Protein–RNA interactions for Protein: Q62226

Shh, Sonic hedgehog protein, mousemouse

Predictions only

Length 437 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
ShhQ62226 Prr29-201ENSMUST00000009354 1112 ntTSL 1 (best) BASIC17.8■□□□□ 0.44
ShhQ62226 Rbm7-201ENSMUST00000170000 1773 ntAPPRIS P1 TSL 1 (best) BASIC17.8■□□□□ 0.44
ShhQ62226 Syt5-201ENSMUST00000065957 1750 ntAPPRIS P1 TSL 1 (best) BASIC17.8■□□□□ 0.44
ShhQ62226 Dcbld1-203ENSMUST00000218582 2795 ntTSL 1 (best) BASIC17.8■□□□□ 0.44
ShhQ62226 Cdk8-201ENSMUST00000031640 2973 ntAPPRIS P1 TSL 2 BASIC17.8■□□□□ 0.44
ShhQ62226 Gm16933-201ENSMUST00000141741 2169 ntTSL 1 (best) BASIC17.8■□□□□ 0.44
ShhQ62226 Atoh8-201ENSMUST00000042646 2355 ntAPPRIS P1 TSL 1 (best) BASIC17.8■□□□□ 0.44
ShhQ62226 Parp12-201ENSMUST00000038398 3231 ntAPPRIS P1 TSL 1 (best) BASIC17.79■□□□□ 0.44
ShhQ62226 Pbx1-206ENSMUST00000176790 1828 ntTSL 1 (best) BASIC17.79■□□□□ 0.44
ShhQ62226 Mgll-202ENSMUST00000113581 1308 ntTSL 5 BASIC17.79■□□□□ 0.44
ShhQ62226 Tial1-209ENSMUST00000141126 1344 ntTSL 5 BASIC17.79■□□□□ 0.44
ShhQ62226 Gm11627-201ENSMUST00000107080 585 ntAPPRIS P1 TSL 1 (best) BASIC17.79■□□□□ 0.44
ShhQ62226 Gm10653-202ENSMUST00000139570 835 ntBASIC17.79■□□□□ 0.44
ShhQ62226 Spaca1-201ENSMUST00000029927 1197 ntAPPRIS P3 TSL 1 (best) BASIC17.79■□□□□ 0.44
ShhQ62226 Sds-201ENSMUST00000066540 1207 ntAPPRIS P1 TSL 1 (best) BASIC17.79■□□□□ 0.44
ShhQ62226 Spaca1-202ENSMUST00000084734 1149 ntAPPRIS ALT2 TSL 1 (best) BASIC17.79■□□□□ 0.44
ShhQ62226 Krtap5-3-202ENSMUST00000187512 1652 ntAPPRIS P2 BASIC17.79■□□□□ 0.44
ShhQ62226 AC161052.2-201ENSMUST00000220969 1375 ntTSL 5 BASIC17.79■□□□□ 0.44
ShhQ62226 Dvl3-203ENSMUST00000171572 2493 ntTSL 1 (best) BASIC17.78■□□□□ 0.44
ShhQ62226 Mprip-201ENSMUST00000066330 7765 ntAPPRIS ALT2 TSL 5 BASIC17.78■□□□□ 0.44
ShhQ62226 Gm29394-202ENSMUST00000176935 1326 ntAPPRIS P5 TSL 2 BASIC17.78■□□□□ 0.44
ShhQ62226 Dgat1-201ENSMUST00000023214 1888 ntAPPRIS P1 TSL 1 (best) BASIC17.78■□□□□ 0.44
ShhQ62226 Gm20621-202ENSMUST00000176618 1234 ntTSL 1 (best) BASIC17.78■□□□□ 0.44
ShhQ62226 Gm10252-201ENSMUST00000209541 832 ntBASIC17.78■□□□□ 0.44
