Protein–RNA interactions for Protein: Q05722

Col9a1, Collagen alpha-1(IX) chain, mousemouse

Predictions only

Length 921 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Col9a1Q05722 Hoxa11os-201ENSMUST00000134512 1839 ntTSL 1 (best) BASIC18.91■□□□□ 0.62
Col9a1Q05722 Cdkl3-205ENSMUST00000109078 2216 ntAPPRIS ALT2 TSL 1 (best) BASIC18.91■□□□□ 0.62
Col9a1Q05722 Gm2399-201ENSMUST00000104944 225 ntBASIC18.91■□□□□ 0.62
Col9a1Q05722 Gm11527-201ENSMUST00000153795 596 ntTSL 2 BASIC18.91■□□□□ 0.62
Col9a1Q05722 Mir6236-201ENSMUST00000184437 123 ntBASIC18.91■□□□□ 0.62
Col9a1Q05722 Tmem14c-201ENSMUST00000021790 914 ntAPPRIS P1 TSL 1 (best) BASIC18.91■□□□□ 0.62
Col9a1Q05722 1700065D16Rik-204ENSMUST00000189348 1540 ntTSL 2 BASIC18.9■□□□□ 0.62
Col9a1Q05722 A230087F16Rik-201ENSMUST00000181055 2098 ntTSL 1 (best) BASIC18.9■□□□□ 0.62
Col9a1Q05722 Gm45618-201ENSMUST00000209890 660 ntAPPRIS P1 BASIC18.9■□□□□ 0.62
Col9a1Q05722 Arhgef4-208ENSMUST00000211073 171 ntBASIC18.9■□□□□ 0.62
Col9a1Q05722 Psmd4-202ENSMUST00000107237 1332 ntAPPRIS P3 TSL 1 (best) BASIC18.9■□□□□ 0.62
Col9a1Q05722 Pou2f2-204ENSMUST00000108416 1754 ntTSL 1 (best) BASIC18.9■□□□□ 0.62
Col9a1Q05722 Akt1s1-204ENSMUST00000107885 1812 ntAPPRIS ALT2 TSL 1 (best) BASIC18.9■□□□□ 0.62
Col9a1Q05722 Plpbp-202ENSMUST00000098851 1368 ntTSL 1 (best) BASIC18.9■□□□□ 0.62
Col9a1Q05722 Alas2-201ENSMUST00000066337 2037 ntAPPRIS P3 TSL 1 (best) BASIC18.9■□□□□ 0.62
Col9a1Q05722 Ildr2-203ENSMUST00000192638 2587 ntAPPRIS ALT2 TSL 1 (best) BASIC18.89■□□□□ 0.62
Col9a1Q05722 Lpin2-213ENSMUST00000156570 1586 ntTSL 1 (best) BASIC18.89■□□□□ 0.62
Col9a1Q05722 Fam220a-204ENSMUST00000119488 2202 ntTSL 1 (best) BASIC18.89■□□□□ 0.61
Col9a1Q05722 Fam220a-209ENSMUST00000200267 2202 ntAPPRIS P1 TSL 1 (best) BASIC18.89■□□□□ 0.61
Col9a1Q05722 Pth1r-201ENSMUST00000006005 2307 ntAPPRIS P1 TSL 1 (best) BASIC18.89■□□□□ 0.61
Col9a1Q05722 Gm43403-201ENSMUST00000198011 1786 ntBASIC18.89■□□□□ 0.61
Col9a1Q05722 Arnt-204ENSMUST00000107160 783 ntTSL 1 (best) BASIC18.89■□□□□ 0.61
Col9a1Q05722 Bex1-203ENSMUST00000113120 718 ntAPPRIS P1 TSL 3 BASIC18.89■□□□□ 0.61
Col9a1Q05722 Pld6-202ENSMUST00000125307 948 ntAPPRIS P1 TSL 1 (best) BASIC18.89■□□□□ 0.61
