Protein–RNA interactions for Protein: P27548

Cd40lg, CD40 ligand, mousemouse

Predictions only

Length 260 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Cd40lgP27548 Cpsf4-202ENSMUST00000160422 1756 ntAPPRIS ALT1 TSL 5 BASIC17.57■□□□□ 0.4
Cd40lgP27548 Nr2f1-201ENSMUST00000091458 3207 ntAPPRIS P1 TSL 1 (best) BASIC17.57■□□□□ 0.4
Cd40lgP27548 Rhov-201ENSMUST00000037360 1703 ntAPPRIS P1 TSL 1 (best) BASIC17.57■□□□□ 0.4
Cd40lgP27548 Slc12a8-204ENSMUST00000121925 2656 ntAPPRIS P2 TSL 5 BASIC17.57■□□□□ 0.4
Cd40lgP27548 Azi2-205ENSMUST00000133580 2156 ntAPPRIS P1 TSL 1 (best) BASIC17.57■□□□□ 0.4
Cd40lgP27548 Nptxr-201ENSMUST00000023057 5004 ntAPPRIS ALT2 TSL 1 (best) BASIC17.57■□□□□ 0.4
Cd40lgP27548 Desi2-204ENSMUST00000161075 2590 ntTSL 1 (best) BASIC17.57■□□□□ 0.4
Cd40lgP27548 Foxo3-204ENSMUST00000175881 2535 ntAPPRIS P1 TSL 1 (best) BASIC17.57■□□□□ 0.4
Cd40lgP27548 Aadat-201ENSMUST00000079472 1972 ntAPPRIS P2 TSL 1 (best) BASIC17.57■□□□□ 0.4
Cd40lgP27548 Cav2-201ENSMUST00000000058 2733 ntAPPRIS P1 TSL 1 (best) BASIC17.56■□□□□ 0.4
Cd40lgP27548 Wrnip1-201ENSMUST00000021832 2633 ntAPPRIS P1 TSL 1 (best) BASIC17.56■□□□□ 0.4
Cd40lgP27548 Pdp1-204ENSMUST00000108299 2588 ntAPPRIS ALT2 TSL 2 BASIC17.56■□□□□ 0.4
Cd40lgP27548 Laptm4a-201ENSMUST00000020909 1773 ntAPPRIS P1 TSL 1 (best) BASIC17.56■□□□□ 0.4
Cd40lgP27548 Cnpy3-202ENSMUST00000121671 561 ntTSL 2 BASIC17.56■□□□□ 0.4
Cd40lgP27548 Gm12660-201ENSMUST00000123764 664 ntTSL 3 BASIC17.56■□□□□ 0.4
Cd40lgP27548 Gm16076-201ENSMUST00000140116 480 ntTSL 3 BASIC17.56■□□□□ 0.4
Cd40lgP27548 Serbp1-216ENSMUST00000205106 1288 ntTSL 5 BASIC17.56■□□□□ 0.4
Cd40lgP27548 Bax-205ENSMUST00000211365 801 ntTSL 3 BASIC17.56■□□□□ 0.4
Cd40lgP27548 Spint1-202ENSMUST00000110816 1913 ntAPPRIS P1 TSL 5 BASIC17.56■□□□□ 0.4
Cd40lgP27548 Zfp467-202ENSMUST00000114556 2287 ntTSL 1 (best) BASIC17.56■□□□□ 0.4
Cd40lgP27548 Zbtb7a-202ENSMUST00000117956 1863 ntAPPRIS P1 TSL 1 (best) BASIC17.56■□□□□ 0.4
Cd40lgP27548 Trak1-208ENSMUST00000210636 2197 ntTSL 1 (best) BASIC17.56■□□□□ 0.4
Cd40lgP27548 Olig1-201ENSMUST00000056882 2162 ntAPPRIS P1 BASIC17.56■□□□□ 0.4
Cd40lgP27548 Kcnip1-201ENSMUST00000065970 1749 ntAPPRIS P1 TSL 1 (best) BASIC17.55■□□□□ 0.4
