL 1 (best) BASIC16.15■□□□□ 0.18
Col7a1Q63870 Zbtb7a-203ENSMUST00000119606 1841 ntAPPRIS P1 TSL 1 (best) BASIC16.15■□□□□ 0.18
Col7a1Q63870 Grasp-201ENSMUST00000000543 2013 ntAPPRIS P1 TSL 1 (best) BASIC16.15■□□□□ 0.18
Col7a1Q63870 Igfbp2-201ENSMUST00000047328 1307 ntAPPRIS P1 TSL 1 (best) BASIC16.15■□□□□ 0.18
Col7a1Q63870 Sstr4-201ENSMUST00000109962 1424 ntAPPRIS P1 BASIC16.15■□□□□ 0.18
Col7a1Q63870 Olfm1-201ENSMUST00000028177 2757 ntAPPRIS P1 TSL 1 (best) BASIC16.15■□□□□ 0.18
Col7a1Q63870 Gm26709-203ENSMUST00000223260 715 ntTSL 5 BASIC16.15■□□□□ 0.18
Col7a1Q63870 Nit1-202ENSMUST00000111295 1335 ntAPPRIS P3 TSL 1 (best) BASIC16.14■□□□□ 0.18
Col7a1Q63870 Doc2g-201ENSMUST00000025806 1446 ntAPPRIS P1 TSL 1 (best) BASIC16.14■□□□□ 0.17
Col7a1Q63870 AA543186-201ENSMUST00000180841 1696 ntTSL 1 (best) BASIC16.14■□□□□ 0.17
Col7a1Q63870 Gm32031-203ENSMUST00000208993 649 ntTSL 2 BASIC16.14■□□□□ 0.17
Col7a1Q63870 AC130713.1-201ENSMUST00000228853 1096 ntBASIC16.14■□□□□ 0.17
Col7a1Q63870 Grp-201ENSMUST00000025395 862 ntAPPRIS P2 TSL 1 (best) BASIC16.14■□□□□ 0.17
Col7a1Q63870 Morf4l1-201ENSMUST00000085248 1882 ntTSL 1 (best) BASIC16.14■□□□□ 0.17
Col7a1Q63870 Psen2-202ENSMUST00000111104 1475 ntAPPRIS ALT1 TSL 1 (best) BASIC16.14■□□□□ 0.17
Col7a1Q63870 En1-201ENSMUST00000079721 2624 ntAPPRIS P1 TSL 1 (best) BASIC16.14■□□□□ 0.17
Col7a1Q63870 Gm13158-201ENSMUST00000122007 736 ntBASIC16.14■□□□□ 0.17
Col7a1Q63870 Gm44549-201ENSMUST00000208351 577 ntBASIC16.14■□□□□ 0.17
Col7a1Q63870 Srsf10-203ENSMUST00000102544 2225 ntTSL 1 (best) BASIC16.14■□□□□ 0.17
Col7a1Q63870 Metap1-201ENSMUST00000029804 2686 ntAPPRIS P1 TSL 1 (best) BASIC16.14■□□□□ 0.17
Col7a1Q63870 Cnp-201ENSMUST00000103120 2357 ntAPPRIS P1 TSL 1 (best) BASIC16.13■□□□□ 0.17
Col7a1Q63870 Vti1b-201ENSMUST00000055262 1490 ntAPPRIS P1 TSL 1 (best) BASIC16.13■□□□□ 0.17
Col7a1Q63870 Larp1b-206ENSMUST00000191872 1505 ntAPPRIS ALT2 TSL 1 (best) BASIC16.13■□□□□ 0.17
Col7a1Q63870 Ccnd2-204ENSMUST00000201637 1006 ntTSL 1 (best) BASIC16.13■□□□□ 0.17
Col7a1Q63870 Snap91-203ENSMUST00000074501 2577 ntAPPRIS ALT2 TSL 1 (best) BASIC16.13■□□□□ 0.17
Col7a1Q63870 Dvl1-208ENSMUST00000168552 2776 ntAPPRIS P1 TSL 1 (best) BASIC16.13■□□□□ 0.17
Col7a1Q63870 Rint1-204ENSMUST00000117783 560 ntTSL 1 (best) BASIC16.13■□□□□ 0.17
Col7a1Q63870 Mrpl21-201ENSMUST00000025743 802 ntAPPRIS ALT2 TSL 1 (best) BASIC16.13■□□□□ 0.17
Col7a1Q63870 Bend6-201ENSMUST00000062289 2487 ntAPPRIS P1 TSL 1 (best) BASIC16.13■□□□□ 0.17
Col7a1Q63870 Tma7-201ENSMUST00000167504 944 ntAPPRIS P1 TSL 1 (best) BASIC16.12■□□□□ 0.17
Col7a1Q63870 Rpp25l-201ENSMUST00000038434 856 ntAPPRIS P1 TSL 1 (best) BASIC16.12■□□□□ 0.17
Col7a1Q63870 Krtap1-4-201ENSMUST00000100479 593 ntAPPRIS P1 BASIC16.12■□□□□ 0.17
Col7a1Q63870 Vps37b-201ENSMUST00000040967 2522 ntAPPRIS P1 TSL 1 (best) BASIC16.12■□□□□ 0.17
Col7a1Q63870 Gm3164-201ENSMUST00000168866 1945 ntAPPRIS P1 TSL 5 BASIC16.12■□□□□ 0.17
Col7a1Q63870 Meis3-201ENSMUST00000002495 1731 ntAPPRIS P1 TSL 1 (best) BASIC16.12■□□□□ 0.17
Col7a1Q63870 Hist1h2bj-201ENSMUST00000110452 463 ntAPPRIS P1 BASIC16.12■□□□□ 0.17
Col7a1Q63870 Hist1h2bp-202ENSMUST00000110473 621 ntTSL 1 (best) BASIC16.12■□□□□ 0.17
Col7a1Q63870 Rpl19-ps10-201ENSMUST00000205555 330 ntBASIC16.12■□□□□ 0.17
Col7a1Q63870 Tmem14c-201ENSMUST00000021790 914 ntAPPRIS P1 TSL 1 (best) BASIC16.12■□□□□ 0.17
Col7a1Q63870 Hist1h2bm-201ENSMUST00000224651 524 ntAPPRIS P1 BASIC16.12■□□□□ 0.17
Retrieved 100 of 76,532 protein–RNA pairs in 15.7 ms