ShhQ62226 D130020L05Rik-202ENSMUST00000220889 769 ntTSL 3 BASIC17.78■□□□□ 0.44
ShhQ62226 Mylip-201ENSMUST00000038275 3065 ntAPPRIS P1 TSL 1 (best) BASIC17.78■□□□□ 0.44
ShhQ62226 D030062O11Rik-201ENSMUST00000192660 2806 ntBASIC17.78■□□□□ 0.44
ShhQ62226 Rrad-201ENSMUST00000034351 1577 ntAPPRIS P1 TSL 1 (best) BASIC17.78■□□□□ 0.44
ShhQ62226 Gm26682-201ENSMUST00000180850 1729 ntTSL 1 (best) BASIC17.78■□□□□ 0.44
ShhQ62226 Rasgef1a-201ENSMUST00000164960 3284 ntAPPRIS ALT2 TSL 5 BASIC17.78■□□□□ 0.44
ShhQ62226 Pex16-201ENSMUST00000028650 1392 ntAPPRIS P1 TSL 1 (best) BASIC17.78■□□□□ 0.44
ShhQ62226 Ly6h-204ENSMUST00000127095 1336 ntAPPRIS P3 TSL 1 (best) BASIC17.77■□□□□ 0.44
ShhQ62226 Cradd-205ENSMUST00000220279 1613 ntAPPRIS P1 TSL 1 (best) BASIC17.77■□□□□ 0.44
ShhQ62226 Ccnd3-218ENSMUST00000183177 2060 ntAPPRIS P1 TSL 5 BASIC17.77■□□□□ 0.44
ShhQ62226 1700125G02Rik-201ENSMUST00000154947 519 ntTSL 1 (best) BASIC17.77■□□□□ 0.44
ShhQ62226 Wdr4-203ENSMUST00000167419 813 ntTSL 3 BASIC17.77■□□□□ 0.44
ShhQ62226 P4hb-203ENSMUST00000168360 770 ntTSL 3 BASIC17.77■□□□□ 0.44
ShhQ62226 Lrfn4-201ENSMUST00000053597 3194 ntAPPRIS P1 TSL 1 (best) BASIC17.77■□□□□ 0.44
ShhQ62226 Mreg-201ENSMUST00000048860 2284 ntAPPRIS P1 TSL 1 (best) BASIC17.77■□□□□ 0.43
ShhQ62226 Prmt8-201ENSMUST00000032500 2724 ntAPPRIS P1 TSL 1 (best) BASIC17.77■□□□□ 0.43
ShhQ62226 Lmtk3-204ENSMUST00000209617 5051 ntAPPRIS ALT2 TSL 1 (best) BASIC17.76■□□□□ 0.43
ShhQ62226 Gm38399-201ENSMUST00000112103 1645 ntTSL 2 BASIC17.76■□□□□ 0.43
ShhQ62226 Sephs1-202ENSMUST00000115019 2933 ntAPPRIS P1 TSL 1 (best) BASIC17.76■□□□□ 0.43
ShhQ62226 Grtp1-207ENSMUST00000211128 1416 ntTSL 1 (best) BASIC17.76■□□□□ 0.43
ShhQ62226 Kctd17-206ENSMUST00000162517 901 ntAPPRIS P4 TSL 1 (best) BASIC17.76■□□□□ 0.43
ShhQ62226 Kctd17-209ENSMUST00000166142 826 ntAPPRIS ALT2 TSL 1 (best) BASIC17.76■□□□□ 0.43
ShhQ62226 Dlx6-203ENSMUST00000171311 1071 ntAPPRIS P1 TSL 1 (best) BASIC17.76■□□□□ 0.43
ShhQ62226 Rabac1-203ENSMUST00000205871 986 ntTSL 1 (best) BASIC17.76■□□□□ 0.43
ShhQ62226 H2-Ab1-201ENSMUST00000040828 1211 ntAPPRIS P1 TSL 1 (best) BASIC17.76■□□□□ 0.43