Col9a1Q05722 Gm43183-201ENSMUST00000200632 547 ntBASIC18.89■□□□□ 0.61
Col9a1Q05722 Gm21814-202ENSMUST00000203277 873 ntBASIC18.89■□□□□ 0.61
Col9a1Q05722 Uchl1-201ENSMUST00000031131 1177 ntAPPRIS P1 TSL 1 (best) BASIC18.89■□□□□ 0.61
Col9a1Q05722 Chpt1-202ENSMUST00000073783 852 ntAPPRIS ALT2 TSL 1 (best) BASIC18.89■□□□□ 0.61
Col9a1Q05722 Tusc3-203ENSMUST00000209440 1535 ntAPPRIS P1 TSL 1 (best) BASIC18.89■□□□□ 0.61
Col9a1Q05722 Sos2-201ENSMUST00000035773 5607 ntAPPRIS P2 TSL 5 BASIC18.88■□□□□ 0.61
Col9a1Q05722 Ptf1aos-201ENSMUST00000122978 916 ntTSL 1 (best) BASIC18.88■□□□□ 0.61
Col9a1Q05722 Kcnn4-203ENSMUST00000205626 461 ntTSL 5 BASIC18.88■□□□□ 0.61
Col9a1Q05722 Umpk-ps-201ENSMUST00000211897 827 ntBASIC18.88■□□□□ 0.61
Col9a1Q05722 Nudt14-202ENSMUST00000221397 1241 ntAPPRIS P1 TSL 1 (best) BASIC18.88■□□□□ 0.61
Col9a1Q05722 Gm5913-201ENSMUST00000119397 1399 ntBASIC18.88■□□□□ 0.61
Col9a1Q05722 Ssbp2-202ENSMUST00000042122 1633 ntTSL 1 (best) BASIC18.88■□□□□ 0.61
Col9a1Q05722 Slc35a2-201ENSMUST00000096514 1757 ntTSL 5 BASIC18.88■□□□□ 0.61
Col9a1Q05722 Gm960-204ENSMUST00000225896 2202 ntAPPRIS ALT2 BASIC18.88■□□□□ 0.61
Col9a1Q05722 Elf2-203ENSMUST00000108051 2514 ntTSL 1 (best) BASIC18.87■□□□□ 0.61
Col9a1Q05722 Bad-202ENSMUST00000113423 990 ntAPPRIS ALT2 TSL 1 (best) BASIC18.87■□□□□ 0.61
Col9a1Q05722 Slc35a2-203ENSMUST00000115663 1527 ntAPPRIS P4 TSL 2 BASIC18.87■□□□□ 0.61
Col9a1Q05722 Cdk19os-202ENSMUST00000143103 1124 ntTSL 1 (best) BASIC18.87■□□□□ 0.61
Col9a1Q05722 Fbxo9-203ENSMUST00000159099 1201 ntTSL 1 (best) BASIC18.87■□□□□ 0.61
Col9a1Q05722 Nisch-222ENSMUST00000172142 2780 ntAPPRIS ALT2 TSL 1 (best) BASIC18.87■□□□□ 0.61
Col9a1Q05722 Gm28033-201ENSMUST00000184224 96 ntBASIC18.87■□□□□ 0.61
Col9a1Q05722 AC175538.1-201ENSMUST00000225343 1269 ntBASIC18.87■□□□□ 0.61
Col9a1Q05722 Dtymk-201ENSMUST00000027503 1003 ntAPPRIS P1 TSL 1 (best) BASIC18.87■□□□□ 0.61
Col9a1Q05722 Irak1bp1-201ENSMUST00000034783 1159 ntTSL 1 (best) BASIC18.87■□□□□ 0.61
Col9a1Q05722 Grcc10-201ENSMUST00000004389 863 ntAPPRIS P1 TSL 1 (best) BASIC18.87■□□□□ 0.61
Col9a1Q05722 Gm9803-201ENSMUST00000057649 563 ntAPPRIS P1 BASIC18.87■□□□□ 0.61