Cd40lgP27548 Impa2-201ENSMUST00000025403 1661 ntAPPRIS P1 TSL 1 (best) BASIC17.55■□□□□ 0.4
Cd40lgP27548 Abhd8-201ENSMUST00000008094 1978 ntAPPRIS P1 TSL 1 (best) BASIC17.55■□□□□ 0.4
Cd40lgP27548 Crlf3-203ENSMUST00000103233 2230 ntTSL 1 (best) BASIC17.55■□□□□ 0.4
Cd40lgP27548 Akt2-205ENSMUST00000108344 4544 ntAPPRIS P1 TSL 1 (best) BASIC17.55■□□□□ 0.4
Cd40lgP27548 Sox12-201ENSMUST00000063332 4169 ntAPPRIS P1 TSL 2 BASIC17.55■□□□□ 0.4
Cd40lgP27548 Zfp821-201ENSMUST00000034163 2127 ntAPPRIS P1 TSL 1 (best) BASIC17.55■□□□□ 0.4
Cd40lgP27548 Ferd3l-201ENSMUST00000061035 886 ntAPPRIS P1 BASIC17.55■□□□□ 0.4
Cd40lgP27548 Fam149b-204ENSMUST00000090503 2053 ntTSL 1 (best) BASIC17.55■□□□□ 0.4
Cd40lgP27548 Zfp777-202ENSMUST00000114583 3111 ntAPPRIS P3 TSL 5 BASIC17.55■□□□□ 0.4
Cd40lgP27548 Pgam5-201ENSMUST00000059229 2044 ntAPPRIS P3 TSL 1 (best) BASIC17.55■□□□□ 0.4
Cd40lgP27548 Gja3-201ENSMUST00000061614 2766 ntAPPRIS P1 TSL 1 (best) BASIC17.55■□□□□ 0.4
Cd40lgP27548 Snx21-206ENSMUST00000174070 1446 ntTSL 5 BASIC17.55■□□□□ 0.4
Cd40lgP27548 Snx30-201ENSMUST00000030080 7314 ntAPPRIS P1 TSL 1 (best) BASIC17.55■□□□□ 0.4
Cd40lgP27548 Rell2-210ENSMUST00000176104 2150 ntAPPRIS P1 TSL 5 BASIC17.55■□□□□ 0.4
Cd40lgP27548 Zdhhc4-201ENSMUST00000001900 1364 ntAPPRIS P1 TSL 1 (best) BASIC17.54■□□□□ 0.4
Cd40lgP27548 Nus1-201ENSMUST00000023830 4605 ntAPPRIS P1 TSL 1 (best) BASIC17.54■□□□□ 0.4
Cd40lgP27548 Sebox-202ENSMUST00000125670 1300 ntTSL 1 (best) BASIC17.54■□□□□ 0.4
Cd40lgP27548 Fam46a-202ENSMUST00000187711 5648 ntAPPRIS ALT2 TSL 1 (best) BASIC17.54■□□□□ 0.4
Cd40lgP27548 Scrib-203ENSMUST00000109946 5545 ntAPPRIS ALT2 TSL 1 (best) BASIC17.54■□□□□ 0.4
Cd40lgP27548 Tmem230-206ENSMUST00000180286 1531 ntAPPRIS P1 TSL 2 BASIC17.54■□□□□ 0.4
Cd40lgP27548 Ccnd3-201ENSMUST00000037333 1999 ntAPPRIS P1 TSL 1 (best) BASIC17.54■□□□□ 0.4
Cd40lgP27548 Gm37564-201ENSMUST00000195000 330 ntTSL 5 BASIC17.54■□□□□ 0.4
Cd40lgP27548 AC114678.1-201ENSMUST00000219640 622 ntTSL 3 BASIC17.54■□□□□ 0.4
Cd40lgP27548 Cisd1-201ENSMUST00000045887 1084 ntAPPRIS P1 TSL 1 (best) BASIC17.54■□□□□ 0.4
Cd40lgP27548 Tspan17-202ENSMUST00000099503 822 ntAPPRIS ALT1 TSL 5 BASIC17.54■□□□□ 0.4
Cd40lgP27548 Hipk2-206ENSMUST00000161779 7684 ntAPPRIS P3 TSL 1 (best) BASIC17.54■□□□□ 0.4