ShhQ62226 Adssl1-202ENSMUST00000180015 1819 ntTSL 1 (best) BASIC17.76■□□□□ 0.43
ShhQ62226 Deptor-203ENSMUST00000100660 1377 ntTSL 1 (best) BASIC17.76■□□□□ 0.43
ShhQ62226 Spg7-211ENSMUST00000153285 2481 ntAPPRIS ALT2 TSL 5 BASIC17.76■□□□□ 0.43
ShhQ62226 Syt17-203ENSMUST00000203485 1932 ntTSL 1 (best) BASIC17.76■□□□□ 0.43
ShhQ62226 Uba2-201ENSMUST00000102746 2579 ntAPPRIS P1 TSL 1 (best) BASIC17.76■□□□□ 0.43
ShhQ62226 Hnrnpf-202ENSMUST00000163168 2401 ntAPPRIS P1 TSL 1 (best) BASIC17.76■□□□□ 0.43
ShhQ62226 Man1a-203ENSMUST00000105470 2847 ntAPPRIS P1 TSL 5 BASIC17.76■□□□□ 0.43
ShhQ62226 Zmym3-207ENSMUST00000120201 1859 ntTSL 1 (best) BASIC17.75■□□□□ 0.43
ShhQ62226 1810010K12Rik-201ENSMUST00000070378 1324 ntBASIC17.75■□□□□ 0.43
ShhQ62226 Tcf7l1-201ENSMUST00000069536 3042 ntAPPRIS P3 TSL 1 (best) BASIC17.75■□□□□ 0.43
ShhQ62226 Hcn2-201ENSMUST00000020581 3089 ntAPPRIS P1 TSL 5 BASIC17.75■□□□□ 0.43
ShhQ62226 Clta-201ENSMUST00000107845 1031 ntAPPRIS ALT2 TSL 2 BASIC17.75■□□□□ 0.43
ShhQ62226 Gm20760-201ENSMUST00000179197 648 ntBASIC17.75■□□□□ 0.43
ShhQ62226 Flot2-203ENSMUST00000100784 2699 ntTSL 1 (best) BASIC17.75■□□□□ 0.43
ShhQ62226 Gm4969-202ENSMUST00000141380 1892 ntAPPRIS P1 TSL 5 BASIC17.75■□□□□ 0.43
ShhQ62226 Larp1-203ENSMUST00000178636 6617 ntAPPRIS P2 TSL 5 BASIC17.75■□□□□ 0.43
ShhQ62226 2310034G01Rik-201ENSMUST00000189008 1373 ntAPPRIS P1 TSL 5 BASIC17.75■□□□□ 0.43
ShhQ62226 Otud1-201ENSMUST00000052168 2832 ntAPPRIS P1 BASIC17.75■□□□□ 0.43
ShhQ62226 Tekt5-201ENSMUST00000043415 1803 ntAPPRIS ALT2 TSL 1 (best) BASIC17.75■□□□□ 0.43
ShhQ62226 Hsd17b2-201ENSMUST00000034304 1320 ntAPPRIS P1 TSL 1 (best) BASIC17.74■□□□□ 0.43
ShhQ62226 Brpf3-201ENSMUST00000004985 5766 ntAPPRIS P1 TSL 1 (best) BASIC17.74■□□□□ 0.43
ShhQ62226 Rbks-201ENSMUST00000031018 1042 ntAPPRIS P1 TSL 1 (best) BASIC17.74■□□□□ 0.43
ShhQ62226 4930412F12Rik-201ENSMUST00000211700 1471 ntBASIC17.74■□□□□ 0.43
ShhQ62226 Fyn-204ENSMUST00000126486 2495 ntTSL 1 (best) BASIC17.74■□□□□ 0.43
ShhQ62226 Tomm40-202ENSMUST00000093552 1577 ntAPPRIS P1 TSL 1 (best) BASIC17.74■□□□□ 0.43
ShhQ62226 Sort1-203ENSMUST00000135636 6836 ntAPPRIS ALT2 TSL 1 (best) BASIC17.74■□□□□ 0.43