Col9a1Q05722 Faap20-201ENSMUST00000097747 1479 ntAPPRIS ALT2 TSL 1 (best) BASIC18.87■□□□□ 0.61
Col9a1Q05722 Mid2-201ENSMUST00000112988 2525 ntTSL 5 BASIC18.87■□□□□ 0.61
Col9a1Q05722 Grm2-203ENSMUST00000201681 2111 ntTSL 1 (best) BASIC18.86■□□□□ 0.61
Col9a1Q05722 Porcn-202ENSMUST00000082320 1883 ntAPPRIS ALT1 TSL 1 (best) BASIC18.86■□□□□ 0.61
Col9a1Q05722 Prpsap2-204ENSMUST00000168115 1771 ntAPPRIS P1 TSL 1 (best) BASIC18.86■□□□□ 0.61
Col9a1Q05722 Cisd2-202ENSMUST00000120988 1363 ntTSL 1 (best) BASIC18.86■□□□□ 0.61
Col9a1Q05722 Gm15847-201ENSMUST00000121417 1065 ntBASIC18.86■□□□□ 0.61
Col9a1Q05722 Hrh3-204ENSMUST00000165248 1224 ntAPPRIS ALT2 TSL 5 BASIC18.86■□□□□ 0.61
Col9a1Q05722 1700019N19Rik-201ENSMUST00000028299 970 ntAPPRIS P2 TSL 1 (best) BASIC18.86■□□□□ 0.61
Col9a1Q05722 Mrps6-201ENSMUST00000047429 846 ntAPPRIS P1 TSL 1 (best) BASIC18.86■□□□□ 0.61
Col9a1Q05722 Slc35f4-204ENSMUST00000138884 1810 ntTSL 1 (best) BASIC18.86■□□□□ 0.61
Col9a1Q05722 Ppp1cc-202ENSMUST00000102528 2384 ntAPPRIS P1 TSL 1 (best) BASIC18.85■□□□□ 0.61
Col9a1Q05722 Mob2-201ENSMUST00000084418 1490 ntAPPRIS P2 TSL 1 (best) BASIC18.85■□□□□ 0.61
Col9a1Q05722 Barhl1-202ENSMUST00000113847 2160 ntAPPRIS P1 TSL 1 (best) BASIC18.85■□□□□ 0.61
Col9a1Q05722 Tsc22d1-204ENSMUST00000110888 4999 ntTSL 1 (best) BASIC18.85■□□□□ 0.61
Col9a1Q05722 Cdkn1c-201ENSMUST00000037287 1901 ntAPPRIS P3 TSL 1 (best) BASIC18.85■□□□□ 0.61
Col9a1Q05722 Bicdl2-201ENSMUST00000062967 1913 ntAPPRIS P1 TSL 1 (best) BASIC18.85■□□□□ 0.61
Col9a1Q05722 Spint2-202ENSMUST00000108236 1211 ntTSL 1 (best) BASIC18.85■□□□□ 0.61
Col9a1Q05722 Gm15545-202ENSMUST00000141011 899 ntTSL 3 BASIC18.85■□□□□ 0.61
Col9a1Q05722 Adssl1-202ENSMUST00000180015 1819 ntTSL 1 (best) BASIC18.85■□□□□ 0.61
Col9a1Q05722 Wnt2-201ENSMUST00000010941 2255 ntAPPRIS P1 TSL 1 (best) BASIC18.85■□□□□ 0.61
Col9a1Q05722 Rmnd5a-201ENSMUST00000002292 6165 ntAPPRIS P1 TSL 1 (best) BASIC18.85■□□□□ 0.61
Col9a1Q05722 Bin1-202ENSMUST00000091967 2118 ntAPPRIS ALT2 TSL 1 (best) BASIC18.85■□□□□ 0.61
Col9a1Q05722 Trim3-203ENSMUST00000106791 2466 ntTSL 1 (best) BASIC18.84■□□□□ 0.61
Col9a1Q05722 Fndc11-201ENSMUST00000050026 1387 ntTSL 1 (best) BASIC18.84■□□□□ 0.61