Cd40lgP27548 Sfmbt2-204ENSMUST00000114864 1901 ntTSL 1 (best) BASIC17.54■□□□□ 0.4
Cd40lgP27548 Sbf1-205ENSMUST00000144585 6165 ntAPPRIS ALT2 TSL 1 (best) BASIC17.54■□□□□ 0.4
Cd40lgP27548 Retreg2-201ENSMUST00000097694 2561 ntAPPRIS P3 TSL 1 (best) BASIC17.54■□□□□ 0.4
Cd40lgP27548 Eri1-201ENSMUST00000033927 5079 ntAPPRIS P1 TSL 1 (best) BASIC17.54■□□□□ 0.4
Cd40lgP27548 Gjc2-201ENSMUST00000108790 2169 ntAPPRIS P1 TSL 1 (best) BASIC17.53■□□□□ 0.4
Cd40lgP27548 Gjc2-202ENSMUST00000108793 2187 ntAPPRIS P1 TSL 1 (best) BASIC17.53■□□□□ 0.4
Cd40lgP27548 Kifc3-201ENSMUST00000034240 3277 ntAPPRIS P4 TSL 1 (best) BASIC17.53■□□□□ 0.4
Cd40lgP27548 Gm9934-201ENSMUST00000098303 2077 ntTSL 1 (best) BASIC17.53■□□□□ 0.4
Cd40lgP27548 Nxph4-201ENSMUST00000095266 1675 ntAPPRIS P1 TSL 1 (best) BASIC17.53■□□□□ 0.4
Cd40lgP27548 Emc6-202ENSMUST00000108480 563 ntAPPRIS P1 TSL 2 BASIC17.53■□□□□ 0.4
Cd40lgP27548 Ppp4r1l-ps-204ENSMUST00000140992 367 ntTSL 3 BASIC17.53■□□□□ 0.4
Cd40lgP27548 Rnf39-202ENSMUST00000173072 631 ntTSL 2 BASIC17.53■□□□□ 0.4
Cd40lgP27548 Igfbp6-201ENSMUST00000023807 1112 ntAPPRIS P1 TSL 1 (best) BASIC17.53■□□□□ 0.4
Cd40lgP27548 Tmem86a-201ENSMUST00000010451 1831 ntAPPRIS P1 TSL 1 (best) BASIC17.53■□□□□ 0.4
Cd40lgP27548 Pcdh7-201ENSMUST00000068110 5611 ntAPPRIS P3 TSL 1 (best) BASIC17.53■□□□□ 0.4
Cd40lgP27548 Anapc5-208ENSMUST00000197719 2383 ntAPPRIS ALT2 TSL 1 (best) BASIC17.53■□□□□ 0.4
Cd40lgP27548 Patz1-203ENSMUST00000094471 2930 ntTSL 1 (best) BASIC17.53■□□□□ 0.4
Cd40lgP27548 Cbfb-201ENSMUST00000052209 2883 ntAPPRIS P3 TSL 1 (best) BASIC17.53■□□□□ 0.4
Cd40lgP27548 Tpd52-205ENSMUST00000120143 6317 ntTSL 1 (best) BASIC17.53■□□□□ 0.4
Cd40lgP27548 Plekhm2-202ENSMUST00000084203 4136 ntAPPRIS P3 TSL 5 BASIC17.53■□□□□ 0.4
Cd40lgP27548 Gm26682-201ENSMUST00000180850 1729 ntTSL 1 (best) BASIC17.52■□□□□ 0.4
Cd40lgP27548 Raph1-202ENSMUST00000090293 2409 ntAPPRIS ALT2 TSL 5 BASIC17.52■□□□□ 0.4
Cd40lgP27548 Wdsub1-202ENSMUST00000102751 1526 ntTSL 1 (best) BASIC17.52■□□□□ 0.4
Cd40lgP27548 Art5-201ENSMUST00000094128 1518 ntAPPRIS P1 TSL 2 BASIC17.52■□□□□ 0.4
Cd40lgP27548 Exoc3l2-201ENSMUST00000011407 2200 ntTSL 5 BASIC17.52■□□□□ 0.4