ShhQ62226 Pou2f2-210ENSMUST00000176408 1697 ntTSL 5 BASIC17.74■□□□□ 0.43
ShhQ62226 Ltk-202ENSMUST00000082130 2767 ntAPPRIS ALT2 TSL 1 (best) BASIC17.73■□□□□ 0.43
ShhQ62226 Hsp25-ps1-201ENSMUST00000109187 630 ntBASIC17.73■□□□□ 0.43
ShhQ62226 Mir7071-201ENSMUST00000184847 69 ntBASIC17.73■□□□□ 0.43
ShhQ62226 1700028I16Rik-201ENSMUST00000076984 1048 ntTSL 5 BASIC17.73■□□□□ 0.43
ShhQ62226 Foxf2-201ENSMUST00000042054 2363 ntAPPRIS P1 TSL 1 (best) BASIC17.73■□□□□ 0.43
ShhQ62226 Eml4-203ENSMUST00000112363 5238 ntAPPRIS ALT2 TSL 1 (best) BASIC17.73■□□□□ 0.43
ShhQ62226 Htatip2-202ENSMUST00000207895 1338 ntAPPRIS ALT2 TSL 1 (best) BASIC17.72■□□□□ 0.43
ShhQ62226 Dhx33-204ENSMUST00000124464 1835 ntTSL 5 BASIC17.72■□□□□ 0.43
ShhQ62226 Lrp8-204ENSMUST00000106733 3332 ntAPPRIS ALT2 TSL 5 BASIC17.72■□□□□ 0.43
ShhQ62226 Rab7-205ENSMUST00000113600 2159 ntAPPRIS P1 TSL 1 (best) BASIC17.72■□□□□ 0.43
ShhQ62226 Sox17-208ENSMUST00000195555 1977 ntTSL 5 BASIC17.72■□□□□ 0.43
ShhQ62226 Impa2-201ENSMUST00000025403 1661 ntAPPRIS P1 TSL 1 (best) BASIC17.72■□□□□ 0.43
ShhQ62226 Tmem203-201ENSMUST00000104998 854 ntAPPRIS P1 BASIC17.72■□□□□ 0.43
ShhQ62226 Aurkaip1-203ENSMUST00000105592 1029 ntAPPRIS P1 TSL 2 BASIC17.72■□□□□ 0.43
ShhQ62226 Chrac1-202ENSMUST00000134353 538 ntAPPRIS ALT2 TSL 2 BASIC17.72■□□□□ 0.43
ShhQ62226 Fgf22-203ENSMUST00000219981 1070 ntTSL 1 (best) BASIC17.72■□□□□ 0.43
ShhQ62226 Ntsr2-202ENSMUST00000220892 846 ntTSL 3 BASIC17.72■□□□□ 0.43
ShhQ62226 Tmem147-201ENSMUST00000006478 870 ntAPPRIS P1 TSL 1 (best) BASIC17.72■□□□□ 0.43
ShhQ62226 Cers2-201ENSMUST00000015858 2216 ntAPPRIS P1 TSL 1 (best) BASIC17.72■□□□□ 0.43
ShhQ62226 Dtx4-201ENSMUST00000045521 5765 ntAPPRIS P1 TSL 1 (best) BASIC17.72■□□□□ 0.43
ShhQ62226 Snx21-206ENSMUST00000174070 1446 ntTSL 5 BASIC17.72■□□□□ 0.43
ShhQ62226 Rce1-201ENSMUST00000025823 1402 ntAPPRIS P1 TSL 1 (best) BASIC17.72■□□□□ 0.43
ShhQ62226 Pafah1b1-201ENSMUST00000021091 5803 ntAPPRIS P1 TSL 1 (best) BASIC17.71■□□□□ 0.43
ShhQ62226 Supv3l1-201ENSMUST00000020273 2604 ntAPPRIS P1 TSL 1 (best) BASIC17.71■□□□□ 0.43
Retrieved 100 of 76,532 protein–RNA pairs in 19.1 ms