Col9a1Q05722 Fez1-201ENSMUST00000034630 1794 ntAPPRIS P1 TSL 1 (best) BASIC18.84■□□□□ 0.61
Col9a1Q05722 B630019K06Rik-201ENSMUST00000064196 2583 ntAPPRIS P1 BASIC18.84■□□□□ 0.61
Col9a1Q05722 Gm37935-201ENSMUST00000192012 982 ntBASIC18.84■□□□□ 0.61
Col9a1Q05722 Aldoa-ps3-201ENSMUST00000217558 306 ntBASIC18.84■□□□□ 0.61
Col9a1Q05722 Cenpp-201ENSMUST00000021818 1144 ntAPPRIS P1 TSL 1 (best) BASIC18.84■□□□□ 0.61
Col9a1Q05722 Tmem242-201ENSMUST00000005053 948 ntAPPRIS P1 TSL 1 (best) BASIC18.84■□□□□ 0.61
Col9a1Q05722 Pym1-201ENSMUST00000065210 1156 ntAPPRIS ALT2 TSL 1 (best) BASIC18.84■□□□□ 0.61
Col9a1Q05722 Ankrd33b-202ENSMUST00000076942 1641 ntTSL 1 (best) BASIC18.84■□□□□ 0.61
Col9a1Q05722 Ugp2-201ENSMUST00000060895 2044 ntTSL 1 (best) BASIC18.84■□□□□ 0.61
Col9a1Q05722 Dact1-202ENSMUST00000150639 2448 ntAPPRIS P1 TSL 3 BASIC18.84■□□□□ 0.61
Col9a1Q05722 Rpf2-201ENSMUST00000045114 1853 ntTSL 1 (best) BASIC18.84■□□□□ 0.61
Col9a1Q05722 Cd320-201ENSMUST00000002379 2209 ntAPPRIS P3 TSL 1 (best) BASIC18.84■□□□□ 0.61
Col9a1Q05722 Morf4l1-202ENSMUST00000169860 1824 ntAPPRIS P1 TSL 1 (best) BASIC18.84■□□□□ 0.61
Col9a1Q05722 Fbxo24-201ENSMUST00000031732 2161 ntAPPRIS P1 TSL 1 (best) BASIC18.83■□□□□ 0.61
Col9a1Q05722 Gm8784-201ENSMUST00000222096 1435 ntBASIC18.83■□□□□ 0.61
Col9a1Q05722 P4ha3-201ENSMUST00000057023 2361 ntAPPRIS P1 TSL 1 (best) BASIC18.83■□□□□ 0.61
Col9a1Q05722 Ezh2-203ENSMUST00000114616 2670 ntAPPRIS ALT1 TSL 5 BASIC18.83■□□□□ 0.61
Col9a1Q05722 Shc4-202ENSMUST00000110477 1988 ntTSL 1 (best) BASIC18.83■□□□□ 0.61
Col9a1Q05722 Gtf2a2-204ENSMUST00000119905 622 ntTSL 2 BASIC18.83■□□□□ 0.6
Col9a1Q05722 Gm16192-201ENSMUST00000148357 937 ntTSL 1 (best) BASIC18.83■□□□□ 0.6
Col9a1Q05722 Nthl1-201ENSMUST00000047611 1080 ntAPPRIS P1 TSL 1 (best) BASIC18.83■□□□□ 0.6
Col9a1Q05722 Gm20387-201ENSMUST00000173609 1783 ntTSL 1 (best) BASIC18.83■□□□□ 0.6
Col9a1Q05722 Tmprss5-205ENSMUST00000170246 1491 ntAPPRIS ALT2 TSL 1 (best) BASIC18.83■□□□□ 0.6
Col9a1Q05722 Trim14-201ENSMUST00000046897 1429 ntAPPRIS P1 TSL 1 (best) BASIC18.83■□□□□ 0.6
Col9a1Q05722 Dyrk1b-202ENSMUST00000172467 2523 ntTSL 1 (best) BASIC18.82■□□□□ 0.6
Retrieved 100 of 76,532 protein–RNA pairs in 26.8 ms