Cd40lgP27548 Ndel1-201ENSMUST00000018880 2382 ntAPPRIS P1 TSL 1 (best) BASIC17.52■□□□□ 0.4
Cd40lgP27548 Cnbp-208ENSMUST00000204653 2175 ntTSL 1 (best) BASIC17.52■□□□□ 0.4
Cd40lgP27548 Cnbp-201ENSMUST00000032138 2178 ntTSL 1 (best) BASIC17.52■□□□□ 0.4
Cd40lgP27548 Tsen54-201ENSMUST00000021134 1979 ntAPPRIS P2 TSL 1 (best) BASIC17.52■□□□□ 0.4
Cd40lgP27548 Jmy-201ENSMUST00000065537 8776 ntAPPRIS P1 TSL 1 (best) BASIC17.52■□□□□ 0.39
Cd40lgP27548 AC161052.2-201ENSMUST00000220969 1375 ntTSL 5 BASIC17.52■□□□□ 0.39
Cd40lgP27548 Gclm-201ENSMUST00000029769 5589 ntAPPRIS P1 TSL 1 (best) BASIC17.52■□□□□ 0.39
Cd40lgP27548 Dtnb-216ENSMUST00000173736 2175 ntAPPRIS ALT2 TSL 5 BASIC17.52■□□□□ 0.39
Cd40lgP27548 Zfp623-201ENSMUST00000037260 2463 ntAPPRIS P1 TSL 1 (best) BASIC17.52■□□□□ 0.39
Cd40lgP27548 Ankrd33b-203ENSMUST00000110410 2070 ntAPPRIS P3 TSL 1 (best) BASIC17.51■□□□□ 0.39
Cd40lgP27548 Rimbp3-201ENSMUST00000169803 5787 ntAPPRIS P1 BASIC17.51■□□□□ 0.39
Cd40lgP27548 Tmem114-201ENSMUST00000023400 1406 ntAPPRIS P1 TSL 1 (best) BASIC17.51■□□□□ 0.39
Cd40lgP27548 Rbp4-201ENSMUST00000025951 1243 ntTSL 1 (best) BASIC17.51■□□□□ 0.39
Cd40lgP27548 Spaca1-201ENSMUST00000029927 1197 ntAPPRIS P3 TSL 1 (best) BASIC17.51■□□□□ 0.39
Cd40lgP27548 Calml3-201ENSMUST00000077698 1421 ntAPPRIS P1 BASIC17.51■□□□□ 0.39
Cd40lgP27548 Krtap5-3-201ENSMUST00000084414 1074 ntAPPRIS ALT2 TSL 5 BASIC17.51■□□□□ 0.39
Cd40lgP27548 Spaca1-202ENSMUST00000084734 1149 ntAPPRIS ALT2 TSL 1 (best) BASIC17.51■□□□□ 0.39
Cd40lgP27548 Shisa7-203ENSMUST00000119433 3481 ntAPPRIS P2 TSL 1 (best) BASIC17.51■□□□□ 0.39
Cd40lgP27548 Tbc1d25-204ENSMUST00000172020 2441 ntAPPRIS ALT2 TSL 1 (best) BASIC17.51■□□□□ 0.39
Cd40lgP27548 Zbtb7a-204ENSMUST00000121840 1676 ntTSL 1 (best) BASIC17.51■□□□□ 0.39
Cd40lgP27548 Hopxos-201ENSMUST00000148568 1661 ntTSL 1 (best) BASIC17.51■□□□□ 0.39
Cd40lgP27548 Tfap2e-201ENSMUST00000048194 2085 ntAPPRIS P1 TSL 1 (best) BASIC17.51■□□□□ 0.39
Cd40lgP27548 Cacul1-201ENSMUST00000081790 5790 ntAPPRIS P3 TSL 1 (best) BASIC17.51■□□□□ 0.39
Cd40lgP27548 Triobp-202ENSMUST00000109688 2553 ntAPPRIS ALT2 TSL 1 (best) BASIC17.5■□□□□ 0.39
Cd40lgP27548 Cdkn3-203ENSMUST00000227149 1952 ntBASIC17.5■□□□□ 0.39
Retrieved 100 of 76,532 protein–RNA pairs in 24.2 ms